CX043270

Overview
NameCX043270
Unique NameCX043270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043270_ssr270 microsatellite CX043270_ssr270:270..287. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1840 contig Csv1_Contig1840:1097..1879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_PSEAE (Adenosylhomocysteinase OS=Pseudomonas aeruginosa GN=ahcY PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.398e-28
Identity = 78/176 (44.32%), Postives = 107/176 (60.80%), Query Frame = -3
Query:  296 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGL-------ETYPGVKRITIKPQTDRWVFPETNSG-IIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEK-----STGKYEK-KVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 781
            TTGN ++   + +K +K  A+VCNIGHFDNEID   +       E  P V +I    +T +  F   N   +I+LAEGRL+NLG ATGHPS +M  SF NQV+AQ+ L+++K     +  K ++  V VLPK LDE+V           +T+LT +QA+YI VS +GP+KP  YRY
Sbjct:  297 TTGNVNVCDANMLKALKKRAVVCNIGHFDNEIDTAFMRKNWAWEEVKPQVHKIH---RTGKDGFDAHNDDYLILLAEGRLVNLGNATGHPSRIMDGSFANQVLAQIHLFEQKYADLPAAEKAKRLSVEVLPKKLDEEVALEMVKGFGGVVTQLTPKQAEYIGVSVEGPFKPDTYRY 469          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_PSEAB (Adenosylhomocysteinase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=ahcY PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.398e-28
Identity = 78/176 (44.32%), Postives = 107/176 (60.80%), Query Frame = -3
Query:  296 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGL-------ETYPGVKRITIKPQTDRWVFPETNSG-IIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEK-----STGKYEK-KVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 781
            TTGN ++   + +K +K  A+VCNIGHFDNEID   +       E  P V +I    +T +  F   N   +I+LAEGRL+NLG ATGHPS +M  SF NQV+AQ+ L+++K     +  K ++  V VLPK LDE+V           +T+LT +QA+YI VS +GP+KP  YRY
Sbjct:  297 TTGNVNVCDANMLKALKKRAVVCNIGHFDNEIDTAFMRKNWAWEEVKPQVHKIH---RTGKDGFDAYNDDYLILLAEGRLVNLGNATGHPSRIMDGSFANQVLAQIHLFEQKYADLPAAEKAKRLSVEVLPKKLDEEVALEMVKGFGGVVTQLTPKQAEYIGVSVEGPFKPDTYRY 469          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_PSEA8 (Adenosylhomocysteinase OS=Pseudomonas aeruginosa (strain LESB58) GN=ahcY PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.398e-28
Identity = 78/176 (44.32%), Postives = 107/176 (60.80%), Query Frame = -3
Query:  296 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGL-------ETYPGVKRITIKPQTDRWVFPETNSG-IIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEK-----STGKYEK-KVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 781
            TTGN ++   + +K +K  A+VCNIGHFDNEID   +       E  P V +I    +T +  F   N   +I+LAEGRL+NLG ATGHPS +M  SF NQV+AQ+ L+++K     +  K ++  V VLPK LDE+V           +T+LT +QA+YI VS +GP+KP  YRY
Sbjct:  297 TTGNVNVCDANMLKALKKRAVVCNIGHFDNEIDTAFMRKNWAWEEVKPQVHKIH---RTGKDGFDAHNDDYLILLAEGRLVNLGNATGHPSRIMDGSFANQVLAQIHLFEQKYADLPAAEKAKRLSVEVLPKKLDEEVALEMVKGFGGVVTQLTPKQAEYIGVSVEGPFKPDTYRY 469          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_PSEF5 (Adenosylhomocysteinase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=ahcY PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.090e-28
Identity = 79/176 (44.89%), Postives = 105/176 (59.66%), Query Frame = -3
Query:  296 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGL-------ETYPGVKRITIKPQTDRWVFPETNSG-IIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEK-----STGKYEK-KVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 781
