CX043270

Overview
NameCX043270
Unique NameCX043270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043270_ssr270 microsatellite CX043270_ssr270:270..287. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1840 contig Csv1_Contig1840:1097..1879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_JANMA (Adenosylhomocysteinase OS=Janthinobacterium sp. (strain Marseille) GN=ahcY PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.678e-43
Identity = 94/161 (58.39%), Postives = 108/161 (67.08%), Query Frame = -3 
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGN  +I  +HMKKMK+ AIVCNIGHFDNEI+V  L+ Y       IKPQ D  +FP+    II+LAEGRL+NLGC TGHPS+VMS SF NQ IAQ+EL+   +T  Y   VY LPKHLDEKV           LT LT EQA+YI V   GPYKP HYRY
Sbjct:  325 TGNYHVITHEHMKKMKDQAIVCNIGHFDNEIEVAALKQYTWEN---IKPQVDHIIFPD-GKRIILLAEGRLVNLGCGTGHPSYVMSSSFANQTIAQIELY--ANTKNYPVGVYTLPKHLDEKVARLQLKKLNAQLTTLTTEQANYIGVQQTGPYKPEHYRY 479
[Close]
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_BRASB (Adenosylhomocysteinase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=ahcY PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.678e-43
Identity = 91/161 (56.52%), Postives = 110/161 (68.32%), Query Frame = -3 
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGNKDII ++HM+ MK+ AIVCNIGHFDNEI V  L+    +K   IKPQ D   FP+    +I+L+EGRL+NLG A GHPSFVMS SFTNQ +AQ+EL+     GKY+K+VYVLPK LDEKV           LT L  +QA YI V  +GP+K  HYRY
Sbjct:  317 TGNKDIITIEHMRAMKDRAIVCNIGHFDNEIQVASLKN---LKWTNIKPQVDEITFPD-GKRMILLSEGRLVNLGNAMGHPSFVMSASFTNQTLAQIELYANNKDGKYKKEVYVLPKSLDEKVARLHLAKIGVKLTELRPDQAAYIGVKQEGPFKSDHYRY 473
[Close]
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_HYPNA (Adenosylhomocysteinase OS=Hyphomonas neptunium (strain ATCC 15444) GN=ahcY PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.003e-42
Identity = 94/161 (58.39%), Postives = 110/161 (68.32%), Query Frame = -3 
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGNKDI+ VDHM+ MK+ AIVCNIGHFDNEI V GL  +   +   IKPQ D   FP+    II+L+EGRL+NLG ATGHPSFVMS SFTNQ +AQ+EL       +Y+ KVY LPKHLDEKV           LT+L+ EQA YI V   GP+KP HYRY
Sbjct:  315 TGNKDILTVDHMRAMKDMAIVCNIGHFDNEIQVEGLRNF---QWTNIKPQVDMITFPD-GKRIILLSEGRLVNLGNATGHPSFVMSASFTNQTLAQIEL--HLRGNEYDNKVYTLPKHLDEKVARLHLDKLGVQLTKLSGEQAAYIGVEQTGPFKPEHYRY 469
[Close]
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_COREF (Adenosylhomocysteinase OS=Corynebacterium efficiens GN=ahcY PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.310e-42
Identity = 95/161 (59.01%), Postives = 113/161 (70.19%), Query Frame = -3 
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGNKDII  + M KMK++A++ NIGHFDNEID+  L     V R TIKPQ D + FP   S IIVL+EGRL+NLG ATGHPSFVMS SF +Q IAQ+EL++ +  G+YE +VY LPK LDEKV           LT LTKEQA+YI V   GP+KP HYRY
Sbjct:  321 TGNKDIISYEQMLKMKDHALLGNIGHFDNEIDMHSLLHRDDVIRTTIKPQVDEFTFPNGKS-IIVLSEGRLLNLGNATGHPSFVMSTSFADQTIAQIELFQNE--GQYENQVYRLPKILDEKVARIHVEALGGKLTELTKEQAEYIGVDVAGPFKPEHYRY 478
[Close]
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_BURPS (Adenosylhomocysteinase OS=Burkholderia pseudomallei GN=ahcY PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.310e-42
