EY665408

Overview
NameEY665408
Unique NameEY665408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1006
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665408 vs. ExPASy Swiss-Prot
Match: MDHM_RAT (Malate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Mdh2 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 3.338e-34
Identity = 82/165 (49.70%), Postives = 108/165 (65.45%), Query Frame = 2
Query:   80 KVAVLGAAGGIGQPLAMLMNINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLFEGIAKWXXXXXXXXXXXXXXXPQFPLLVKVFKKVGPYRS*TDFWESQGVGVVQAKNFLG-VEGLE 571
            KVAVLGA+GGIGQPL++L+  +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +QL D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+                   P+  +VFKK G Y     F  +  + +V+A  F+  ++GL+
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQ-HCPEAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTT-LDIVRANTFVAELKGLD 188          
BLAST of EY665408 vs. ExPASy Swiss-Prot
Match: MDHM_MOUSE (Malate dehydrogenase, mitochondrial OS=Mus musculus GN=Mdh2 PE=1 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 3.338e-34
Identity = 82/165 (49.70%), Postives = 108/165 (65.45%), Query Frame = 2
Query:   80 KVAVLGAAGGIGQPLAMLMNINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLFEGIAKWXXXXXXXXXXXXXXXPQFPLLVKVFKKVGPYRS*TDFWESQGVGVVQAKNFLG-VEGLE 571
            KVAVLGA+GGIGQPL++L+  +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +QL D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+                   P+  +VFKK G Y     F  +  + +V+A  F+  ++GL+
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQ-HCPEAMVCIIANPVNSTIPITAEVFKKHGVYNPNKIFGVTT-LDIVRANTFVAELKGLD 188          
BLAST of EY665408 vs. ExPASy Swiss-Prot
Match: MDHM_CAEEL (Probable malate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=mdh-1 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.074e-32
Identity = 80/157 (50.96%), Postives = 99/157 (63.06%), Query Frame = 2
Query:   20 AFRSGLGRMDCRAKPWSPGFKVAVLGAAGGIGQPLAMLMNINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLFEGIAKWXXXXXXXXXXXXXXXPQFPLLVKVFKKVGPY 490
            A  SGL  +  R    +P  KVA+LGAAGGIGQPL +L+  +PLV+ L LYDVVNTPGV AD+SH+D+NA V    G ++L  A+   D+++IPAGVPRKPGMTRDDLFN NAGIV+ L   IAK                   P+  +V KK G Y
Sbjct:   12 AANSGLRAVSVRHSSQAP--KVALLGAAGGIGQPLGLLLKQDPLVAHLALYDVVNTPGVAADLSHIDSNAKVTAHTGPKELYAAVENADVIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAVIAK-ASPKALIAIITNPVNSTVPIASEVLKKAGVY 165          
BLAST of EY665408 vs. ExPASy Swiss-Prot
Match: MDHM_CHLRE (Malate dehydrogenase, mitochondrial OS=Chlamydomonas reinhardtii PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.392e-32
Identity = 87/173 (50.29%), Postives = 107/173 (61.85%), Query Frame = 2
Query:   74 GFKVAVLGAAGGIGQPLAMLMNINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLFEGIAKWXXXXXXXXXXXXXXXPQFPLLVKVFKKVGPYRS*TDFWESQGV---GVVQAKNFLGVE-GLEVKS 580
            G KVAVLGAAGGIGQPL+MLM +N  VS L LYD+  TPGV AD+SH++T A V+GF  +  L +AL G D+VIIPAGVPRKPGMTRDDLF INAGIV+ L   + +                   P+  +  KK+G Y    D  +  GV    VV+AK F   + GL+V S
Sbjct:   62 GRKVAVLGAAGGIGQPLSMLMKMNSQVSSLSLYDIAGTPGVAADVSHINTKAQVKGF-DKDGLAEALRGCDLVIIPAGVPRKPGMTRDDLFKINAGIVRDLVTAVGQ-HCPGAVLNIISNPVNSTVPIAAEQLKKMGVY----DKRKVMGVTTLDVVRAKTFYAEKNGLDVAS 228          
BLAST of EY665408 vs. ExPASy Swiss-Prot
Match: MDHP_YEAST (Malate dehydrogenase, peroxisomal OS=Saccharomyces cerevisiae GN=MDH3 PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 3.952e-27
