CV885490

Overview
NameCV885490
Unique NameCV885490
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A_ASPOR (Histone H2A OS=Aspergillus oryzae GN=hta1 PE=3 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 5.650e-30
Identity = 67/108 (62.04%), Postives = 76/108 (70.37%), Query Frame = -3 
Query:  215 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 538
            L FPVGR+ R L+ G YA+RVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKKT  SG   + E
Sbjct:   25 LAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKGPSQE 132
[Close]
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A_ASPFU (Histone H2A OS=Aspergillus fumigatus GN=hta1 PE=3 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 5.650e-30
Identity = 67/108 (62.04%), Postives = 76/108 (70.37%), Query Frame = -3 
Query:  215 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 538
            L FPVGR+ R L+ G YA+RVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKKT  SG   + E
Sbjct:   25 LAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKGPSQE 132
[Close]
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A_ASPCL (Histone H2A OS=Aspergillus clavatus GN=hta1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.650e-30
Identity = 67/108 (62.04%), Postives = 76/108 (70.37%), Query Frame = -3 
Query:  215 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 538
            L FPVGR+ R L+ G YA+RVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKKT  SG   + E
Sbjct:   25 LAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKGPSQE 132
[Close]
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A4_CHICK (Histone H2A-IV OS=Gallus gallus PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 5.650e-30
Identity = 67/105 (63.81%), Postives = 77/105 (73.33%), Query Frame = -3 
Query:  224 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKA 538
            LQFPVGR+ R L+ G YAERVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT +  +KA
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSHKAKA 128
[Close]
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A_ONCMY (Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 7.380e-30
Identity = 73/122 (59.84%), Postives = 81/122 (66.39%), Query Frame = -3 
Query:  245 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 610
            M+GRGKT                GLQFPVGR+ R L+ G YAERVGAGAP                 AGNAARDNKKTRI+PRH+QLAVRNDEEL+KLLG VTIA GGV+PNI  +LLPKKT
Sbjct:    1 MSGRGKT-GGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A1_XENLA (Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 7.380e-30
Identity = 67/103 (65.05%), Postives = 77/103 (74.76%), Query Frame = -3 
Query:  230 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGS 538
            LQFPVGR+ R L+ G YAERVGAGAP                 AGNAARDNKKTRI+PRH+QLAVRNDEEL+KLLG VTIA GGV+PNI ++LLPKKT ++ S
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQSVLLPKKTESAKS 126
[Close]
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A_PLAFA (Histone H2A OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.638e-30
Identity = 66/98 (67.35%), Postives = 74/98 (75.51%), Query Frame = -3 
Query:  245 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 538
            LQFPVGRI R+LK GKYA+RVGAGAP                 AGNAARDNKK+RI PRHIQLAVRNDEEL+K L  VT A+GGV+PNIHN+LLPKK+
Sbjct:   24 LQFPVGRIGRYLKKGKYAKRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRITPRHIQLAVRNDEELNKFLAGVTFASGGVLPNIHNVLLPKKS 121
[Close]
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A_PARLI (Histone H2A OS=Paracentrotus lividus PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 9.638e-30
Identity = 72/125 (57.60%), Postives = 83/125 (66.40%), Query Frame = -3 
Query:  236 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTS 610
            M+GRGK+                GLQFPVGR+ RFL+ G YA+RVG GAP                 AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGV+PNI  +LLPKKTG S
Sbjct:    1 MSGRGKS--GKARTKAKSRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTGKS 123
[Close]
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A_ASPNG (Histone H2A OS=Aspergillus niger GN=httA PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.638e-30
Identity = 66/109 (60.55%), Postives = 76/109 (69.72%), Query Frame = -3 
Query:  212 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 538
            L FPVGR+ R L+ G YA+RVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKKT  SG     ++
Sbjct:   25 LAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKGPGSQE 133
[Close]
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A_ASPNC (Histone H2A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=httA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.638e-30
Identity = 66/109 (60.55%), Postives = 76/109 (69.72%), Query Frame = -3 
Query:  212 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 538
            L FPVGR+ R L+ G YA+RVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKKT  SG     ++
Sbjct:   25 LAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKGPGSQE 133
The following BLAST results are available for this feature:
BLAST of CV885490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
H2A_ASPOR5.650e-3062.04Histone H2A OS=Aspergillus oryzae GN=hta1 PE=3 SV=... [more]
H2A_ASPFU5.650e-3062.04Histone H2A OS=Aspergillus fumigatus GN=hta1 PE=3 ... [more]
H2A_ASPCL5.650e-3062.04Histone H2A OS=Aspergillus clavatus GN=hta1 PE=3 S... [more]
H2A4_CHICK5.650e-3063.81Histone H2A-IV OS=Gallus gallus PE=1 SV=2[more]
H2A_ONCMY7.380e-3059.84Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2[more]
H2A1_XENLA7.380e-3065.05Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2[more]
H2A_PLAFA9.638e-3067.35Histone H2A OS=Plasmodium falciparum PE=2 SV=1[more]
H2A_PARLI9.638e-3057.60Histone H2A OS=Paracentrotus lividus PE=3 SV=2[more]
H2A_ASPNG9.638e-3060.55Histone H2A OS=Aspergillus niger GN=httA PE=2 SV=1[more]
H2A_ASPNC9.638e-3060.55Histone H2A OS=Aspergillus niger (strain CBS 513.8... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_016A03_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_016_T7_A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885490 ID=CV885490; Name=CV885490; organism=Citrus sinensis; type=EST; length=669bp
TTTTTTTTTTTTTTAAAGAAAAAGCAATTCTTCTTCTATTAAGCAACTGA
GAGAAATTATACACAAACATAGCTATTTGAAATCCTAACTACAACCACAA
AAACAACAAACTAACTAAACAAACACTAAAAAGGCAAATGTCACATAGCA
CAATTAACACAAAGAGTGTTGATCATATCACTTTGACTCTTCTAGTGATG
AGAATTTAACTGTCTTCATCAGCAGCCTTGGACCCTGAAGTTCCAGTCTT
CTTGGGAAGGAGAAGGTTGTGGATGTTGGGCATCACACCACCGTTAGCAA
TGGTAACATCCCCAAGAAGCTTGCTGAGCTCCTCATCATTCCTGACAGCC
AATTGGATGTGGCGAGGGACAATTCGTGTTTTCTTGTTGTCCCTTGCAGC
ATTTCCAGCTAATTCCAAAACCTCAGCGGCGAGATATTCAAGGACGGCGG
CGAGATAAACCGGGGCTCCGGCACCGACCCGTTCAGCATATTTCCCGGCT
TTCAGGAACCTGGCAATACGACCGACGGGAAATTGAAGCCCCGCTTTGCT
GCTACGTGAGGTGGCCTTCTTCGCCGCCCCGGACCCGAGAGTCTTGCCCC
GACCCGCCATCTCAAGTGAAAAAGCTCTTAACGAAGAAAGGAAAATGGAA
AGAGCAAAAGGTTGAGCCT
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