CV885489

Overview
NameCV885489
Unique NameCV885489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A_STRPU (Histone H2A, embryonic OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 4.871e-29
Identity = 69/125 (55.20%), Postives = 80/125 (64.00%), Query Frame = 1 
Query:   61 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTS 435
            M+GRGK+                 LQFPVGR+ RFL+ G YA+RVG GAP                  GNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGV+PNI  +LLPKKT  S
Sbjct:    1 MSGRGKS--GKARTKAKTRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAKS 123
[Close]
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2AX_XENLA (Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 4.871e-29
Identity = 71/136 (52.21%), Postives = 85/136 (62.50%), Query Frame = 1 
Query:   61 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT----GTSGSKAADE 456
            M+GRGK +                LQFPVGR+ R L+ G YA RVGAGAP                  GNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGV+PNI  +LLPKK+     TSG K++ +
Sbjct:    1 MSGRGKAVSKTRAKAKTRSSRAG-LQFPVGRVHRLLRKGNYAHRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKSSGGVSTSGKKSSQQ 135
[Close]
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2AE_PSAMI (Histone H2A, embryonic OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 4.871e-29
Identity = 69/125 (55.20%), Postives = 80/125 (64.00%), Query Frame = 1 
Query:   61 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTS 435
            M+GRGK+                 LQFPVGR+ RFL+ G YA+RVG GAP                  GNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGV+PNI  +LLPKKT  S
Sbjct:    1 MSGRGKS--GKARTKAKTRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAKS 123
[Close]
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A3_LYTPI (Histone H2A, sperm (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.871e-29
Identity = 64/101 (63.37%), Postives = 73/101 (72.28%), Query Frame = 1 
Query:  133 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTS 435
            LQFPVGR+ RFL+ G YA+RVGAGAP                  GNAA DNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT  S
Sbjct:   10 LQFPVGRVHRFLRKGNYAQRVGAGAPVYLAAVFEYLAAEILELAGNAAPDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAKS 110
[Close]
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A1_PICST (Histone H2A.1 OS=Pichia stipitis GN=HTA2 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.871e-29
Identity = 65/108 (60.19%), Postives = 78/108 (72.22%), Query Frame = 1 
Query:  133 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 456
            L FPVGR+ R L+ G YA+RVG+GAP                  GNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKK+G S +KA+ E
Sbjct:   24 LTFPVGRVHRLLRKGNYAQRVGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKSGKS-AKASQE 130
[Close]
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A1K_MOUSE (Histone H2A type 1-K OS=Mus musculus GN=Hist1h2ak PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 4.871e-29
Identity = 64/100 (64.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:  133 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGT 432
            LQFPVGR+ R L+ G Y+ERVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT T
Sbjct:   24 LQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTET 123
[Close]
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A1E_RAT (Histone H2A type 1-E OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 4.871e-29
Identity = 64/98 (65.31%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:  133 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 426
            LQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A1C_RAT (Histone H2A type 1-C OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 4.871e-29
Identity = 64/98 (65.31%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:  133 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 426
            LQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A1C_HUMAN (Histone H2A type 1-C OS=Homo sapiens GN=HIST1H2AC PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 4.871e-29
Identity = 64/98 (65.31%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:  133 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 426
            LQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2AL_STRPU (Late histone H2A.L3 OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 6.362e-29
Identity = 64/98 (65.31%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:  133 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 426
            LQFPVGR+ RFL+ G YA+RVGAGAP                  GNAARDNKKTRI+PRH+QLAVRNDEEL+KLL  VTIA GGV+PNI  +LLPKKT
Sbjct:   24 LQFPVGRVHRFLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 121
The following BLAST results are available for this feature:
BLAST of CV885489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
H2A_STRPU4.871e-2955.20Histone H2A, embryonic OS=Strongylocentrotus purpu... [more]
H2AX_XENLA4.871e-2952.21Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3[more]
H2AE_PSAMI4.871e-2955.20Histone H2A, embryonic OS=Psammechinus miliaris PE... [more]
H2A3_LYTPI4.871e-2963.37Histone H2A, sperm (Fragment) OS=Lytechinus pictus... [more]
H2A1_PICST4.871e-2960.19Histone H2A.1 OS=Pichia stipitis GN=HTA2 PE=3 SV=1[more]
H2A1K_MOUSE4.871e-2964.00Histone H2A type 1-K OS=Mus musculus GN=Hist1h2ak ... [more]
H2A1E_RAT4.871e-2965.31Histone H2A type 1-E OS=Rattus norvegicus PE=1 SV=... [more]
H2A1C_RAT4.871e-2965.31Histone H2A type 1-C OS=Rattus norvegicus PE=1 SV=... [more]
H2A1C_HUMAN4.871e-2965.31Histone H2A type 1-C OS=Homo sapiens GN=HIST1H2AC ... [more]
H2AL_STRPU6.362e-2965.31Late histone H2A.L3 OS=Strongylocentrotus purpurat... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_016A03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_016_T3_A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885489 ID=CV885489; Name=CV885489; organism=Citrus sinensis; type=EST; length=674bp
GACGTTCAACCTTTTGCTCTTTCCATTTTCCTTTCTTCGTTACGAGCTTT
TTCACTTGAGATGGCGGGTCGGGGCAAGACTCTCGGGTCCGGGGCGGCGA
AGAAGGCCACCTCACGCTAAAGCAAAGCGGGGCTTCAATTTCCCGTCGGT
CGTATTGCCAGGTTCCTGAAAGCCGGGAAATATGCTGAACGGGTCGGTGC
CGGAGCCCCGGTTTATCTCGCCGCCGTCCTTGAATATCTCGCCGCTGAGG
TTTTGGAATTAGCTGGAAATGCTGCAAGGGACAACAAGAAAACACGAATT
GTCCCTCGCCACATCCAATTGGCTGTCAGGAATGATGAGGAGCTCAGCAA
GCTTCTTGGGGATGTTACCATTGCTAACGGTGGTGTGATGCCCAACATCC
ACAACCTTCTCCTTCCCAAGAAGACTGGAACTTCAGGGTCCAAGGCTGCT
GATGAAGACAGTTAAATTCTCATCACTAGAAGAGTCAAAGTGATATGATC
AACACTCTTTGTGTTAATTGTGCTATGTGACATTTGCCTTTTTAGTGTTT
GTTTAGTTAGTTTGTTGTTTTTGTGGTTGTAGTTAGGATTTCAAATAGCT
ATGTTTGTGTATAATTTCTCTCAGTTGCTTAATAGAAGAAGAATTGCTTT
TTACTTTTAAAAAAAAAAAAAAAA
back to top