CX043270

Overview
NameCX043270
Unique NameCX043270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043270_ssr270 microsatellite CX043270_ssr270:270..287. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1840 contig Csv1_Contig1840:1097..1879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_RHILO (Adenosylhomocysteinase OS=Rhizobium loti GN=ahcY PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.448e-41
Identity = 90/162 (55.56%), Postives = 112/162 (69.14%), Query Frame = -3
Query:  296 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 781
            TTGNKD++ +DHM+ MK+  IV NIGHFDNEI V  L     +K   +KPQ D   FP+    +I+L+EGRL+NLG ATGHPSFVMS SFTNQV+AQ+EL+ +    +Y+ +VYVLPKHLDEKV           LT L+ EQA YI V+  GP+KP HYRY
Sbjct:  311 TTGNKDVVTLDHMRSMKDMVIVGNIGHFDNEIQVASLRN---LKWTNVKPQVDMITFPD-GKRMILLSEGRLLNLGNATGHPSFVMSASFTNQVLAQIELFTKGE--QYQNQVYVLPKHLDEKVARLHLDKLGARLTELSGEQAAYIGVTPQGPFKPEHYRY 466          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_PROM4 (Adenosylhomocysteinase OS=Prochlorococcus marinus (strain MIT 9211) GN=ahcY PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.448e-41
Identity = 93/161 (57.76%), Postives = 110/161 (68.32%), Query Frame = -3
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGN ++I  DH+ +MK+ AIVCNIGHFDNEIDV  L+ Y       IKPQ D    P  N  II+LAEGRL+NLGCATGHPSFVMS SFTNQV+AQ+EL+ + S   Y+ +VY+LPKHLDE V           LT LT+EQA YI+V   GPYK   YRY
Sbjct:  322 TGNFNVITHDHLIRMKDEAIVCNIGHFDNEIDVASLKPYQWEN---IKPQVDHITLPSGNK-IILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELFTQGS--NYDNQVYILPKHLDELVARLHLDKIGANLTELTEEQAAYINVPIKGPYKSEQYRY 476          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_ROSDO (Adenosylhomocysteinase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=ahcY PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.891e-41
Identity = 91/162 (56.17%), Postives = 109/162 (67.28%), Query Frame = -3
Query:  296 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 781
            TTGNKD+I ++HM+ MK+ AIV NIGHFDNEI V  L+ +   K   IK Q D    P  N  +I+L+EGRL+NLG ATGHPSFVMS SFTNQV+AQ+ELW       Y+ +VY+LPKHLDEKV           LT L  EQA YI V  +GP+KP HYRY
Sbjct:  307 TTGNKDVIRIEHMRAMKDMAIVGNIGHFDNEIQVAALKNH---KWTNIKEQVDMIEMPNGNR-LILLSEGRLLNLGNATGHPSFVMSASFTNQVLAQIELWTRADA--YDNEVYILPKHLDEKVARLHLDRIGVKLTPLDPEQAAYIGVKPEGPFKPEHYRY 462          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_BORPD (Adenosylhomocysteinase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=ahcY PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.891e-41
Identity = 92/161 (57.14%), Postives = 111/161 (68.94%), Query Frame = -3
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGN  +I  +HM+ MK+ AIVCNIGHFDNEIDV  L+     +   IKPQ D  VFP+    II+LA+GRL+NLGCATGHPSFVMS SF NQ IAQ+EL+  ++      +VYVLPKHLDEKV           LT L ++QADYI+V  +GPYKP HYRY
Sbjct:  317 TGNYHVITREHMQAMKDQAIVCNIGHFDNEIDVAALDDCQWEE---IKPQVDHVVFPD-GKRIILLAKGRLVNLGCATGHPSFVMSSSFANQTIAQIELY-TRNEAYTRGQVYVLPKHLDEKVARLHLKKLGAKLTSLRQDQADYINVPVEGPYKPDHYRY 472          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_OCHA4 (Adenosylhomocysteinase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=ahcY PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.226e-41
