CX043270

Overview
NameCX043270
Unique NameCX043270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043270_ssr270 microsatellite CX043270_ssr270:270..287. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1840 contig Csv1_Contig1840:1097..1879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_AERPE (Adenosylhomocysteinase OS=Aeropyrum pernix GN=ahcY PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.487e-17
Identity = 56/146 (38.36%), Postives = 84/146 (57.53%), Query Frame = -3
Query:  341 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYI 778
            TGN ++I   HM+KMK+ AI+ N GHF+ EI+V  LE     KR  ++   D +  P+    + ++ EGRL+NL  A GHPS VM  SF+NQ +A L++  E+  G+ EK+V+ + +  DE V           +  LT+EQ  Y+
Sbjct:  271 TGNINVIDARHMEKMKDGAILANAGHFNVEINVAALEEMSVSKR-RVRRYLDEYRLPD-GRRLYLIGEGRLVNLVAAEGHPSEVMDMSFSNQALAVLKIAGER--GRLEKRVHRVERIQDEMVARLKLETMGVRIDSLTEEQKLYL 412          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_METMP (Adenosylhomocysteinase OS=Methanococcus maripaludis GN=ahcY PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.248e-17
Identity = 57/156 (36.54%), Postives = 82/156 (52.56%), Query Frame = -3
Query:  323 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSG---IIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADG 781
            TTG KDI+ ++H   MK+ A++ N GHFDNEI+   L      K ++   +  R+   E + G   I +L EGRL+NL CA GHP  VM  SF NQ ++   + + K  GK E +VY +P   D K+           +  L+ EQ  Y+S   +G
Sbjct:  267 TTGCKDILRMEHFLLMKDGAVLSNAGHFDNEINKNDL------KELSKSVKEARFNIEEYDLGNKKIYLLGEGRLVNLACADGHPCEVMDMSFANQALSAKFIKENK--GKLENEVYEIPYEQDFKIALLKLHSMGADIDELSPEQRKYLSDWKEG 414          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_METKA (Adenosylhomocysteinase OS=Methanopyrus kandleri GN=ahcY PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.186e-15
Identity = 53/152 (34.87%), Postives = 78/152 (51.32%), Query Frame = -3
Query:  323 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADG 778
            TGN+D+I  +H++KMK+  I+ N GHFD EID   LE +   K          +  P+    + ++AEGRL+NL    GHP  +M  SF  Q ++   L KE    + E  VY +PK +D++V           L  LT EQ +Y+    +G
Sbjct:  275 TGNRDVIRGEHIEKMKDGVILANAGHFDVEIDKEYLEEHCEEKIDRRGGLVTEYRMPD-GKRVYLIAEGRLVNLAAGEGHPIEIMDISFALQALSVEVLAKEGK--EMEPGVYKVPKDVDKRVAELKLESMGIELEELTPEQREYMKSWEEG 423          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_PYRKO (Adenosylhomocysteinase OS=Pyrococcus kodakaraensis GN=ahcY PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.773e-15
Identity = 52/146 (35.62%), Postives = 78/146 (53.42%), Query Frame = -3
Query:  341 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYI 778
            TG+ + I  +H + MK+ AI+ N GHFD EI    LE    V+    +P    +   +    + +LAEGRL+NL  A GHP+ +M  SF  Q  A+   + +++ G+ E KVYVLP+ +DE V           +  LT+EQ  Y+
Sbjct:  273 TGDINCIRKEHFELMKDGAILANAGHFDVEISKPDLEAL-AVEISEPRPNITEYKMADGRR-LYLLAEGRLVNLAAADGHPAEIMDMSFALQ--AKAAEYIKENRGRLEPKVYVLPREIDEMVARIKLASMGIKIEELTEEQKKYL 414          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_THEMA (Adenosylhomocysteinase OS=Thermotoga maritima GN=ahcY PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.971e-14
