CX043270

Overview
NameCX043270
Unique NameCX043270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043270_ssr270 microsatellite CX043270_ssr270:270..287. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1840 contig Csv1_Contig1840:1097..1879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_METEP (Adenosylhomocysteinase OS=Methylobacterium extorquens (strain PA1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.639e-43
Identity = 94/161 (58.39%), Postives = 114/161 (70.81%), Query Frame = -3
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGNKDII ++HM+ MK+ AIVCNIGHFDNEI V GL+    +K   IKPQ D   F + +  II+L+EGRL+NLG ATGHPSFVMS SFTNQ +AQ+ELW   + GKYE++VY LPK LDEKV           L++L  +QA YI VS  GP+KP HYRY
Sbjct:  314 TGNKDIITIEHMRAMKDRAIVCNIGHFDNEIQVAGLKN---LKWQNIKPQVDEIEFADGHR-IILLSEGRLVNLGNATGHPSFVMSASFTNQTLAQIELW--TNPGKYERQVYTLPKALDEKVAALHLEKIGVKLSKLRPDQAAYIGVSQTGPFKPEHYRY 468          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_METC4 (Adenosylhomocysteinase OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=ahcY PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.639e-43
Identity = 94/161 (58.39%), Postives = 114/161 (70.81%), Query Frame = -3
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGNKDII ++HM+ MK+ AIVCNIGHFDNEI V GL+    +K   IKPQ D   F + +  II+L+EGRL+NLG ATGHPSFVMS SFTNQ +AQ+ELW   + GKYE++VY LPK LDEKV           L++L  +QA YI VS  GP+KP HYRY
Sbjct:  314 TGNKDIITIEHMRAMKDRAIVCNIGHFDNEIQVAGLKN---LKWQNIKPQVDEIEFADGHR-IILLSEGRLVNLGNATGHPSFVMSASFTNQTLAQIELW--TNPGKYERQVYTLPKALDEKVAALHLEKIGVKLSKLRPDQAAYIGVSQTGPFKPEHYRY 468          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_SOLUE (Adenosylhomocysteinase OS=Solibacter usitatus (strain Ellin6076) GN=ahcY PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.446e-43
Identity = 93/161 (57.76%), Postives = 110/161 (68.32%), Query Frame = -3
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGN +II ++HM+ MK+ AIVCNIGHFDNEI +  L      KR+ IKPQ D + FP   S I +LAEGRL+NLGCATGHPSFVMS SF NQ +AQL+LWK K T  Y+  VY LPK LDE+V           LT LT  QA+Y+ V  +GPYKP HYRY
Sbjct:  319 TGNCEIITLEHMRLMKDQAIVCNIGHFDNEIQMDRLNE-SDAKRLQIKPQVDMYTFPG-GSSIFILAEGRLVNLGCATGHPSFVMSNSFANQTLAQLDLWKNKDT--YKVGVYTLPKKLDEEVARLHLEKIGVKLTTLTPAQAEYLGVPVEGPYKPDHYRY 475          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_NITEU (Adenosylhomocysteinase OS=Nitrosomonas europaea GN=ahcY PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.446e-43
Identity = 94/162 (58.02%), Postives = 113/162 (69.75%), Query Frame = -3
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGK-YEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGN  +I  DHM KMK+ +I+CNIGHFD+EID+  ++ Y       IKPQ D  +FP T   IIVLA+GRL+NLGCATGHPSFVMS SFTNQV+AQ+ELW+    GK Y+KKVYVLPK LDE V           LT LT EQA Y+++  +GPYKP  YRY
Sbjct:  324 TGNLRVITHDHMLKMKDQSIICNIGHFDSEIDIASVQKYQWEN---IKPQVDHVIFP-TGRRIIVLAQGRLVNLGCATGHPSFVMSSSFTNQVLAQIELWQ---NGKDYQKKVYVLPKRLDEMVARLHLGKLGVKLTELTDEQAHYLNLDKNGPYKPEMYRY 478          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_METNO (Adenosylhomocysteinase OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=ahcY PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.446e-43
