CX043270

Overview
NameCX043270
Unique NameCX043270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043270_ssr270 microsatellite CX043270_ssr270:270..287. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1840 contig Csv1_Contig1840:1097..1879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_RHOPA (Adenosylhomocysteinase OS=Rhodopseudomonas palustris GN=ahcY PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.069e-44
Identity = 95/161 (59.01%), Postives = 114/161 (70.81%), Query Frame = -3
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGNKDII ++HM+ MK+ AIVCNIGHFDNEI V  L+    +K   IKPQ D   FP+    +I+L+EGRL+NLG A GHPSFVMS SFTNQ +AQ+EL++ +  GKYEKKVYVLPK LDEKV           LT L K+QADYI V  +GP+K  HYRY
Sbjct:  315 TGNKDIITIEHMRAMKDRAIVCNIGHFDNEIQVATLKN---MKWDNIKPQVDEITFPD-GKRMILLSEGRLVNLGNAMGHPSFVMSASFTNQTLAQIELFQNQ--GKYEKKVYVLPKTLDEKVARLHLAKIGVKLTELRKDQADYIGVKVEGPFKADHYRY 469          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_STRAA (Adenosylhomocysteinase OS=Streptomyces argillaceus GN=ahcY PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.547e-43
Identity = 95/162 (58.64%), Postives = 108/162 (66.67%), Query Frame = -3
Query:  296 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 781
            TTGNKDIIM   M +MK+ AIV NIGHFDNEID+ GL   PG+ +  IKPQ   W FP+    IIVL+EGRL+NLG ATGHPSFVMS SF +Q +AQ+EL+ +   G Y   VY LPKHLDEKV           LT L  EQA YI V  DGPYK  HYRY
Sbjct:  324 TTGNKDIIMAADMARMKHQAIVGNIGHFDNEIDMAGLAKVPGIVKDEIKPQVHTWTFPD-GKKIIVLSEGRLLNLGNATGHPSFVMSNSFADQTLAQIELFTK--PGDYPTGVYTLPKHLDEKVARLHLDALGVKLTTLRPEQASYIGVDVDGPYKSDHYRY 482          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_RHIEC (Adenosylhomocysteinase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=ahcY PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.547e-43
Identity = 94/162 (58.02%), Postives = 116/162 (71.60%), Query Frame = -3
Query:  296 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 781
            TTGNKD+I +DHM++MK+ AIV NIGHFDNEI+V  L     +K   +KPQ D   FP+ N  II+L+EGRL+NLG ATGHPSFVMS SFTNQ +AQ+EL+ +   G+YE KVY+LPKHLDEKV           LT+L++EQA YI V   GP+K  HYRY
Sbjct:  311 TTGNKDVIRIDHMRQMKDMAIVGNIGHFDNEIEVAALRN---LKWTNVKPQVDLIEFPKGNR-IILLSEGRLLNLGNATGHPSFVMSASFTNQTLAQIELFTKP--GQYENKVYILPKHLDEKVARLHLDKLGVKLTQLSEEQAAYIGVKPQGPFKSDHYRY 466          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_METPB (Adenosylhomocysteinase OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=ahcY PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.547e-43
Identity = 94/161 (58.39%), Postives = 115/161 (71.43%), Query Frame = -3
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGNKDII ++HM+ MK+ AIVCNIGHFDNEI V GL+    +K   IKPQ D   F + +  II+L+EGRL+NLG ATGHPSFVMS SFTNQ +AQ+ELW   + GKYE++VY LPK LDEKV           L++L  +QA YI VS +GP+KP HYRY
Sbjct:  314 TGNKDIITIEHMRAMKDRAIVCNIGHFDNEIQVAGLKN---LKWQNIKPQVDEIEFADGHR-IILLSEGRLVNLGNATGHPSFVMSASFTNQTLAQIELW--TNPGKYERQVYTLPKTLDEKVAALHLEKIGVKLSKLRPDQAAYIGVSQNGPFKPEHYRY 468          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_FLAJ1 (Adenosylhomocysteinase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=ahcY PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.547e-43