Identity = 73/199 (36.68%), Postives = 120/199 (60.30%), Query Frame = 2
Query:   80 KVAVLGAAGGIGQPLAMLMNINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLFEGIAKWXXXXXXXXXXXXXXXPQFPLLVKVFKKVGPYRS*TDFWESQGVGVVQAKNFLGVEGLEVKSPREAKMIKIREDKERGTKIKPTK----HTGKT 664
            KVA+LGA+GG+GQPL++L+ ++P VS L LYD+    G+  D+SH++TN+   G+  +  +E+ L+   +V+IPAGVPRKPG+TRDDLF +NAGIVK+L   + K+                  P+ V+  KK+G ++   +      + +V+A+ FL V+ L +K+P      KI +++++ T  +       H+G+T
Sbjct:    3 KVAILGASGGVGQPLSLLLKLSPYVSELALYDIRAAEGIGKDLSHINTNSSCVGY-DKDSIENTLSNAQVVLIPAGVPRKPGLTRDDLFKMNAGIVKSLVTAVGKF-APNARILVISNPVNSLVPIAVETLKKMGKFKP-GNVMGVTNLDLVRAETFL-VDYLMLKNP------KIGQEQDKTTMHRKVTVIGGHSGET 191          
BLAST of EY665408 vs. ExPASy Swiss-Prot
Match: MDH_COLP3 (Malate dehydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 5.161e-27
Identity = 78/168 (46.43%), Postives = 103/168 (61.31%), Query Frame = 2
Query:   80 KVAVLGAAGGIGQPLAMLMNIN-PLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLFEGIAKWXXXXXXXXXXXXXXXPQFPLLVKVFKKVGPYRS*TDFWESQGVGVVQAKNFLG-VEGLEV 574
            KVAVLGAAGGIGQ L++L+    P  S L LYDV    PGV  D+SH+ T+  V GF G+  L  ALTG DIV+IPAG+PRKPGM R DLFN+NAGI+K L EGI                     P++ +VFKK G Y +   F  +  + V++++ F+  ++GL+V
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGSELSLYDVAPVVPGVAVDLSHIPTDVKVAGF-GRDDLNGALTGADIVLIPAGMPRKPGMDRADLFNVNAGIIKVLAEGIVA-SCPKALVGVITNPVNGTVPIVAEVFKKAGTYDAARLFGVTT-LDVIRSEAFVAELKGLDV 166          
BLAST of EY665408 vs. ExPASy Swiss-Prot
Match: MDHM_SCHPO (Malate dehydrogenase, mitochondrial OS=Schizosaccharomyces pombe GN=MDH1 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 5.161e-27
Identity = 64/104 (61.54%), Postives = 76/104 (73.08%), Query Frame = 2
Query:   68 SPGFKVAVLGAAGGIGQPLAMLMNINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ-LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTL 376
            S  FKVAVLGA GGIGQPL+ML+ +N  VS L L+D+   PGV ADI H++T + V G+    + LE AL G D+VIIPAGVPRKPGMTRDDLF  NA IV+ L
Sbjct:   26 SRAFKVAVLGAGGGIGQPLSMLLKLNDKVSELALFDIRGAPGVAADIGHINTTSNVVGYAPDDKGLEKALNGADVVIIPAGVPRKPGMTRDDLFATNASIVRDL 129          
BLAST of EY665408 vs. ExPASy Swiss-Prot
Match: MDHM_SCHMA (Malate dehydrogenase, mitochondrial (Fragment) OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.209e-26
Identity = 56/99 (56.57%), Postives = 74/99 (74.75%), Query Frame = 2
Query:   98 AAGGIGQPLAMLMNINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLFEGIAK 394
            A+GGIG+PL++L+  +PL+S L LYD+ +  GV AD+SH++T A V   LG  +L + LTG ++VIIPAG+PRKPGMTRDDLFN NA IV  L +  AK
Sbjct:    1 ASGGIGEPLSLLLKQSPLISQLALYDIAHVKGVAADLSHIETQAHVTAHLGPGELAECLTGANVVIIPAGLPRKPGMTRDDLFNTNASIVAELIDSCAK 99          

HSP 2 Score: 24.2534 bits (51), Expect = 1.209e-26
Identity = 10/20 (50.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:  406 KPIVNLISNPGNSPVPIAGK 465
            K ++ +I+NP NS VPIA +
Sbjct:  103 KAMICIITNPVNSTVPIAAE 122          
BLAST of EY665408 vs. ExPASy Swiss-Prot
Match: MDHM_YEAST (Malate dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae GN=MDH1 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 7.441e-26
Identity = 60/108 (55.56%), Postives = 78/108 (72.22%), Query Frame = 2
Query:   77 FKVAVLGAAGGIGQPLAMLMNINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ--LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLFEGIAK 394