Identity = 93/161 (57.76%), Postives = 113/161 (70.19%), Query Frame = -3
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGNKD+I +DHM+ MK+ AIVCNIGHFDNEI V GL     +K   IKPQ D   F + +  II+L+EGRL+NLG A GHPSFVMS SFTNQ +AQ+ELW  +  GKY+++VY LPK LDEKV           LT+L  +QA YI VS +GP+KP HYRY
Sbjct:  314 TGNKDVITLDHMRAMKDRAIVCNIGHFDNEIQVAGLRN---LKWTNIKPQVDEIEFADGHR-IILLSEGRLVNLGNAMGHPSFVMSASFTNQTLAQIELWTNQ--GKYDRQVYTLPKALDEKVAALHLEKIGVKLTKLRPDQAAYIGVSENGPFKPDHYRY 468          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_PLAYO (Adenosylhomocysteinase OS=Plasmodium yoelii yoelii GN=PY02893 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.878e-43
Identity = 90/162 (55.56%), Postives = 111/162 (68.52%), Query Frame = -3
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEK-KVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGN DII ++H+ KMKNNA+V NIGHFD+EI V  L  + G++   +KPQ DR   P  N  IIVLA+GRL+NL CATGHP+FVMS SF NQ+ AQLELW+ ++TGKYEK K Y+LPK LDEKV           LT L   Q +++ VS  GP+K   YRY
Sbjct:  319 TGNVDIIKLEHLLKMKNNAVVGNIGHFDDEIQVSDLFNHEGIEIENVKPQVDRVTLPNGNK-IIVLAQGRLLNLSCATGHPAFVMSFSFCNQIFAQLELWENRNTGKYEKNKSYILPKELDEKVAFYHLKKLNATLTELDDNQCEFLGVSKTGPFKSEAYRY 479          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_GEOSL (Adenosylhomocysteinase OS=Geobacter sulfurreducens GN=ahcY PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.878e-43
Identity = 94/162 (58.02%), Postives = 112/162 (69.14%), Query Frame = -3
Query:  296 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 781
            TTGN ++I  DHMK M++NAIVCNIGHFDNEI+V  L+ Y       IKPQ D  +FP++   II+LAEGRL+NLGCATGHPS+VMS SF NQ +AQ+EL+   + GKY   VY+LPK LDEKV           LT LT EQA YI V  +GPYK  HYRY
Sbjct:  320 TTGNINVITHDHMKAMRHNAIVCNIGHFDNEIEVAALKQYQWEN---IKPQVDHIIFPDSKR-IILLAEGRLVNLGCATGHPSYVMSSSFANQTLAQIELF--CNPGKYPVGVYMLPKELDEKVARLQLKTLGAMLTELTDEQAAYIGVPKNGPYKSAHYRY 475          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_VARPS (Adenosylhomocysteinase OS=Variovorax paradoxus (strain S110) GN=ahcY PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.678e-43
Identity = 96/162 (59.26%), Postives = 109/162 (67.28%), Query Frame = -3
Query:  296 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 781
            TTGN+D+I  +HM  MK+ AIVCNIGHFDNEIDV  +E Y   +   IKPQ D   FP+    II+LA+GRL+NLGC TGHPSFVMS SF NQ IAQ+EL+  K       KVYVLPKHLDEKV           LT LT EQA YI VS +GPYKP  YRY
Sbjct:  323 TTGNRDVIRHEHMAAMKDQAIVCNIGHFDNEIDVASIEKYEWEE---IKPQVDHITFPDGKK-IILLAKGRLVNLGCGTGHPSFVMSSSFANQTIAQIELF-TKPDAYQAGKVYVLPKHLDEKVARLHLKKVGAMLTELTDEQAAYIGVSKNGPYKPDTYRY 479          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_METCA (Adenosylhomocysteinase OS=Methylococcus capsulatus GN=ahcY PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.678e-43
Identity = 96/161 (59.63%), Postives = 109/161 (67.70%), Query Frame = -3
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGN  +I  DHM KMK+ AIVCNIGHFD+EI+V  +  Y       IKPQ D  V P     II+LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+EL+   +  KYE KVYVLPKHLDEKV           LT L+ EQA YI V  +GPYKP HYRY
