CX043270

Overview
NameCX043270
Unique NameCX043270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043270_ssr270 microsatellite CX043270_ssr270:270..287. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1840 contig Csv1_Contig1840:1097..1879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_DICDI (Adenosylhomocysteinase OS=Dictyostelium discoideum GN=sahA PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.402e-36
Identity = 85/162 (52.47%), Postives = 105/162 (64.81%), Query Frame = -3
Query:  296 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 781
            TTG +DI+  +H   MK +AIVCNIGHFD EIDV  L      K+ T+KPQ DR+        II+LAEGRL+NLGC TGHPSFVMS SF NQ +AQ+ LW +  T +Y   V+ LPK LDE+V           LT LT++Q++Y+SV   GPYK  HYRY
Sbjct:  275 TTGCRDIVRGEHFAVMKEDAIVCNIGHFDCEIDVAWLNA--NAKKDTVKPQVDRYTLAN-GVHIILLAEGRLVNLGCGTGHPSFVMSNSFCNQTLAQIALWTK--TEEYPLGVHFLPKILDEEVARLHLDQLGAKLTTLTEKQSEYLSVPVAGPYKVDHYRY 431          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_YEAST (Adenosylhomocysteinase OS=Saccharomyces cerevisiae GN=SAH1 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.025e-35
Identity = 84/174 (48.28%), Postives = 110/174 (63.22%), Query Frame = -3
Query:  296 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKE------------KSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 781
            TTG +DII  +H   M  +AIVCNIGHFD EIDV  L+     + I IKPQ DR++   +   +I+LA GRL+NLGCATGH SFVMSCSF+NQV+AQ+ L+K             + TG +E  V+VLPK LDE V           LT+L+K Q++Y+ +  +GP+K  HYRY
Sbjct:  278 TTGCRDIINGEHFINMPEDAIVCNIGHFDIEIDVAWLKAN-AKECINIKPQVDRYLL-SSGRHVILLANGRLVNLGCATGHSSFVMSCSFSNQVLAQIALFKSNDKSFREKHIEFQKTGPFEVGVHVLPKILDEAVAKFHLGNLGVRLTKLSKVQSEYLGIPEEGPFKADHYRY 449          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_PNECA (Adenosylhomocysteinase (Fragment) OS=Pneumocystis carinii GN=SAHH PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.645e-35
Identity = 87/165 (52.73%), Postives = 107/165 (64.85%), Query Frame = -3
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRIT----IKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TG KDII   H + MKN+AI+CNIGHFD EIDV  L     +K+ +    IKPQ DR++     + II+LAEGRL+NLGCATGH S VMS SFTNQV+AQ+ LW  +  G+Y   V+ LPK LDE+V           LT LT EQ+ Y+ +  DGPYK  HYRY
Sbjct:  284 TGCKDIICERHFEAMKNDAIICNIGHFDVEIDVAWL-----IKKCSSISNIKPQVDRYLLGNGRN-IILLAEGRLVNLGCATGHSSMVMSMSFTNQVLAQIALWTAQE-GQYPLGVHFLPKKLDEEV-ARLHLSKLGKLTSLTPEQSAYLDIPIDGPYKSEHYRY 440          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_CANAL (Adenosylhomocysteinase OS=Candida albicans GN=SAH1 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 8.508e-34
Identity = 83/174 (47.70%), Postives = 110/174 (63.22%), Query Frame = -3
Query:  296 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLEL-------WKEK-----STGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 781
            TTG +DII   H ++M  +AIVCNIGHFD EIDV  L+       + IKPQ DR++  +    +I+LA+GRL+NLGCATGH SFVMSCSF+NQV+AQ+ L       ++EK      TG ++  V++LPK LDE V           LT LT+ QA+Y+ +  +GPYK   YRY
Sbjct:  279 TTGCRDIITGKHFEQMPEDAIVCNIGHFDIEIDVAWLKAN-AESVVNIKPQVDRYLM-KNGRHVILLADGRLVNLGCATGHSSFVMSCSFSNQVLAQIALFNADNKEFREKFPEFAKTGPFDVGVHLLPKVLDETVARCHLDHLGAKLTTLTETQAEYLGIPEEGPYKADIYRY 450          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_PSEPG (Adenosylhomocysteinase OS=Pseudomonas putida (strain GB-1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.961e-30