            TTGN ++   + +K +K  A+VCNIGHFDNEID   +       E  P V +I    +T    F   N   +I+LAEGRL+NLG ATGHPS +M  SF NQV+AQ+ L+ +K        K E+  V VLPK LDE+V           +T+LTK+QA+YI V+ +GP+KP  YRY
Sbjct:  297 TTGNVNVCDANMLKALKKRAVVCNIGHFDNEIDTAFMRKNWAWEEVKPQVHKIH---RTGPGDFDAQNDDYLILLAEGRLVNLGNATGHPSRIMDGSFANQVLAQIFLFGQKYADLSPAQKAERLTVEVLPKKLDEEVALEMVRGFGGVVTQLTKQQAEYIGVTVEGPFKPDAYRY 469          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_STRFR (Adenosylhomocysteinase (Fragment) OS=Streptomyces fradiae GN=ahcY PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.342e-28
Identity = 66/122 (54.10%), Postives = 80/122 (65.57%), Query Frame = -3
Query:  296 PGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 661
            PG+ +  +KPQ   W F +    IIVL+EGRL+NLG ATGHPSFVMS SF +Q +AQ+EL+ +    +Y   VYVLPKHLDEKV           LT L  EQA+YI V  +GPYKP HYRY
Sbjct:    2 PGIVKDEVKPQVHTWTFADGKK-IIVLSEGRLLNLGNATGHPSFVMSNSFADQTLAQIELYTKPE--QYPTDVYVLPKHLDEKVARLHLDALGVKLTTLRPEQAEYIGVEVEGPYKPDHYRY 120          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_ACIAD (Adenosylhomocysteinase OS=Acinetobacter sp. (strain ADP1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.462e-27
Identity = 75/169 (44.38%), Postives = 98/169 (57.99%), Query Frame = -3
Query:  296 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPET-NSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEK------STGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 781
            TTGN  +     +  +K  A+VCNIGHFD EID   L  Y   K + +KPQ  +    E  N  +I+L+EGRL+NLG ATGHPS VM  SF NQV+ Q+ L++EK      S    + +V VLPK LDE+V           LT+LT  QADY+ V  +GP+K   Y+Y
Sbjct:  302 TTGNYHVCDSAMLDTLKAGAVVCNIGHFDTEIDTNYLRGY---KWVEVKPQVHQVYRSENENDYLILLSEGRLVNLGNATGHPSRVMDGSFANQVLGQIHLFQEKFADLPASEKAAQIRVEVLPKKLDEEVAAAMVLGFGGVLTQLTSVQADYLGVPVEGPFKSDAYKY 467          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_HAHCH (Adenosylhomocysteinase OS=Hahella chejuensis (strain KCTC 2396) GN=ahcY PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.007e-26
Identity = 71/169 (42.01%), Postives = 101/169 (59.76%), Query Frame = -3
Query:  296 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDR-WVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEK----STGKYEKKVY--VLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 781
            TTGN ++     ++ +K+ A+VCNIGHFDNEID   +      +   +KPQ    +   + N  +++L+EGRL+NLG ATGHPS +M  SF NQV+AQ+ L++ K       +  K +Y  VLPK LDE+V           +T+LT+ QA YI V  +GPYKP  Y+Y
Sbjct:  297 TTGNVNVCDKYMLQALKSGAVVCNIGHFDNEIDTRFMRD--NWEWEEVKPQVHVIYRNKDQNDHLLLLSEGRLVNLGNATGHPSRIMDGSFANQVLAQMYLFERKFADLPADEKPKNLYVRVLPKQLDEEVARYMVQGFGGVITKLTQPQAKYIGVEVEGPYKPTDYKY 463          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH2_DROME (Putative adenosylhomocysteinase 2 OS=Drosophila melanogaster GN=Ahcy89E PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.931e-26
Identity = 69/161 (42.86%), Postives = 101/161 (62.73%), Query Frame = -3
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGNK++I  DHM +MKN  I+CN+GH  +EIDV GL T P +    ++ Q D   +P+    II+LAEGRL+NL C+T   SFV+S + + Q +A +EL+   + G+Y+  VY+LPK +DE V           LT LT EQ+ ++ ++  GP+K  +YRY
Sbjct:  337 TGNKNVITRDHMNRMKNGCILCNMGHSCSEIDVNGLHT-PELTWERVRSQVDHIRWPDGRM-IILLAEGRLVNLSCST-ISSFVVSVASSTQALALIELF--SAPGRYKSDVYLLPKKMDEYVASLHLATFDAHLTELTDEQSKFMGLNKAGPFKANYYRY 492          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_SULSO (Adenosylhomocysteinase OS=Sulfolobus solfataricus GN=ahcY PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.568e-22