Identity = 88/162 (54.32%), Postives = 112/162 (69.14%), Query Frame = -3
Query:  296 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 781
            TTGNKDI++ +H ++MK+  +VCNIGHFDNEID+  L    G  +I IKPQ D++        II+LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+ELW   ++  Y+ +VY+LPKHLDEKV           L  L ++QA YI V   GP+KP +YRY
Sbjct:  281 TTGNKDIVLGEHFEQMKDKTVVCNIGHFDNEIDMAWLNKNHGASKIEIKPQVDKYNI--NGKDIIILAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELW--NNSAAYKNEVYMLPKHLDEKVAALHLAKLGVELEVLREDQAAYIGVEVQGPFKPEYYRY 438          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_DESDG (Adenosylhomocysteinase OS=Desulfovibrio desulfuricans (strain G20) GN=ahcY PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.547e-43
Identity = 95/161 (59.01%), Postives = 110/161 (68.32%), Query Frame = -3
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGN  +I  +HM++MK+ AIVCNIGHFDNEID+  LE       + IKPQ D+W      S IIVLAEGRL+NLGCATGHPSFVMS SFTNQV+AQLEL    S    E+KVY+LPK LDE+V           LT LT EQA+YI V   GP+KP HYRY
Sbjct:  323 TGNFKVITGEHMERMKDEAIVCNIGHFDNEIDMAYLEDSTECSCLNIKPQVDKWTLKSGRS-IIVLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQLEL---ASNPDLERKVYILPKKLDEEVARLHLARLGAKLTTLTDEQAEYIGVDKTGPFKPDHYRY 479          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_STRCO (Adenosylhomocysteinase OS=Streptomyces coelicolor GN=ahcY PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.020e-43
Identity = 93/162 (57.41%), Postives = 110/162 (67.90%), Query Frame = -3
Query:  296 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 781
            TTGNKDIIM   M KMK+ AIV NIGHFDNEID+ GL   PG+ +  +KPQ   W +P+    +IVL+EGRL+NLG ATGHPSFVMS SF +Q +AQ+EL+ +    +Y   VYVLPKHLDEKV           LT L  EQADYI V  +GPYK  HYRY
Sbjct:  327 TTGNKDIIMAKDMAKMKHQAIVGNIGHFDNEIDMAGLAQTPGIVKDEVKPQVHTWTYPD-GKVLIVLSEGRLLNLGNATGHPSFVMSNSFADQTLAQIELFTKPD--EYPTDVYVLPKHLDEKVARLHLDSLGVKLTTLRPEQADYIGVKVEGPYKADHYRY 485          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_PLACH (Adenosylhomocysteinase OS=Plasmodium chabaudi GN=PC000295.02.0 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.020e-43
Identity = 90/162 (55.56%), Postives = 113/162 (69.75%), Query Frame = -3
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEK-KVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGN DII ++H+ KMKNNA+V NIGHFD+EI +  L ++ G++   +KPQ DR   P  N  IIVLA+GRL+NL CATGHP+FVMS SF NQV AQLELW+ ++TGKYEK K Y+LPK LDEKV           LT L   Q +++ VS +GP+K   YRY
Sbjct:  319 TGNVDIIKLEHLLKMKNNAVVGNIGHFDDEIQIADLFSHEGIEIENVKPQVDRVTLPNGNK-IIVLAQGRLLNLACATGHPAFVMSFSFCNQVFAQLELWENRNTGKYEKNKSYILPKELDEKVAYYHLKKLNATLTELDDNQCEFLGVSKNGPFKSEAYRY 479          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_BURPP (Adenosylhomocysteinase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=ahcY PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.020e-43
Identity = 94/161 (58.39%), Postives = 112/161 (69.57%), Query Frame = -3
