CV885490

Overview
NameCV885490
Unique NameCV885490
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A7_ORYSJ (Probable histone H2A.7 OS=Oryza sativa subsp. japonica GN=Os12g0438000 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.616e-38
Identity = 86/133 (64.66%), Postives = 92/133 (69.17%), Query Frame = -3 
Query:  212 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 610
            MAGRGK +               GLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKKTRIVPRHIQLAVRNDEEL+KLLG  TIA+GGVMPNIH  LLPKK G+S +  AD+D
Sbjct:    1 MAGRGKAIGAGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSKASHADDD 133
[Close]
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A7_ORYSI (Probable histone H2A.7 OS=Oryza sativa subsp. indica GN=OsI_036922 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.616e-38
Identity = 86/133 (64.66%), Postives = 92/133 (69.17%), Query Frame = -3 
Query:  212 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 610
            MAGRGK +               GLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKKTRIVPRHIQLAVRNDEEL+KLLG  TIA+GGVMPNIH  LLPKK G+S +  AD+D
Sbjct:    1 MAGRGKAIGAGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSKASHADDD 133
[Close]
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSJ (Probable histone H2A.1 OS=Oryza sativa subsp. japonica GN=Os07g0545300 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.640e-37
Identity = 85/133 (63.91%), Postives = 91/133 (68.42%), Query Frame = -3 
Query:  212 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 610
            MAGRGK +               GLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKKTRIVPRHIQLAVRNDEEL+KLLG  TIA+GGVMPNIH  LLPKK G+S +   D+D
Sbjct:    1 MAGRGKAIGAGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSKASTVDDD 133
[Close]
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSI (Probable histone H2A.1 OS=Oryza sativa subsp. indica GN=OsI_26380 PE=3 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.640e-37
Identity = 85/133 (63.91%), Postives = 91/133 (68.42%), Query Frame = -3 
Query:  212 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 610
            MAGRGK +               GLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKKTRIVPRHIQLAVRNDEEL+KLLG  TIA+GGVMPNIH  LLPKK G+S +   D+D
Sbjct:    1 MAGRGKAIGAGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSKASTVDDD 133
[Close]
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A4_WHEAT (Histone H2A.4 OS=Triticum aestivum GN=TH254 PE=2 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 1.813e-36
Identity = 84/133 (63.16%), Postives = 89/133 (66.92%), Query Frame = -3 
Query:  212 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 610
            MAGRGK +               GLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKKTRIVPRHIQLAVRNDEEL+KLLG  TIA+GGVMPNIH  LLPKK  +S     D+D
Sbjct:    1 MAGRGKAIGAGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKASSSKVSTVDDD 133
[Close]
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.217e-34
Identity = 76/99 (76.77%), Postives = 79/99 (79.80%), Query Frame = -3 
Query:  242 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG 538
            LQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH +LLPKK+G
Sbjct:   27 LQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKSG 125
[Close]
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.895e-34
Identity = 76/99 (76.77%), Postives = 77/99 (77.78%), Query Frame = -3 
Query:  242 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG 538
            LQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLP K G
Sbjct:   31 LQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG 129
[Close]
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.450e-34
Identity = 75/99 (75.76%), Postives = 77/99 (77.78%), Query Frame = -3 
Query:  242 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG 538
            LQFPVGRIARFLK+GKYAERVGAGAP                 AGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLP K G
Sbjct:   31 LQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG 129
[Close]
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.100e-33
Identity = 75/99 (75.76%), Postives = 76/99 (76.77%), Query Frame = -3 
Query:  242 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG 538
            LQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNK  RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK G
Sbjct:   28 LQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVG 126
[Close]
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A4_VOLCA (Histone H2A-IV OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.201e-33
Identity = 81/131 (61.83%), Postives = 89/131 (67.94%), Query Frame = -3 
Query:  221 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT-GTSGSKAA 610
            MAGRGK                 GLQFPVGRIAR+LK GKYAER+GAGAP                 AGNAARDNKK RIVPRHIQLA+RNDEEL KLLGDVTIA+GGV+PNIH +LLPKK+ G  G +AA
Sbjct:    1 MAGRGK--GKTAGKKAVSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSKGGKGEEAA 129
The following BLAST results are available for this feature:
BLAST of CV885490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
H2A7_ORYSJ9.616e-3864.66Probable histone H2A.7 OS=Oryza sativa subsp. japo... [more]
H2A7_ORYSI9.616e-3864.66Probable histone H2A.7 OS=Oryza sativa subsp. indi... [more]
H2A1_ORYSJ1.640e-3763.91Probable histone H2A.1 OS=Oryza sativa subsp. japo... [more]
H2A1_ORYSI1.640e-3763.91Probable histone H2A.1 OS=Oryza sativa subsp. indi... [more]
H2A4_WHEAT1.813e-3663.16Histone H2A.4 OS=Triticum aestivum GN=TH254 PE=2 S... [more]
H2AX_PICAB2.217e-3476.77Histone H2AX OS=Picea abies PE=2 SV=1[more]
H2AXB_ARATH2.895e-3476.77Probable histone H2AXb OS=Arabidopsis thaliana GN=... [more]
H2AXA_ARATH6.450e-3475.76Probable histone H2AXa OS=Arabidopsis thaliana GN=... [more]
H2AX_CICAR1.100e-3375.76Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1[more]
H2A4_VOLCA3.201e-3361.83Histone H2A-IV OS=Volvox carteri PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_016A03_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_016_T7_A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885490 ID=CV885490; Name=CV885490; organism=Citrus sinensis; type=EST; length=669bp
TTTTTTTTTTTTTTAAAGAAAAAGCAATTCTTCTTCTATTAAGCAACTGA
GAGAAATTATACACAAACATAGCTATTTGAAATCCTAACTACAACCACAA
AAACAACAAACTAACTAAACAAACACTAAAAAGGCAAATGTCACATAGCA
CAATTAACACAAAGAGTGTTGATCATATCACTTTGACTCTTCTAGTGATG
AGAATTTAACTGTCTTCATCAGCAGCCTTGGACCCTGAAGTTCCAGTCTT
CTTGGGAAGGAGAAGGTTGTGGATGTTGGGCATCACACCACCGTTAGCAA
TGGTAACATCCCCAAGAAGCTTGCTGAGCTCCTCATCATTCCTGACAGCC
AATTGGATGTGGCGAGGGACAATTCGTGTTTTCTTGTTGTCCCTTGCAGC
ATTTCCAGCTAATTCCAAAACCTCAGCGGCGAGATATTCAAGGACGGCGG
CGAGATAAACCGGGGCTCCGGCACCGACCCGTTCAGCATATTTCCCGGCT
TTCAGGAACCTGGCAATACGACCGACGGGAAATTGAAGCCCCGCTTTGCT
GCTACGTGAGGTGGCCTTCTTCGCCGCCCCGGACCCGAGAGTCTTGCCCC
GACCCGCCATCTCAAGTGAAAAAGCTCTTAACGAAGAAAGGAAAATGGAA
AGAGCAAAAGGTTGAGCCT
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