Identity = 48/146 (32.88%), Postives = 75/146 (51.37%), Query Frame = -3
Query:  341 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYI 778
            +GN D++  + +  +K+ A++ N GHF+ EI V  LE    V++   +P    +   E    + +LAEGRL+NL    GHP  +M  SF  Q+ A L L +     K   KVY+LP  +DE+V           +  LT++Q  Y+
Sbjct:  259 SGNTDVLSKEDILSLKDGAVLANAGHFNVEIPVRVLEEI-AVEKFEARPNVTGYTL-ENGKTVFLLAEGRLVNLAAGDGHPVEIMDLSFALQIFAVLYLLENHR--KMSPKVYMLPDEIDERVARMKLDSLGVKIDELTEKQRRYL 400          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_METMA (Adenosylhomocysteinase OS=Methanosarcina mazei GN=ahcY PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.780e-14
Identity = 51/147 (34.69%), Postives = 74/147 (50.34%), Query Frame = -3
Query:  338 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYIS 778
            TGN+DI+  D+ K MK+ AI+ N GHF+ EID+  L++     R T++       +   N  I V+AEGRL+NL    GHP+ VM  SF NQ +    +    +  K    V+ +P+ LD  V              LT +Q  Y+S
Sbjct:  266 TGNRDILTADNFKVMKDGAILANSGHFNVEIDMEALDSLAKSTR-TVRHNIKE--YDIGNRRINVIAEGRLVNLAAGDGHPAEVMDMSFANQALCVRYI----AENKLSSGVHGVPRELDTYVAKLKLESMGIATDELTSKQECYMS 405          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_PYRHO (Adenosylhomocysteinase OS=Pyrococcus horikoshii GN=ahcY PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.854e-13
Identity = 50/146 (34.25%), Postives = 76/146 (52.05%), Query Frame = -3
Query:  341 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYI 778
            TG+   I  +H + MK+ AI+ N GHFD EI    LE    V+    +P    +   +    + +LA+GRL+NL  A GHP+ +M  SF  Q  A+   + + + GK E +VY+LP+ +DE V           +  LT+EQ  Y+
Sbjct:  273 TGDIKCIRREHFELMKDGAIMANAGHFDVEIWKPDLEEL-AVEISNPRPNVTEYKLKDGRR-LYLLADGRLVNLVAADGHPAEIMDMSFALQ--AKAAEYIKDNHGKLEPRVYILPREIDEMVARIKLASMGIEIEELTEEQKKYL 414          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_THEVO (Adenosylhomocysteinase OS=Thermoplasma volcanium GN=ahcY PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.339e-13
Identity = 49/152 (32.24%), Postives = 74/152 (48.68%), Query Frame = -3
Query:  323 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADG 778
            TG KD++  +     K N ++ N GHFDNE+ V  +E +   KR  ++    R+   E  + + V+A+GRL+NL    GHP  +M  SF  Q +    L K       EKKVY +P  +D  V           L  LT++Q  Y++   +G
Sbjct:  262 TGMKDVVKYEDALVAKKNIVLANAGHFDNEVAVKEIEKHSLEKR-EVREFVKRYRL-ENGNTVDVIADGRLVNLAAGQGHPVEIMDLSFALQALTAEYLVKNHQ--NLEKKVYPVPPEIDRYVAEIRLKQFGGELDTLTEDQIKYLNSWDEG 409          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_PYRAB (Adenosylhomocysteinase OS=Pyrococcus abyssi GN=ahcY PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.081e-12
Identity = 50/146 (34.25%), Postives = 76/146 (52.05%), Query Frame = -3
Query:  341 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYI 778
            TGN   I  +H + MK+ AI+ N GHFD EI    LE    V+    +P    +   +    + +LA+GRL+NL  A GHP+ +M  SF  Q  A+   + +++  + E +VYVLP+ +DE V           +  LT+EQ  Y+
