CV885490

Overview
NameCV885490
Unique NameCV885490
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2AZ_USTMA (Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.115e-12
Identity = 43/95 (45.26%), Postives = 55/95 (57.89%), Query Frame = -3
Query:  257 LQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLL 538
            LQFPVGRI R LK+      R+GA A                  AGNA++D +  RI PRH+QLA+R DEEL  ++   TIA GGV+P+IH  L+
Sbjct:   32 LQFPVGRIHRHLKSRTQNHVRIGAKAAVYTSAILEYLTAEVLELAGNASKDMRLKRITPRHLQLAIRGDEELDSMV-RATIAGGGVLPHIHKTLI 125          
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2AZ_ASPTN (Histone H2A.Z OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.313e-12
Identity = 50/108 (46.30%), Postives = 58/108 (53.70%), Query Frame = -3
Query:  230 LQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLL----PKKTGTSGS 538
            LQFP G + RFLK     + RVGA A                  AGNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P I+  LL     KK G S S
Sbjct:   32 LQFPRGSVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAFGGVLPRINRALLLKVEQKKKGKSDS 138          
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2AZ_PHANO (Histone H2A.Z OS=Phaeosphaeria nodorum GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.063e-12
Identity = 45/97 (46.39%), Postives = 55/97 (56.70%), Query Frame = -3
Query:  251 LQFPVGRIARFLKA-GKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 538
            LQFP GRI R L+   +   R+GA A                  AGNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+I+  LL K
Sbjct:   32 LQFPCGRIKRHLRTITRQKTRIGAKASIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAFGGVLPHINRALLLK 127          
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2AV1_DICDI (Histone H2A.v1 OS=Dictyostelium discoideum GN=H2Av1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 40/101 (39.60%), Postives = 54/101 (53.47%), Query Frame = -3
Query:  242 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLL--PKKTG 538
            L FPV RI + ++ G++ +R  + AP                 +   A    KTRI P+HI L++  D EL+ LL +VTIANGGV   IH +LL  PKK G
Sbjct:  139 LTFPVSRIEKMIREGRFTKRCSSDAPVFLAAVLEYLTLEILELSITYANQKNKTRITPQHIHLSICCDAELNDLLKNVTIANGGVPKFIHPILLDTPKKKG 239          
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A_TRYCR (Histone H2A OS=Trypanosoma cruzi PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.672e-11
Identity = 38/107 (35.51%), Postives = 56/107 (52.34%), Query Frame = -3
Query:  224 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKT--RIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKA 538
            L FPVGR+   L+ G+YA R+GA                    +  AA    K   R+ PR + LAVR+D++L  LL DVT++ GGVMP+++  L  K   +  ++A
Sbjct:   25 LIFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAASQQAKKPKRLTPRTVTLAVRHDDDLGMLLKDVTLSRGGVMPSLNKALAKKHKSSKKARA 131          
The following BLAST results are available for this feature:
BLAST of CV885490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
H2AZ_USTMA3.115e-1245.26Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1[more]
H2AZ_ASPTN5.313e-1246.30Histone H2A.Z OS=Aspergillus terreus (strain NIH 2... [more]
H2AZ_PHANO9.063e-1246.39Histone H2A.Z OS=Phaeosphaeria nodorum GN=HTZ1 PE=... [more]
H2AV1_DICDI5.874e-1139.60Histone H2A.v1 OS=Dictyostelium discoideum GN=H2Av... [more]
H2A_TRYCR7.672e-1135.51Histone H2A OS=Trypanosoma cruzi PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_016A03_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_016_T7_A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885490 ID=CV885490; Name=CV885490; organism=Citrus sinensis; type=EST; length=669bp
TTTTTTTTTTTTTTAAAGAAAAAGCAATTCTTCTTCTATTAAGCAACTGA
GAGAAATTATACACAAACATAGCTATTTGAAATCCTAACTACAACCACAA
AAACAACAAACTAACTAAACAAACACTAAAAAGGCAAATGTCACATAGCA
CAATTAACACAAAGAGTGTTGATCATATCACTTTGACTCTTCTAGTGATG
AGAATTTAACTGTCTTCATCAGCAGCCTTGGACCCTGAAGTTCCAGTCTT
CTTGGGAAGGAGAAGGTTGTGGATGTTGGGCATCACACCACCGTTAGCAA
TGGTAACATCCCCAAGAAGCTTGCTGAGCTCCTCATCATTCCTGACAGCC
AATTGGATGTGGCGAGGGACAATTCGTGTTTTCTTGTTGTCCCTTGCAGC
ATTTCCAGCTAATTCCAAAACCTCAGCGGCGAGATATTCAAGGACGGCGG
CGAGATAAACCGGGGCTCCGGCACCGACCCGTTCAGCATATTTCCCGGCT
TTCAGGAACCTGGCAATACGACCGACGGGAAATTGAAGCCCCGCTTTGCT
GCTACGTGAGGTGGCCTTCTTCGCCGCCCCGGACCCGAGAGTCTTGCCCC
GACCCGCCATCTCAAGTGAAAAAGCTCTTAACGAAGAAAGGAAAATGGAA
AGAGCAAAAGGTTGAGCCT
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