CV885489

Overview
NameCV885489
Unique NameCV885489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A1B_HUMAN (Histone H2A type 1-B/E OS=Homo sapiens GN=HIST1H2AB PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.085e-28
Identity = 63/98 (64.29%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:  133 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 426
            LQFPVGR+ R L+ G Y+ERVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT
Sbjct:   24 LQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A_TIGCA (Histone H2A OS=Tigriopus californicus GN=His2A PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.417e-28
Identity = 64/98 (65.31%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:  133 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 426
            LQFPVGRI R L+ G YAERVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLL  VTIA GGV+PNI  +LLPKKT
Sbjct:   23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A_SIPNU (Histone H2A OS=Sipunculus nudus PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.417e-28
Identity = 64/101 (63.37%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:  133 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTS 435
            LQFPVGRI R L+ G YAER+GAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLL  VTIA GGV+PNI  +LLPKKT  S
Sbjct:   23 LQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQKS 123
[Close]
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A_RHYAM (Histone H2A OS=Rhynchosciara americana GN=His2A PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.417e-28
Identity = 64/98 (65.31%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:  133 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 426
            LQFPVGRI R L+ G YAERVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLL  VTIA GGV+PNI  +LLPKKT
Sbjct:   23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A_PLADU (Histone H2A OS=Platynereis dumerilii PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.417e-28
Identity = 64/98 (65.31%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:  133 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 426
            LQFPVGRI R L+ G YAERVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLL  VTIA GGV+PNI  +LLPKKT
Sbjct:   23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A_DROYA (Histone H2A OS=Drosophila yakuba GN=His2A PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.417e-28
Identity = 64/98 (65.31%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:  133 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 426
            LQFPVGRI R L+ G YAERVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLL  VTIA GGV+PNI  +LLPKKT
Sbjct:   23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A_DROSI (Histone H2A OS=Drosophila simulans GN=His2A PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.417e-28
Identity = 64/98 (65.31%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:  133 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 426
            LQFPVGRI R L+ G YAERVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLL  VTIA GGV+PNI  +LLPKKT
Sbjct:   23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A_DROME (Histone H2A OS=Drosophila melanogaster GN=His2A PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.417e-28
Identity = 64/98 (65.31%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:  133 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 426
            LQFPVGRI R L+ G YAERVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLL  VTIA GGV+PNI  +LLPKKT
Sbjct:   23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A_DROHY (Histone H2A OS=Drosophila hydei GN=His2A PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.417e-28
Identity = 64/98 (65.31%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:  133 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 426
            LQFPVGRI R L+ G YAERVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLL  VTIA GGV+PNI  +LLPKKT
Sbjct:   23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A_DROER (Histone H2A OS=Drosophila erecta GN=His2A PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.417e-28
Identity = 64/98 (65.31%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:  133 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 426
            LQFPVGRI R L+ G YAERVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLL  VTIA GGV+PNI  +LLPKKT
Sbjct:   23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
The following BLAST results are available for this feature:
BLAST of CV885489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
H2A1B_HUMAN1.085e-2864.29Histone H2A type 1-B/E OS=Homo sapiens GN=HIST1H2A... [more]
H2A_TIGCA1.417e-2865.31Histone H2A OS=Tigriopus californicus GN=His2A PE=... [more]
H2A_SIPNU1.417e-2863.37Histone H2A OS=Sipunculus nudus PE=1 SV=2[more]
H2A_RHYAM1.417e-2865.31Histone H2A OS=Rhynchosciara americana GN=His2A PE... [more]
H2A_PLADU1.417e-2865.31Histone H2A OS=Platynereis dumerilii PE=3 SV=2[more]
H2A_DROYA1.417e-2865.31Histone H2A OS=Drosophila yakuba GN=His2A PE=2 SV=... [more]
H2A_DROSI1.417e-2865.31Histone H2A OS=Drosophila simulans GN=His2A PE=3 S... [more]
H2A_DROME1.417e-2865.31Histone H2A OS=Drosophila melanogaster GN=His2A PE... [more]
H2A_DROHY1.417e-2865.31Histone H2A OS=Drosophila hydei GN=His2A PE=3 SV=2[more]
H2A_DROER1.417e-2865.31Histone H2A OS=Drosophila erecta GN=His2A PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_016A03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_016_T3_A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885489 ID=CV885489; Name=CV885489; organism=Citrus sinensis; type=EST; length=674bp
GACGTTCAACCTTTTGCTCTTTCCATTTTCCTTTCTTCGTTACGAGCTTT
TTCACTTGAGATGGCGGGTCGGGGCAAGACTCTCGGGTCCGGGGCGGCGA
AGAAGGCCACCTCACGCTAAAGCAAAGCGGGGCTTCAATTTCCCGTCGGT
CGTATTGCCAGGTTCCTGAAAGCCGGGAAATATGCTGAACGGGTCGGTGC
CGGAGCCCCGGTTTATCTCGCCGCCGTCCTTGAATATCTCGCCGCTGAGG
TTTTGGAATTAGCTGGAAATGCTGCAAGGGACAACAAGAAAACACGAATT
GTCCCTCGCCACATCCAATTGGCTGTCAGGAATGATGAGGAGCTCAGCAA
GCTTCTTGGGGATGTTACCATTGCTAACGGTGGTGTGATGCCCAACATCC
ACAACCTTCTCCTTCCCAAGAAGACTGGAACTTCAGGGTCCAAGGCTGCT
GATGAAGACAGTTAAATTCTCATCACTAGAAGAGTCAAAGTGATATGATC
AACACTCTTTGTGTTAATTGTGCTATGTGACATTTGCCTTTTTAGTGTTT
GTTTAGTTAGTTTGTTGTTTTTGTGGTTGTAGTTAGGATTTCAAATAGCT
ATGTTTGTGTATAATTTCTCTCAGTTGCTTAATAGAAGAAGAATTGCTTT
TTACTTTTAAAAAAAAAAAAAAAA
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