Identity = 93/161 (57.76%), Postives = 110/161 (68.32%), Query Frame = -3 
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGN  +I  DHMK M++NAIVCNIGHFD+EIDV     Y       IKPQ D  +FP+    +I+LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+EL+     G+Y  KVYVLPKHLDEKV           L+ L+ +QA YI VS  GP+KP HYRY
Sbjct:  319 TGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTRQYQWEN---IKPQVDHIIFPD-GKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTR--GGEYANKVYVLPKHLDEKVARLHLARIGAQLSELSDDQAAYIGVSKAGPFKPDHYRY 473
[Close]
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_BURP6 (Adenosylhomocysteinase OS=Burkholderia pseudomallei (strain 668) GN=ahcY PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.310e-42
Identity = 93/161 (57.76%), Postives = 110/161 (68.32%), Query Frame = -3 
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGN  +I  DHMK M++NAIVCNIGHFD+EIDV     Y       IKPQ D  +FP+    +I+LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+EL+     G+Y  KVYVLPKHLDEKV           L+ L+ +QA YI VS  GP+KP HYRY
Sbjct:  319 TGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTRQYQWEN---IKPQVDHIIFPD-GKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTR--GGEYANKVYVLPKHLDEKVARLHLARIGAQLSELSDDQAAYIGVSKAGPFKPDHYRY 473
[Close]
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_BURP1 (Adenosylhomocysteinase OS=Burkholderia pseudomallei (strain 1710b) GN=ahcY PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.310e-42
Identity = 93/161 (57.76%), Postives = 110/161 (68.32%), Query Frame = -3 
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGN  +I  DHMK M++NAIVCNIGHFD+EIDV     Y       IKPQ D  +FP+    +I+LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+EL+     G+Y  KVYVLPKHLDEKV           L+ L+ +QA YI VS  GP+KP HYRY
Sbjct:  319 TGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTRQYQWEN---IKPQVDHIIFPD-GKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTR--GGEYANKVYVLPKHLDEKVARLHLARIGAQLSELSDDQAAYIGVSKAGPFKPDHYRY 473
[Close]
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_BURP0 (Adenosylhomocysteinase OS=Burkholderia pseudomallei (strain 1106a) GN=ahcY PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.310e-42
Identity = 93/161 (57.76%), Postives = 110/161 (68.32%), Query Frame = -3 
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGN  +I  DHMK M++NAIVCNIGHFD+EIDV     Y       IKPQ D  +FP+    +I+LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+EL+     G+Y  KVYVLPKHLDEKV           L+ L+ +QA YI VS  GP+KP HYRY
Sbjct:  319 TGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTRQYQWEN---IKPQVDHIIFPD-GKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTR--GGEYANKVYVLPKHLDEKVARLHLARIGAQLSELSDDQAAYIGVSKAGPFKPDHYRY 473
[Close]
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_BURMS (Adenosylhomocysteinase OS=Burkholderia mallei (strain SAVP1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.310e-42
Identity = 93/161 (57.76%), Postives = 110/161 (68.32%), Query Frame = -3 
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGN  +I  DHMK M++NAIVCNIGHFD+EIDV     Y       IKPQ D  +FP+    +I+LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+EL+     G+Y  KVYVLPKHLDEKV           L+ L+ +QA YI VS  GP+KP HYRY