Identity = 92/162 (56.79%), Postives = 111/162 (68.52%), Query Frame = -3
Query:  296 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 781
            TTGNKD+I +DHM+K K+ AIV NIGHFDNEI V  L     +K   +KPQ D   FP+    II+L+EGRL+NLG ATGHPSFVMS SFTNQV+ Q+EL+    T  Y+ +VYVLPKHLDEKV           LT L++EQA YI V+  GP+K  HYRY
Sbjct:  311 TTGNKDVITIDHMRKFKDMAIVGNIGHFDNEIQVAALRN---LKWTNVKPQVDLIEFPD-GKRIILLSEGRLLNLGNATGHPSFVMSASFTNQVLGQIELFTR--TDAYKNEVYVLPKHLDEKVARLHLDKLGAKLTVLSEEQAAYIGVTPQGPFKSEHYRY 466          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_LEIDO (Adenosylhomocysteinase OS=Leishmania donovani PE=3 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 3.226e-41
Identity = 90/166 (54.22%), Postives = 112/166 (67.47%), Query Frame = -3
Query:  296 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEK----KVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 781
            TTGN DII  +H   M+++AIVCNIGHFD EI V  LE     + + IKPQ DR+   E    II+LA+GRL+NLGCA+GHPSFVMS SFTNQV+AQ+ELW  +  GKY +     V+ LPK LDEKV           LT+LT +QA+YI+   +GP+KP HYRY
Sbjct:  274 TTGNDDIITSEHFPHMRDDAIVCNIGHFDTEIQVGWLEAN-AKEHVEIKPQVDRYTM-ENGRHIILLAKGRLVNLGCASGHPSFVMSNSFTNQVLAQIELWSNRDNGKYPRGDKAGVFFLPKALDEKVAALHLAHVGAKLTKLTPKQAEYINCPVNGPFKPDHYRY 437          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_AZOSE (Adenosylhomocysteinase OS=Azoarcus sp. (strain EbN1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.226e-41
Identity = 91/161 (56.52%), Postives = 106/161 (65.84%), Query Frame = -3
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGN  +I  DHM +MK+ AIVCNIGHFDNEIDV  +E Y   +   IKPQ D  +FP+    II+LA+GRL+NLGCATGHPS+VMS SF NQ IAQ+EL+    T  Y   VY LPKHLDEKV           LT L  +QA YI V  +GPYK  HYRY
Sbjct:  316 TGNYHVIRHDHMARMKDQAIVCNIGHFDNEIDVASIEGYEWEE---IKPQVDHVIFPD-GKRIILLAKGRLVNLGCATGHPSYVMSSSFANQTIAQIELFTR--TADYPVGVYTLPKHLDEKVARLQLKKLNAQLTELRPDQAAYIGVPVEGPYKSAHYRY 470          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_DIAST (Adenosylhomocysteinase OS=Diaphorobacter sp. (strain TPSY) GN=ahcY PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.213e-41
Identity = 94/162 (58.02%), Postives = 108/162 (66.67%), Query Frame = -3
Query:  296 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 781
            TTGN+D+I  +HMK MK+ AIVCNIGHFDNEI V  LE +   + I  KPQ D  +FP+    II+LA+GRL+NLGC TGHPSFVMS SF NQ IAQ+EL+     G    KVYVLPKHLDEKV           LT L+ EQA YI V   GPYKP  YRY
Sbjct:  319 TTGNRDVITFEHMKAMKDQAIVCNIGHFDNEIQVAKLEEHCQWEEI--KPQVDHVIFPD-GKRIILLAKGRLVNLGCGTGHPSFVMSNSFANQTIAQIELFTHPE-GYDVGKVYVLPKHLDEKVARLHLKKVGAMLTELSDEQAAYIGVPKQGPYKPDTYRY 476          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_BRUSU (Adenosylhomocysteinase OS=Brucella suis GN=ahcY PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.213e-41
Identity = 91/162 (56.17%), Postives = 111/162 (68.52%), Query Frame = -3
Query:  296 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 781
