CV885489

Overview
NameCV885489
Unique NameCV885489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A1_CANAL (Histone H2A.1 OS=Candida albicans GN=HTA1 PE=3 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 5.204e-31
Identity = 65/108 (60.19%), Postives = 78/108 (72.22%), Query Frame = 1
Query:  133 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 456
            L FPVGR+ R L+ G YA+R+G+GAP                  GNAARDNKK+RI+PRH+QLA+RNDEEL+KLLGDVTIA GGV+PNIH  LLPKK+G  G KA+ E
Sbjct:   24 LTFPVGRVHRLLRKGNYAQRIGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNIHQNLLPKKSGKGGVKASQE 131          
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A_MAGGR (Histone H2A OS=Magnaporthe grisea GN=HTA1 PE=2 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 8.877e-31
Identity = 68/110 (61.82%), Postives = 79/110 (71.82%), Query Frame = 1
Query:  133 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG-TSGSKAADED 459
            L FPVGR+ R L+ G YA+RVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKKTG T+G K A ++
Sbjct:   26 LAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTGKTAGGKNASQE 135          
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2AX_DANRE (Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 8.877e-31
Identity = 72/129 (55.81%), Postives = 83/129 (64.34%), Query Frame = 1
Query:   61 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKA 447
            M+GRGKT                 LQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNKKTRI+PRH+QLAVRNDEEL+KLLG VTIA GGV+PNI  +LLPKKTG + + +
Sbjct:    1 MSGRGKT-GGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTGQAAASS 128          
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A_CHAGB (Histone H2A OS=Chaetomium globosum GN=HTA1 PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.159e-30
Identity = 66/108 (61.11%), Postives = 76/108 (70.37%), Query Frame = 1
Query:  133 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 456
            L FPVGR+ R L+ G YA+RVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKKTG +G   + E
Sbjct:   26 LAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTGKTGKTLSQE 133          
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A_GIBZE (Histone H2A OS=Gibberella zeae GN=HTA1 PE=3 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 1.514e-30
Identity = 66/108 (61.11%), Postives = 77/108 (71.30%), Query Frame = 1
Query:  133 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 456
            L FPVGR+ R L+ G YA+RVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKKTG +G  ++ E
Sbjct:   26 LAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTGKTGKTSSME 133          
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A_BOTFB (Histone H2A OS=Botryotinia fuckeliana (strain B05.10) GN=hta1 PE=3 SV=4)

HSP 1 Score: 131.724 bits (330), Expect = 3.373e-30
Identity = 67/110 (60.91%), Postives = 78/110 (70.91%), Query Frame = 1
Query:  133 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG-TSGSKAADED 459
            L FPVGR+ R L+ G YA+RVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKKT  T+G K A ++
Sbjct:   26 LAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTAKTAGGKPASQE 135          
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2AX_HUMAN (Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.373e-30
Identity = 74/130 (56.92%), Postives = 83/130 (63.85%), Query Frame = 1
Query:   61 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT-GTSGSKA 447
            M+GRGKT                 LQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT  T G KA
Sbjct:    1 MSGRGKT-GGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTSATVGPKA 129          
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A2_PICGU (Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.373e-30
Identity = 67/108 (62.04%), Postives = 78/108 (72.22%), Query Frame = 1
Query:  133 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 456
            L FPVGRI R L+ G YA+RVG+GAP                  GNAARDNKK+RI+PRH+QLA+RNDEEL+KLLGDVTIA GGV+PNIH  LLPKK+G  G KA+ E
Sbjct:   23 LTFPVGRIHRLLRKGNYAQRVGSGAPVYLTSVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNIHQNLLPKKSG-KGDKASQE 129          
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A2_PSAMI (Late histone H2A.2.1 OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.406e-30
Identity = 66/101 (65.35%), Postives = 73/101 (72.28%), Query Frame = 1
Query:  133 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTS 435
            LQFPVGR+ RFLK G Y  RVGAGAP                  GNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGV+PNI  +LLPKKTG S
Sbjct:   23 LQFPVGRVHRFLKKGNYGNRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQTVLLPKKTGKS 123          
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A_NEOFI (Histone H2A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=hta1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.754e-30
Identity = 66/108 (61.11%), Postives = 75/108 (69.44%), Query Frame = 1
Query:  133 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 456
            L FPVGR+ R L+ G YA+RVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKKT  SG   + E
Sbjct:   25 LAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKGPSQE 132          
The following BLAST results are available for this feature:
BLAST of CV885489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
H2A1_CANAL5.204e-3160.19Histone H2A.1 OS=Candida albicans GN=HTA1 PE=3 SV=... [more]
H2A_MAGGR8.877e-3161.82Histone H2A OS=Magnaporthe grisea GN=HTA1 PE=2 SV=... [more]
H2AX_DANRE8.877e-3155.81Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3[more]
H2A_CHAGB1.159e-3061.11Histone H2A OS=Chaetomium globosum GN=HTA1 PE=3 SV... [more]
H2A_GIBZE1.514e-3061.11Histone H2A OS=Gibberella zeae GN=HTA1 PE=3 SV=3[more]
H2A_BOTFB3.373e-3060.91Histone H2A OS=Botryotinia fuckeliana (strain B05.... [more]
H2AX_HUMAN3.373e-3056.92Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2[more]
H2A2_PICGU3.373e-3062.04Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=... [more]
H2A2_PSAMI4.406e-3065.35Late histone H2A.2.1 OS=Psammechinus miliaris PE=2... [more]
H2A_NEOFI5.754e-3061.11Histone H2A OS=Neosartorya fischeri (strain ATCC 1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_016A03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_016_T3_A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885489 ID=CV885489; Name=CV885489; organism=Citrus sinensis; type=EST; length=674bp
GACGTTCAACCTTTTGCTCTTTCCATTTTCCTTTCTTCGTTACGAGCTTT
TTCACTTGAGATGGCGGGTCGGGGCAAGACTCTCGGGTCCGGGGCGGCGA
AGAAGGCCACCTCACGCTAAAGCAAAGCGGGGCTTCAATTTCCCGTCGGT
CGTATTGCCAGGTTCCTGAAAGCCGGGAAATATGCTGAACGGGTCGGTGC
CGGAGCCCCGGTTTATCTCGCCGCCGTCCTTGAATATCTCGCCGCTGAGG
TTTTGGAATTAGCTGGAAATGCTGCAAGGGACAACAAGAAAACACGAATT
GTCCCTCGCCACATCCAATTGGCTGTCAGGAATGATGAGGAGCTCAGCAA
GCTTCTTGGGGATGTTACCATTGCTAACGGTGGTGTGATGCCCAACATCC
ACAACCTTCTCCTTCCCAAGAAGACTGGAACTTCAGGGTCCAAGGCTGCT
GATGAAGACAGTTAAATTCTCATCACTAGAAGAGTCAAAGTGATATGATC
AACACTCTTTGTGTTAATTGTGCTATGTGACATTTGCCTTTTTAGTGTTT
GTTTAGTTAGTTTGTTGTTTTTGTGGTTGTAGTTAGGATTTCAAATAGCT
ATGTTTGTGTATAATTTCTCTCAGTTGCTTAATAGAAGAAGAATTGCTTT
TTACTTTTAAAAAAAAAAAAAAAA
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