Sbjct:  319 TGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTRQYQWEN---IKPQVDHIIFPD-GKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTR--GGEYANKVYVLPKHLDEKVARLHLARIGAQLSELSDDQAAYIGVSKAGPFKPDHYRY 473
[Close]
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_BURMA (Adenosylhomocysteinase OS=Burkholderia mallei GN=ahcY PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.310e-42
Identity = 93/161 (57.76%), Postives = 110/161 (68.32%), Query Frame = -3 
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGN  +I  DHMK M++NAIVCNIGHFD+EIDV     Y       IKPQ D  +FP+    +I+LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+EL+     G+Y  KVYVLPKHLDEKV           L+ L+ +QA YI VS  GP+KP HYRY
Sbjct:  319 TGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTRQYQWEN---IKPQVDHIIFPD-GKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTR--GGEYANKVYVLPKHLDEKVARLHLARIGAQLSELSDDQAAYIGVSKAGPFKPDHYRY 473
The following BLAST results are available for this feature:
BLAST of CX043270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 243
Match NameE-valueIdentityDescription
SAHH_JANMA7.678e-4358.39Adenosylhomocysteinase OS=Janthinobacterium sp. (s... [more]
SAHH_BRASB7.678e-4356.52Adenosylhomocysteinase OS=Bradyrhizobium sp. (stra... [more]
SAHH_HYPNA1.003e-4258.39Adenosylhomocysteinase OS=Hyphomonas neptunium (st... [more]
SAHH_COREF1.310e-4259.01Adenosylhomocysteinase OS=Corynebacterium efficien... [more]
SAHH_BURPS1.310e-4257.76Adenosylhomocysteinase OS=Burkholderia pseudomalle... [more]
SAHH_BURP61.310e-4257.76Adenosylhomocysteinase OS=Burkholderia pseudomalle... [more]
SAHH_BURP11.310e-4257.76Adenosylhomocysteinase OS=Burkholderia pseudomalle... [more]
SAHH_BURP01.310e-4257.76Adenosylhomocysteinase OS=Burkholderia pseudomalle... [more]
SAHH_BURMS1.310e-4257.76Adenosylhomocysteinase OS=Burkholderia mallei (str... [more]
SAHH_BURMA1.310e-4257.76Adenosylhomocysteinase OS=Burkholderia mallei GN=a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A03_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A03-B6-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043270 ID=CX043270; Name=CX043270; organism=Citrus sinensis; type=EST; length=783bp
GTAAACAATAAGGATAACAAGATGCAGCAAAGCAAGCAAAACTTAAAACT
GCATCAAATACAACATAATCCAACACGGCCCCATCCAAAACCTTATTCAA
ATCCCAAATGGTCTTCAATCAACTGAAACAAATCCGTTTCTTTCCTCCAA
CTTTCCCACCACCCAAACACACACTACTACCAAATTTAAACCTAACATCC
TACTACAGATCATCATTGAAAACAATCAAGCCGGCCAAATATTTTGTTTC
TTTCCCTCAAAACATTCACTCTTCTTCTTCTTCTTCTTCCACTTAGTACC
TGTAGTGAAGAGGCTTGTAAGGACCATCGGCGGACACACTGATGTAGTCA
GCCTGCTCCTTGGTGAGCCTGGTGAGCTTAGCTCCAAGTTTGCCAAGGTG
AAGAGCAGCAACCTTCTCATCGAGGTGCTTGGGCAGAACATACACCTTCT
TCTCGTACTTGCCGGTGCTCTTCTCCTTCCAGAGCTCAAGCTGGGCAATC
ACCTGATTGGTGAAGGAACAGGACATCACAAAGCTGGGGTGCCCAGTGGC
ACATCCCAAGTTCATGAGACGTCCCTCAGCCAACACGATGATGCCTGAGT
TGGTCTCGGGGAAGACCCACCTATCAGTTTGGGGCTTGATGGTAATGCGC
TTAACACCCGGGTAGGTCTCAAGACCGAGCACATCAATTTCATTATCAAA
GTGACCAATGTTGCAAACAATTGCATTGTTCTTCATCTTCTTCATGTGGT
CAACCATGATGATGTCCTTGTTACCGGTGGTGG
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