            +KV VLGA GGIGQPL++L+ +N  V+ L LYD+    GV  D+SH+ TN+VV+GF  ++   L +AL   D+V+IPAGVPRKPGMTRDDLF INA IV+ L    A+
Sbjct:   18 YKVTVLGAGGGIGQPLSLLLKLNHKVTDLRLYDLKGAKGVATDLSHIPTNSVVKGFTPEEPDGLNNALKDTDMVLIPAGVPRKPGMTRDDLFAINASIVRDLAAATAE 125          

HSP 2 Score: 21.557 bits (44), Expect = 7.441e-26
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  421 LISNPGNSPVPIAGK 465
            +ISNP NS VPI  +
Sbjct:  134 VISNPVNSTVPIVAQ 148          
BLAST of EY665408 vs. ExPASy Swiss-Prot
Match: MDH_IDILO (Malate dehydrogenase OS=Idiomarina loihiensis GN=mdh PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 7.453e-26
Identity = 71/139 (51.08%), Postives = 84/139 (60.43%), Query Frame = 2
Query:   80 KVAVLGAAGGIGQPLAMLMNIN-PLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLFEGIAKWXXXXXXXXXXXXXXXPQFPLLVKVFKKVGPY 490
            KVAVLGAAGGIGQ L++L+    P  S L LYDV    PGV  D+SH+ T+  V GF G+  L  AL G DIV+IPAGVPRKPGM R DLFN+NAGIVK L +G+A                    P+  +V KK G Y
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGSELSLYDVAPVVPGVAVDLSHIPTDVKVTGF-GKDDLASALVGSDIVLIPAGVPRKPGMDRSDLFNMNAGIVKNLVQGVAD-NCPNACVGIITNPVNTTVPIAAEVLKKAGCY 138          
The following BLAST results are available for this feature:
BLAST of EY665408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
MDHM_RAT3.338e-3449.70Malate dehydrogenase, mitochondrial OS=Rattus norv... [more]
MDHM_MOUSE3.338e-3449.70Malate dehydrogenase, mitochondrial OS=Mus musculu... [more]
MDHM_CAEEL1.074e-3250.96Probable malate dehydrogenase, mitochondrial OS=Ca... [more]
MDHM_CHLRE2.392e-3250.29Malate dehydrogenase, mitochondrial OS=Chlamydomon... [more]
MDHP_YEAST3.952e-2736.68Malate dehydrogenase, peroxisomal OS=Saccharomyces... [more]
MDH_COLP35.161e-2746.43Malate dehydrogenase OS=Colwellia psychrerythraea ... [more]
MDHM_SCHPO5.161e-2761.54Malate dehydrogenase, mitochondrial OS=Schizosacch... [more]
MDHM_SCHMA1.209e-2656.57Malate dehydrogenase, mitochondrial (Fragment) OS=... [more]
MDHM_YEAST7.441e-2655.56Malate dehydrogenase, mitochondrial OS=Saccharomyc... [more]
MDH_IDILO7.453e-2651.08Malate dehydrogenase OS=Idiomarina loihiensis GN=m... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-F01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665408 ID=EY665408; Name=EY665408; organism=Citrus sinensis; type=EST; length=1006bp
AATGGAATGATAGATAGACGCATTTAGATCGGGTTTGGGGCGGATGGATT
GCAGGGCAAAACCCTGGTCGCCCGGATTCAAGGTGGCTGTATTGGGAGCT
GCTGGAGGGATTGGACAGCCTCTGGCTATGTTGATGAACATCAATCCCTT
GGTTTCAGTTCTTCATCTTTATGATGTTGTCAATACTCCTGGGGTTACTG
CCGATATCAGTCACATGGATACAAATGCTGTGGTACGAGGATTTTTGGGG
CAACAGCAATTGGAGGATGCCCTCACGGGCATGGACATTGTAATCATTCC
CGCTGGTGTTCCTAGGAAACCTGGAATGACTAGGGATGATCTGTTCAATA
TCAATGCCGGAATTGTTAAGACCCTTTTTGAAGGAATAGCTAAGTGGCTG
TCCAAAAGCCTATTGTGAACTTGATTAGTAATCCTGGTAACTCCCCAGTT
CCCATTGCTGGTAAAAGTTTTCAAGAAAGTTGGGCCTTATAGATCCTAAA
CCGATTTTTGGGAATCACAAGGGGTTGGAGTTGTACAAGCCAAAAACTTT
TTGGGGGTGGAAGGCTTGGAGGTTAAGTCCCCCAGGGAAGCAAAAATGAT
AAAGATAAGGGAGGACAAAGAACGAGGGACAAAAATTAAACCAACTAAAC
ACACAGGGAAAACAACAGAAGACAGAAATGAATGGCCAGTATAAGAGAAA
TAATGCTACGACTGAATTGAGAGCAAAAACAGGAACCAATAAGAGACAAG
AAGTTCCGAGAGATGACGCTGTGGGGCGCAGACGAGGGCGACCAGAAAAA
CGGAGAAAAAGAAAAAAGGAGAAAAGGGACAGCAATACAAAGAAAACTAA
CAGAAGATATGTAAACCCTTATACACATCCGCGCGTAGACAGACGACAAG
AGACGATAATCAGAGCACATAAAATACTTACGGGATAAAAAAATTAAGAT
TGAGGAATGAACACGACGGTAAACAGAAGATATCTCACGACTACCCGGAA
ATCTAT
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