Sbjct:  318 TGNVGVITHDHMVKMKDQAIVCNIGHFDSEIEVAAMRQYTWEN---IKPQVDHIVLPNGRR-IILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFCHGA--KYENKVYVLPKHLDEKVARLHLKKIGARLTELSDEQAAYIGVPKEGPYKPDHYRY 472          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_MARMM (Adenosylhomocysteinase OS=Maricaulis maris (strain MCS10) GN=ahcY PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.678e-43
Identity = 94/161 (58.39%), Postives = 110/161 (68.32%), Query Frame = -3
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGNKDI+ VDHM+ MK+ AIVCNIGHFDNEI V  L+ Y       +KPQ D   FPE +  II+L+EGRL+NLG ATGHPSFVMS SFTNQ +AQ+ELW +     Y  +VY+LPKHLDEKV           LT L+ EQADYI V   GP+K  HYRY
Sbjct:  315 TGNKDILTVDHMRAMKDMAIVCNIGHFDNEIQVESLKNYQWTN---VKPQVDLVNFPEGHR-IILLSEGRLVNLGNATGHPSFVMSASFTNQTLAQIELWTKGE--NYTNEVYILPKHLDEKVAALHLDKLGAKLTVLSDEQADYIGVPQHGPFKAEHYRY 469          
The following BLAST results are available for this feature:
BLAST of CX043270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 243
Match NameE-valueIdentityDescription
SAHH_METEP2.639e-4358.39Adenosylhomocysteinase OS=Methylobacterium extorqu... [more]
SAHH_METC42.639e-4358.39Adenosylhomocysteinase OS=Methylobacterium chlorom... [more]
SAHH_SOLUE3.446e-4357.76Adenosylhomocysteinase OS=Solibacter usitatus (str... [more]
SAHH_NITEU3.446e-4358.02Adenosylhomocysteinase OS=Nitrosomonas europaea GN... [more]
SAHH_METNO3.446e-4357.76Adenosylhomocysteinase OS=Methylobacterium nodulan... [more]
SAHH_PLAYO5.878e-4355.56Adenosylhomocysteinase OS=Plasmodium yoelii yoelii... [more]
SAHH_GEOSL5.878e-4358.02Adenosylhomocysteinase OS=Geobacter sulfurreducens... [more]
SAHH_VARPS7.678e-4359.26Adenosylhomocysteinase OS=Variovorax paradoxus (st... [more]
SAHH_METCA7.678e-4359.63Adenosylhomocysteinase OS=Methylococcus capsulatus... [more]
SAHH_MARMM7.678e-4358.39Adenosylhomocysteinase OS=Maricaulis maris (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A03_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A03-B6-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043270 ID=CX043270; Name=CX043270; organism=Citrus sinensis; type=EST; length=783bp
GTAAACAATAAGGATAACAAGATGCAGCAAAGCAAGCAAAACTTAAAACT
GCATCAAATACAACATAATCCAACACGGCCCCATCCAAAACCTTATTCAA
ATCCCAAATGGTCTTCAATCAACTGAAACAAATCCGTTTCTTTCCTCCAA
CTTTCCCACCACCCAAACACACACTACTACCAAATTTAAACCTAACATCC
TACTACAGATCATCATTGAAAACAATCAAGCCGGCCAAATATTTTGTTTC
TTTCCCTCAAAACATTCACTCTTCTTCTTCTTCTTCTTCCACTTAGTACC
TGTAGTGAAGAGGCTTGTAAGGACCATCGGCGGACACACTGATGTAGTCA
GCCTGCTCCTTGGTGAGCCTGGTGAGCTTAGCTCCAAGTTTGCCAAGGTG
AAGAGCAGCAACCTTCTCATCGAGGTGCTTGGGCAGAACATACACCTTCT
TCTCGTACTTGCCGGTGCTCTTCTCCTTCCAGAGCTCAAGCTGGGCAATC
ACCTGATTGGTGAAGGAACAGGACATCACAAAGCTGGGGTGCCCAGTGGC
ACATCCCAAGTTCATGAGACGTCCCTCAGCCAACACGATGATGCCTGAGT
TGGTCTCGGGGAAGACCCACCTATCAGTTTGGGGCTTGATGGTAATGCGC
TTAACACCCGGGTAGGTCTCAAGACCGAGCACATCAATTTCATTATCAAA
GTGACCAATGTTGCAAACAATTGCATTGTTCTTCATCTTCTTCATGTGGT
CAACCATGATGATGTCCTTGTTACCGGTGGTGG
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