            TTGNKD+I +DHM+KMK+  IV NIGHFDNEI V  L     +K   +KPQ D   FP+    +I+L+EGRL+NLG ATGHPSFVMS SFTNQV+ Q+EL+    T  Y+ +VYVLPKHLDEKV           LT L++EQA YI V+  GP+K  HYRY
Sbjct:  311 TTGNKDVITIDHMRKMKDMCIVGNIGHFDNEIQVAALRN---LKWTNVKPQVDLIEFPD-GKRLILLSEGRLLNLGNATGHPSFVMSASFTNQVLGQIELFTR--TDAYKNEVYVLPKHLDEKVARLHLDKLGAKLTVLSEEQAAYIGVTPQGPFKSEHYRY 466          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_BRUSI (Adenosylhomocysteinase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=ahcY PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.213e-41
Identity = 91/162 (56.17%), Postives = 111/162 (68.52%), Query Frame = -3
Query:  296 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 781
            TTGNKD+I +DHM+KMK+  IV NIGHFDNEI V  L     +K   +KPQ D   FP+    +I+L+EGRL+NLG ATGHPSFVMS SFTNQV+ Q+EL+    T  Y+ +VYVLPKHLDEKV           LT L++EQA YI V+  GP+K  HYRY
Sbjct:  311 TTGNKDVITIDHMRKMKDMCIVGNIGHFDNEIQVAALRN---LKWTNVKPQVDLIEFPD-GKRLILLSEGRLLNLGNATGHPSFVMSASFTNQVLGQIELFTR--TDAYKNEVYVLPKHLDEKVARLHLDKLGAKLTVLSEEQAAYIGVTPQGPFKSEHYRY 466          
The following BLAST results are available for this feature:
BLAST of CX043270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 243
Match NameE-valueIdentityDescription
SAHH_RHILO1.448e-4155.56Adenosylhomocysteinase OS=Rhizobium loti GN=ahcY P... [more]
SAHH_PROM41.448e-4157.76Adenosylhomocysteinase OS=Prochlorococcus marinus ... [more]
SAHH_ROSDO1.891e-4156.17Adenosylhomocysteinase OS=Roseobacter denitrifican... [more]
SAHH_BORPD1.891e-4157.14Adenosylhomocysteinase OS=Bordetella petrii (strai... [more]
SAHH_OCHA43.226e-4156.79Adenosylhomocysteinase OS=Ochrobactrum anthropi (s... [more]
SAHH_LEIDO3.226e-4154.22Adenosylhomocysteinase OS=Leishmania donovani PE=3... [more]
SAHH_AZOSE3.226e-4156.52Adenosylhomocysteinase OS=Azoarcus sp. (strain EbN... [more]
SAHH_DIAST4.213e-4158.02Adenosylhomocysteinase OS=Diaphorobacter sp. (stra... [more]
SAHH_BRUSU4.213e-4156.17Adenosylhomocysteinase OS=Brucella suis GN=ahcY PE... [more]
SAHH_BRUSI4.213e-4156.17Adenosylhomocysteinase OS=Brucella suis (strain AT... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A03_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A03-B6-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043270 ID=CX043270; Name=CX043270; organism=Citrus sinensis; type=EST; length=783bp
GTAAACAATAAGGATAACAAGATGCAGCAAAGCAAGCAAAACTTAAAACT
GCATCAAATACAACATAATCCAACACGGCCCCATCCAAAACCTTATTCAA
ATCCCAAATGGTCTTCAATCAACTGAAACAAATCCGTTTCTTTCCTCCAA
CTTTCCCACCACCCAAACACACACTACTACCAAATTTAAACCTAACATCC
TACTACAGATCATCATTGAAAACAATCAAGCCGGCCAAATATTTTGTTTC
TTTCCCTCAAAACATTCACTCTTCTTCTTCTTCTTCTTCCACTTAGTACC
TGTAGTGAAGAGGCTTGTAAGGACCATCGGCGGACACACTGATGTAGTCA
GCCTGCTCCTTGGTGAGCCTGGTGAGCTTAGCTCCAAGTTTGCCAAGGTG
AAGAGCAGCAACCTTCTCATCGAGGTGCTTGGGCAGAACATACACCTTCT
TCTCGTACTTGCCGGTGCTCTTCTCCTTCCAGAGCTCAAGCTGGGCAATC
ACCTGATTGGTGAAGGAACAGGACATCACAAAGCTGGGGTGCCCAGTGGC
ACATCCCAAGTTCATGAGACGTCCCTCAGCCAACACGATGATGCCTGAGT
TGGTCTCGGGGAAGACCCACCTATCAGTTTGGGGCTTGATGGTAATGCGC
TTAACACCCGGGTAGGTCTCAAGACCGAGCACATCAATTTCATTATCAAA
GTGACCAATGTTGCAAACAATTGCATTGTTCTTCATCTTCTTCATGTGGT
CAACCATGATGATGTCCTTGTTACCGGTGGTGG
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