Sbjct:  274 TGNIKCIRREHFELMKDGAIMANAGHFDVEIWKPDLEEL-AVEISNPRPNVTEYKLKD-GRRLYLLADGRLVNLVAADGHPAEIMDMSFALQ--AKAAEYIKENHERLEPRVYVLPREIDEMVARIKLQSMGINIEELTEEQKKYL 415          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_PYRFU (Adenosylhomocysteinase OS=Pyrococcus furiosus GN=ahcY PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.412e-12
Identity = 50/146 (34.25%), Postives = 75/146 (51.37%), Query Frame = -3
Query:  341 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYI 778
            TGN   I  +H + MK+ AI+ N GHFD EI    LE    V+    +P    +   +    + +LA+GRL+NL  A GHP+ +M  SF  Q  A+   + + +  + E KVY+LP+ +DE V           +  LT+EQ  Y+
Sbjct:  273 TGNIKCIRREHFELMKDGAIMANAGHFDVEIWKPDLEKL-AVEINNPRPNVTEYKLKD-GRRLYLLADGRLVNLVAADGHPAEIMDMSFALQ--AKAAEYIKDNHERLEPKVYILPREIDEMVARIKLESMGIKIEELTEEQKKYL 414          
The following BLAST results are available for this feature:
BLAST of CX043270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 243
Match NameE-valueIdentityDescription
SAHH_AERPE2.487e-1738.36Adenosylhomocysteinase OS=Aeropyrum pernix GN=ahcY... [more]
SAHH_METMP3.248e-1736.54Adenosylhomocysteinase OS=Methanococcus maripaludi... [more]
SAHH_METKA5.186e-1534.87Adenosylhomocysteinase OS=Methanopyrus kandleri GN... [more]
SAHH_PYRKO6.773e-1535.62Adenosylhomocysteinase OS=Pyrococcus kodakaraensis... [more]
SAHH_THEMA1.971e-1432.88Adenosylhomocysteinase OS=Thermotoga maritima GN=a... [more]
SAHH_METMA9.780e-1434.69Adenosylhomocysteinase OS=Methanosarcina mazei GN=... [more]
SAHH_PYRHO4.854e-1334.25Adenosylhomocysteinase OS=Pyrococcus horikoshii GN... [more]
SAHH_THEVO6.339e-1332.24Adenosylhomocysteinase OS=Thermoplasma volcanium G... [more]
SAHH_PYRAB1.081e-1234.25Adenosylhomocysteinase OS=Pyrococcus abyssi GN=ahc... [more]
SAHH_PYRFU1.412e-1234.25Adenosylhomocysteinase OS=Pyrococcus furiosus GN=a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A03_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A03-B6-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043270 ID=CX043270; Name=CX043270; organism=Citrus sinensis; type=EST; length=783bp
GTAAACAATAAGGATAACAAGATGCAGCAAAGCAAGCAAAACTTAAAACT
GCATCAAATACAACATAATCCAACACGGCCCCATCCAAAACCTTATTCAA
ATCCCAAATGGTCTTCAATCAACTGAAACAAATCCGTTTCTTTCCTCCAA
CTTTCCCACCACCCAAACACACACTACTACCAAATTTAAACCTAACATCC
TACTACAGATCATCATTGAAAACAATCAAGCCGGCCAAATATTTTGTTTC
TTTCCCTCAAAACATTCACTCTTCTTCTTCTTCTTCTTCCACTTAGTACC
TGTAGTGAAGAGGCTTGTAAGGACCATCGGCGGACACACTGATGTAGTCA
GCCTGCTCCTTGGTGAGCCTGGTGAGCTTAGCTCCAAGTTTGCCAAGGTG
AAGAGCAGCAACCTTCTCATCGAGGTGCTTGGGCAGAACATACACCTTCT
TCTCGTACTTGCCGGTGCTCTTCTCCTTCCAGAGCTCAAGCTGGGCAATC
ACCTGATTGGTGAAGGAACAGGACATCACAAAGCTGGGGTGCCCAGTGGC
ACATCCCAAGTTCATGAGACGTCCCTCAGCCAACACGATGATGCCTGAGT
TGGTCTCGGGGAAGACCCACCTATCAGTTTGGGGCTTGATGGTAATGCGC
TTAACACCCGGGTAGGTCTCAAGACCGAGCACATCAATTTCATTATCAAA
GTGACCAATGTTGCAAACAATTGCATTGTTCTTCATCTTCTTCATGTGGT
CAACCATGATGATGTCCTTGTTACCGGTGGTGG
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