CV885490

Overview
NameCV885490
Unique NameCV885490
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A1_CANAL (Histone H2A.1 OS=Candida albicans GN=HTA1 PE=3 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 5.110e-31
Identity = 66/108 (61.11%), Postives = 79/108 (73.15%), Query Frame = -3
Query:  215 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 538
            L FPVGR+ R L+ G YA+R+G+GAP                 AGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLGDVTIA GGV+PNIH  LLPKK+G  G KA+ E
Sbjct:   24 LTFPVGRVHRLLRKGNYAQRIGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNIHQNLLPKKSGKGGVKASQE 131          
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A_MAGGR (Histone H2A OS=Magnaporthe grisea GN=HTA1 PE=2 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 8.717e-31
Identity = 69/110 (62.73%), Postives = 80/110 (72.73%), Query Frame = -3
Query:  212 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG-TSGSKAADED 538
            L FPVGR+ R L+ G YA+RVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKKTG T+G K A ++
Sbjct:   26 LAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTGKTAGGKNASQE 135          
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2AX_DANRE (Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 8.717e-31
Identity = 74/129 (57.36%), Postives = 85/129 (65.89%), Query Frame = -3
Query:  224 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKA 610
            M+GRGKT                GLQFPVGR+ R L+ G YAERVGAGAP                 AGNAARDNKKTRI+PRH+QLAVRNDEEL+KLLG VTIA GGV+PNI  +LLPKKTG + + +
Sbjct:    1 MSGRGKT-GGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTGQAAASS 128          
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A_CHAGB (Histone H2A OS=Chaetomium globosum GN=HTA1 PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.138e-30
Identity = 67/108 (62.04%), Postives = 77/108 (71.30%), Query Frame = -3
Query:  215 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 538
            L FPVGR+ R L+ G YA+RVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKKTG +G   + E
Sbjct:   26 LAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTGKTGKTLSQE 133          
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A_GIBZE (Histone H2A OS=Gibberella zeae GN=HTA1 PE=3 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 1.487e-30
Identity = 67/108 (62.04%), Postives = 78/108 (72.22%), Query Frame = -3
Query:  215 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 538
            L FPVGR+ R L+ G YA+RVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKKTG +G  ++ E
Sbjct:   26 LAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTGKTGKTSSME 133          
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A_BOTFB (Histone H2A OS=Botryotinia fuckeliana (strain B05.10) GN=hta1 PE=3 SV=4)

HSP 1 Score: 131.724 bits (330), Expect = 3.313e-30
Identity = 68/110 (61.82%), Postives = 79/110 (71.82%), Query Frame = -3
Query:  212 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG-TSGSKAADED 538
            L FPVGR+ R L+ G YA+RVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKKT  T+G K A ++
Sbjct:   26 LAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTAKTAGGKPASQE 135          
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2AX_HUMAN (Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.313e-30
Identity = 76/130 (58.46%), Postives = 85/130 (65.38%), Query Frame = -3
Query:  224 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT-GTSGSKA 610
            M+GRGKT                GLQFPVGR+ R L+ G YAERVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT  T G KA
Sbjct:    1 MSGRGKT-GGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTSATVGPKA 129          
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A2_PICGU (Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.313e-30
Identity = 68/108 (62.96%), Postives = 79/108 (73.15%), Query Frame = -3
Query:  215 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 538
            L FPVGRI R L+ G YA+RVG+GAP                 AGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLGDVTIA GGV+PNIH  LLPKK+G  G KA+ E
Sbjct:   23 LTFPVGRIHRLLRKGNYAQRVGSGAPVYLTSVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNIHQNLLPKKSG-KGDKASQE 129          
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A2_PSAMI (Late histone H2A.2.1 OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.326e-30
Identity = 67/101 (66.34%), Postives = 74/101 (73.27%), Query Frame = -3
Query:  236 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTS 538
            LQFPVGR+ RFLK G Y  RVGAGAP                 AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGV+PNI  +LLPKKTG S
Sbjct:   23 LQFPVGRVHRFLKKGNYGNRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQTVLLPKKTGKS 123          
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A_NEOFI (Histone H2A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=hta1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.650e-30
Identity = 67/108 (62.04%), Postives = 76/108 (70.37%), Query Frame = -3
Query:  215 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 538
            L FPVGR+ R L+ G YA+RVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKKT  SG   + E
Sbjct:   25 LAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKGPSQE 132          
The following BLAST results are available for this feature:
BLAST of CV885490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
H2A1_CANAL5.110e-3161.11Histone H2A.1 OS=Candida albicans GN=HTA1 PE=3 SV=... [more]
H2A_MAGGR8.717e-3162.73Histone H2A OS=Magnaporthe grisea GN=HTA1 PE=2 SV=... [more]
H2AX_DANRE8.717e-3157.36Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3[more]
H2A_CHAGB1.138e-3062.04Histone H2A OS=Chaetomium globosum GN=HTA1 PE=3 SV... [more]
H2A_GIBZE1.487e-3062.04Histone H2A OS=Gibberella zeae GN=HTA1 PE=3 SV=3[more]
H2A_BOTFB3.313e-3061.82Histone H2A OS=Botryotinia fuckeliana (strain B05.... [more]
H2AX_HUMAN3.313e-3058.46Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2[more]
H2A2_PICGU3.313e-3062.96Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=... [more]
H2A2_PSAMI4.326e-3066.34Late histone H2A.2.1 OS=Psammechinus miliaris PE=2... [more]
H2A_NEOFI5.650e-3062.04Histone H2A OS=Neosartorya fischeri (strain ATCC 1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_016A03_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_016_T7_A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885490 ID=CV885490; Name=CV885490; organism=Citrus sinensis; type=EST; length=669bp
TTTTTTTTTTTTTTAAAGAAAAAGCAATTCTTCTTCTATTAAGCAACTGA
GAGAAATTATACACAAACATAGCTATTTGAAATCCTAACTACAACCACAA
AAACAACAAACTAACTAAACAAACACTAAAAAGGCAAATGTCACATAGCA
CAATTAACACAAAGAGTGTTGATCATATCACTTTGACTCTTCTAGTGATG
AGAATTTAACTGTCTTCATCAGCAGCCTTGGACCCTGAAGTTCCAGTCTT
CTTGGGAAGGAGAAGGTTGTGGATGTTGGGCATCACACCACCGTTAGCAA
TGGTAACATCCCCAAGAAGCTTGCTGAGCTCCTCATCATTCCTGACAGCC
AATTGGATGTGGCGAGGGACAATTCGTGTTTTCTTGTTGTCCCTTGCAGC
ATTTCCAGCTAATTCCAAAACCTCAGCGGCGAGATATTCAAGGACGGCGG
CGAGATAAACCGGGGCTCCGGCACCGACCCGTTCAGCATATTTCCCGGCT
TTCAGGAACCTGGCAATACGACCGACGGGAAATTGAAGCCCCGCTTTGCT
GCTACGTGAGGTGGCCTTCTTCGCCGCCCCGGACCCGAGAGTCTTGCCCC
GACCCGCCATCTCAAGTGAAAAAGCTCTTAACGAAGAAAGGAAAATGGAA
AGAGCAAAAGGTTGAGCCT
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