Identity = 63/146 (43.15%), Postives = 83/146 (56.85%), Query Frame = -3
Query:  341 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYI 778
            TGN   I V+HM  MK+ AI+ N GHF+ E+DV GL+    VK   I+P  D +  P     + +LA+GRL+NL  A GHPS VM  SF NQ +A   L K +  GK EKKVY +P  LD +V           +  LT+EQ +Y+
Sbjct:  269 TGNTKAIRVEHMLNMKDGAILSNAGHFNVEVDVKGLKE-TAVKVRNIRPYVDEYTLP-NGKRVYLLADGRLVNLAAAEGHPSEVMDMSFANQALAVEYLVKNR--GKLEKKVYNMPMELDYEVARIKLKSMGIQIDELTEEQKEYL 410          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_GLOVI (Adenosylhomocysteinase OS=Gloeobacter violaceus GN=ahcY PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.839e-21
Identity = 60/152 (39.47%), Postives = 84/152 (55.26%), Query Frame = -3
Query:  323 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADG 778
            TGNK +I  +H   MK+ AIVCN GHFD EID++ L      +R+ ++P T+ +   E    +IVL EGRL+NL  A GHP+ VM  SF NQ +A   L K +  GK    +Y +P+ LD ++           +  LT +Q  YIS   +G
Sbjct:  279 TGNKHVIRREHFAMMKDGAIVCNSGHFDIEIDLVALGELSSERRM-VRPFTEEYTL-EGGKSVIVLGEGRLINLAAAEGHPASVMDMSFANQALAVEYLIKNQ--GKLSPGIYNIPEELDRQIAALKLAAMGIAIDTLTPDQLHYISSWDEG 426          
The following BLAST results are available for this feature:
BLAST of CX043270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 243
Match NameE-valueIdentityDescription
SAHH_PSEAE2.398e-2844.32Adenosylhomocysteinase OS=Pseudomonas aeruginosa G... [more]
SAHH_PSEAB2.398e-2844.32Adenosylhomocysteinase OS=Pseudomonas aeruginosa (... [more]
SAHH_PSEA82.398e-2844.32Adenosylhomocysteinase OS=Pseudomonas aeruginosa (... [more]
SAHH_PSEF54.090e-2844.89Adenosylhomocysteinase OS=Pseudomonas fluorescens ... [more]
SAHH_STRFR5.342e-2854.10Adenosylhomocysteinase (Fragment) OS=Streptomyces ... [more]
SAHH_ACIAD3.462e-2744.38Adenosylhomocysteinase OS=Acinetobacter sp. (strai... [more]
SAHH_HAHCH1.007e-2642.01Adenosylhomocysteinase OS=Hahella chejuensis (stra... [more]
SAHH2_DROME2.931e-2642.86Putative adenosylhomocysteinase 2 OS=Drosophila me... [more]
SAHH_SULSO2.568e-2243.15Adenosylhomocysteinase OS=Sulfolobus solfataricus ... [more]
SAHH_GLOVI2.839e-2139.47Adenosylhomocysteinase OS=Gloeobacter violaceus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A03_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A03-B6-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043270 ID=CX043270; Name=CX043270; organism=Citrus sinensis; type=EST; length=783bp
GTAAACAATAAGGATAACAAGATGCAGCAAAGCAAGCAAAACTTAAAACT
GCATCAAATACAACATAATCCAACACGGCCCCATCCAAAACCTTATTCAA
ATCCCAAATGGTCTTCAATCAACTGAAACAAATCCGTTTCTTTCCTCCAA
CTTTCCCACCACCCAAACACACACTACTACCAAATTTAAACCTAACATCC
TACTACAGATCATCATTGAAAACAATCAAGCCGGCCAAATATTTTGTTTC
TTTCCCTCAAAACATTCACTCTTCTTCTTCTTCTTCTTCCACTTAGTACC
TGTAGTGAAGAGGCTTGTAAGGACCATCGGCGGACACACTGATGTAGTCA
GCCTGCTCCTTGGTGAGCCTGGTGAGCTTAGCTCCAAGTTTGCCAAGGTG
AAGAGCAGCAACCTTCTCATCGAGGTGCTTGGGCAGAACATACACCTTCT
TCTCGTACTTGCCGGTGCTCTTCTCCTTCCAGAGCTCAAGCTGGGCAATC
ACCTGATTGGTGAAGGAACAGGACATCACAAAGCTGGGGTGCCCAGTGGC
ACATCCCAAGTTCATGAGACGTCCCTCAGCCAACACGATGATGCCTGAGT
TGGTCTCGGGGAAGACCCACCTATCAGTTTGGGGCTTGATGGTAATGCGC
TTAACACCCGGGTAGGTCTCAAGACCGAGCACATCAATTTCATTATCAAA
GTGACCAATGTTGCAAACAATTGCATTGTTCTTCATCTTCTTCATGTGGT
CAACCATGATGATGTCCTTGTTACCGGTGGTGG
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