Identity = 81/176 (46.02%), Postives = 108/176 (61.36%), Query Frame = -3
Query:  296 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGL-------ETYPGVKRITIKPQTDRWVF-PETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTG-KYEKK-----VYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 781
            TTGN ++   + +K +K  A+VCNIGHFDNEID   +       E  P V +I    +T    F P+ +  +I+LAEGRL+NLG ATGHPS +M  SF NQV+AQ+ L+++K      EKK     V VLPK LDE+V           +T+LTK+QADYI V+ +GP+KP  YRY
Sbjct:  297 TTGNVNVCDANMLKALKKRAVVCNIGHFDNEIDTAFMRKNWAWEEVKPQVHKIH---RTGAGSFDPQNDDYLILLAEGRLVNLGNATGHPSRIMDGSFANQVLAQIFLFEQKYADLSAEKKAERLTVEVLPKKLDEEVALEMVRGFGGVVTKLTKQQADYIGVTVEGPFKPHAYRY 469          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_PSEU5 (Adenosylhomocysteinase OS=Pseudomonas stutzeri (strain A1501) GN=ahcY PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.562e-30
Identity = 77/174 (44.25%), Postives = 103/174 (59.20%), Query Frame = -3
Query:  296 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQ------TDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEK------STGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 781
            TTGN ++     +K +K  A+VCNIGHFDNEID   +    G + +  KPQ      T + V P  +  +I+LAEGRL+NLG ATGHPS +M  SF NQV+AQ+ L+ EK      +       V VLPK LDE+V           +T+LT +QA+YI V+ +GP+KP  YRY
Sbjct:  297 TTGNVNVCDAGMLKALKKRAVVCNIGHFDNEIDTAFMRQNWGWEEV--KPQVHKIHRTGKTVDPTNDDYLILLAEGRLVNLGNATGHPSRIMDGSFANQVLAQIHLYNEKFADLPVAEKTQNVTVMVLPKKLDEEVALEMVKGFGGVVTQLTAKQAEYIGVAVEGPFKPDSYRY 468          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH3_PONAB (Putative adenosylhomocysteinase 3 OS=Pongo abelii GN=AHCYL2 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.346e-30
Identity = 70/161 (43.48%), Postives = 105/161 (65.22%), Query Frame = -3
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGNK+++  +H+ +MKN+ IVCNIGH + EIDV  L T P +    ++ Q D  ++P+    I++LAEGRL+NL C+T  P+FV+S + T Q +A +EL+     G+Y++ VY+LPK +DE V           LT LT EQA Y+ ++ +GP+KP +YRY
Sbjct:  352 TGNKNVVTREHLDRMKNSCIVCNIGHSNTEIDVASLRT-PELTWERVRSQVDHVIWPD-GKRIVLLAEGRLLNLSCSTV-PTFVLSITATTQALALIELYNAPE-GRYKQDVYLLPKKMDEYVASLHLPTFDAHLTELTDEQAKYLGLNKNGPFKPNYYRY 508          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_PSEP1 (Adenosylhomocysteinase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=ahcY PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.370e-30
Identity = 80/176 (45.45%), Postives = 108/176 (61.36%), Query Frame = -3
Query:  296 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGL-------ETYPGVKRITIKPQTDRWVF-PETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTG-KYEKK-----VYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 781
            TTGN ++   + +K +K  A+VCNIGHFDNEID   +       E  P V ++    +T    F P+ +  +I+LAEGRL+NLG ATGHPS +M  SF NQV+AQ+ L+++K      EKK     V VLPK LDE+V           +T+LTK+QADYI V+ +GP+KP  YRY
Sbjct:  297 TTGNVNVCDANMLKALKKRAVVCNIGHFDNEIDTAFMRKNWAWEEVKPQVHKVH---RTGAGSFDPQNDDYLILLAEGRLVNLGNATGHPSRIMDGSFANQVLAQIFLFEQKFADLPAEKKAERLTVEVLPKKLDEEVALEMVRGFGGVVTQLTKQQADYIGVTVEGPFKPHAYRY 469          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_PSEPW (Adenosylhomocysteinase OS=Pseudomonas putida (strain W619) GN=ahcY PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.707e-30
Identity = 79/175 (45.14%), Postives = 106/175 (60.57%), Query Frame = -3