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGN  +I  DHMK M++NAIVCNIGHFD+EIDV     Y   +   IKPQ D  +FP+    +I+LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+EL+ +    KYE KVYVLPKHLDEKV           LT L+ +QA YI V  +GP+KP HYRY
Sbjct:  319 TGNYHVIGHDHMKAMRHNAIVCNIGHFDSEIDVASTRQY---QWDNIKPQVDHIIFPD-GKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTQGE--KYENKVYVLPKHLDEKVARLHLARIGANLTVLSDDQAGYIGVDKNGPFKPNHYRY 473          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_SPHAL (Adenosylhomocysteinase OS=Sphingopyxis alaskensis GN=ahcY PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.639e-43
Identity = 91/161 (56.52%), Postives = 110/161 (68.32%), Query Frame = -3
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGN D+I  +HM  MKN AIVCNIGHFD+EI +  L  Y   K   +KPQ D   FP+    II+L++GRL+NLG ATGHPSFVMS SFTNQ +AQ+ELW      +Y+  VYVLPKHLDEKV           LT+LT++QADYI V  +GP+KP HYRY
Sbjct:  318 TGNADVITAEHMAAMKNMAIVCNIGHFDSEIQIAALANY---KWTEVKPQVDLVEFPDGKQ-IIILSKGRLVNLGNATGHPSFVMSASFTNQTLAQIELWTRSE--QYQNDVYVLPKHLDEKVAALHLEKLGVKLTKLTQKQADYIGVPVEGPFKPDHYRY 472          
The following BLAST results are available for this feature:
BLAST of CX043270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 243
Match NameE-valueIdentityDescription
SAHH_RHOPA9.069e-4459.01Adenosylhomocysteinase OS=Rhodopseudomonas palustr... [more]
SAHH_STRAA1.547e-4358.64Adenosylhomocysteinase OS=Streptomyces argillaceus... [more]
SAHH_RHIEC1.547e-4358.02Adenosylhomocysteinase OS=Rhizobium etli (strain C... [more]
SAHH_METPB1.547e-4358.39Adenosylhomocysteinase OS=Methylobacterium populi ... [more]
SAHH_FLAJ11.547e-4354.32Adenosylhomocysteinase OS=Flavobacterium johnsonia... [more]
SAHH_DESDG1.547e-4359.01Adenosylhomocysteinase OS=Desulfovibrio desulfuric... [more]
SAHH_STRCO2.020e-4357.41Adenosylhomocysteinase OS=Streptomyces coelicolor ... [more]
SAHH_PLACH2.020e-4355.56Adenosylhomocysteinase OS=Plasmodium chabaudi GN=P... [more]
SAHH_BURPP2.020e-4358.39Adenosylhomocysteinase OS=Burkholderia phytofirman... [more]
SAHH_SPHAL2.639e-4356.52Adenosylhomocysteinase OS=Sphingopyxis alaskensis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A03_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A03-B6-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043270 ID=CX043270; Name=CX043270; organism=Citrus sinensis; type=EST; length=783bp
GTAAACAATAAGGATAACAAGATGCAGCAAAGCAAGCAAAACTTAAAACT
GCATCAAATACAACATAATCCAACACGGCCCCATCCAAAACCTTATTCAA
ATCCCAAATGGTCTTCAATCAACTGAAACAAATCCGTTTCTTTCCTCCAA
CTTTCCCACCACCCAAACACACACTACTACCAAATTTAAACCTAACATCC
TACTACAGATCATCATTGAAAACAATCAAGCCGGCCAAATATTTTGTTTC
TTTCCCTCAAAACATTCACTCTTCTTCTTCTTCTTCTTCCACTTAGTACC
TGTAGTGAAGAGGCTTGTAAGGACCATCGGCGGACACACTGATGTAGTCA
GCCTGCTCCTTGGTGAGCCTGGTGAGCTTAGCTCCAAGTTTGCCAAGGTG
AAGAGCAGCAACCTTCTCATCGAGGTGCTTGGGCAGAACATACACCTTCT
TCTCGTACTTGCCGGTGCTCTTCTCCTTCCAGAGCTCAAGCTGGGCAATC
ACCTGATTGGTGAAGGAACAGGACATCACAAAGCTGGGGTGCCCAGTGGC
ACATCCCAAGTTCATGAGACGTCCCTCAGCCAACACGATGATGCCTGAGT
TGGTCTCGGGGAAGACCCACCTATCAGTTTGGGGCTTGATGGTAATGCGC
TTAACACCCGGGTAGGTCTCAAGACCGAGCACATCAATTTCATTATCAAA
GTGACCAATGTTGCAAACAATTGCATTGTTCTTCATCTTCTTCATGTGGT
CAACCATGATGATGTCCTTGTTACCGGTGGTGG
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