Query:  296 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGL-------ETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTG-KYEKK-----VYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 781
            TTGN ++   + +K +K  A+VCNIGHFDNEID   +       E  P V +I      D    P+ +  +I+LAEGRL+NLG ATGHPS +M  SF NQV+AQ+ L+++K      EKK     V VLPK LDE+V           +T+LT++QADYI V+ +GP+KP  YRY
Sbjct:  297 TTGNVNVCDANMLKALKKRAVVCNIGHFDNEIDTAFMRKNWAWEEVKPQVHKIHRTGAGD--FDPQNDDYLILLAEGRLVNLGNATGHPSRIMDGSFANQVLAQIFLFEQKFADLSAEKKAERLTVEVLPKKLDEEVALEMVRGFGGVVTKLTQQQADYIGVTVEGPFKPHAYRY 469          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH3_MOUSE (Putative adenosylhomocysteinase 3 OS=Mus musculus GN=Ahcyl2 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.454e-30
Identity = 69/161 (42.86%), Postives = 105/161 (65.22%), Query Frame = -3
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGNK+++  +H+ +MKN+ IVCN+GH + EIDV  L T P +    ++ Q D  ++P+    I++LAEGRL+NL C+T  P+FV+S + T Q +A +EL+     G+Y++ VY+LPK +DE V           LT LT EQA Y+ ++ +GP+KP +YRY
Sbjct:  457 TGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRT-PELTWERVRSQVDHVIWPD-GKRIVLLAEGRLLNLSCSTV-PTFVLSITATTQALALIELYNAPE-GRYKQDVYLLPKKMDEYVASLHLPTFDAHLTELTDEQAKYLGLNKNGPFKPNYYRY 613          
The following BLAST results are available for this feature:
BLAST of CX043270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 243
Match NameE-valueIdentityDescription
SAHH_DICDI1.402e-3652.47Adenosylhomocysteinase OS=Dictyostelium discoideum... [more]
SAHH_YEAST2.025e-3548.28Adenosylhomocysteinase OS=Saccharomyces cerevisiae... [more]
SAHH_PNECA2.645e-3552.73Adenosylhomocysteinase (Fragment) OS=Pneumocystis ... [more]
SAHH_CANAL8.508e-3447.70Adenosylhomocysteinase OS=Candida albicans GN=SAH1... [more]
SAHH_PSEPG1.961e-3046.02Adenosylhomocysteinase OS=Pseudomonas putida (stra... [more]
SAHH_PSEU52.562e-3044.25Adenosylhomocysteinase OS=Pseudomonas stutzeri (st... [more]
SAHH3_PONAB3.346e-3043.48Putative adenosylhomocysteinase 3 OS=Pongo abelii ... [more]
SAHH_PSEP14.370e-3045.45Adenosylhomocysteinase OS=Pseudomonas putida (stra... [more]
SAHH_PSEPW5.707e-3045.14Adenosylhomocysteinase OS=Pseudomonas putida (stra... [more]
SAHH3_MOUSE7.454e-3042.86Putative adenosylhomocysteinase 3 OS=Mus musculus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_10A03_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A03-B6-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043270 ID=CX043270; Name=CX043270; organism=Citrus sinensis; type=EST; length=783bp
GTAAACAATAAGGATAACAAGATGCAGCAAAGCAAGCAAAACTTAAAACT
GCATCAAATACAACATAATCCAACACGGCCCCATCCAAAACCTTATTCAA
ATCCCAAATGGTCTTCAATCAACTGAAACAAATCCGTTTCTTTCCTCCAA
CTTTCCCACCACCCAAACACACACTACTACCAAATTTAAACCTAACATCC
TACTACAGATCATCATTGAAAACAATCAAGCCGGCCAAATATTTTGTTTC
TTTCCCTCAAAACATTCACTCTTCTTCTTCTTCTTCTTCCACTTAGTACC
TGTAGTGAAGAGGCTTGTAAGGACCATCGGCGGACACACTGATGTAGTCA
GCCTGCTCCTTGGTGAGCCTGGTGAGCTTAGCTCCAAGTTTGCCAAGGTG
AAGAGCAGCAACCTTCTCATCGAGGTGCTTGGGCAGAACATACACCTTCT
TCTCGTACTTGCCGGTGCTCTTCTCCTTCCAGAGCTCAAGCTGGGCAATC
ACCTGATTGGTGAAGGAACAGGACATCACAAAGCTGGGGTGCCCAGTGGC
ACATCCCAAGTTCATGAGACGTCCCTCAGCCAACACGATGATGCCTGAGT
TGGTCTCGGGGAAGACCCACCTATCAGTTTGGGGCTTGATGGTAATGCGC
TTAACACCCGGGTAGGTCTCAAGACCGAGCACATCAATTTCATTATCAAA
GTGACCAATGTTGCAAACAATTGCATTGTTCTTCATCTTCTTCATGTGGT
CAACCATGATGATGTCCTTGTTACCGGTGGTGG
back to top