CX043270

Overview
NameCX043270
Unique NameCX043270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043270_ssr270 microsatellite CX043270_ssr270:270..287. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1840 contig Csv1_Contig1840:1097..1879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_XYLF2 (Adenosylhomocysteinase OS=Xylella fastidiosa (strain M23) GN=ahcY PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.764e-47
Identity = 92/162 (56.79%), Postives = 114/162 (70.37%), Query Frame = -3
Query:  296 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 781
            TTGNKD+I ++HM  MK+  IVCNIGHFDNEI V  L    GV++I IKPQ D+++ P  N+ + +LAEGRL+NLGCATGHPSFVMS SF NQ +AQ++LW+ K    YEK VY LPK LDE+V           LT LT  QA Y+ +S +GP+KP HYRY
Sbjct:  322 TTGNKDVIRIEHMTAMKDQVIVCNIGHFDNEIQVDALNALTGVQKINIKPQVDKFILPNGNT-LFLLAEGRLVNLGCATGHPSFVMSNSFANQTLAQIDLWQNKDV--YEKNVYRLPKKLDEEVARLHLEKIGVKLTTLTANQAAYLGISVEGPFKPEHYRY 480          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_RHOBA (Adenosylhomocysteinase OS=Rhodopirellula baltica GN=ahcY PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.764e-47
Identity = 96/169 (56.80%), Postives = 119/169 (70.41%), Query Frame = -3
Query:  296 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRIT---IKPQ----TDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 781
            TTGNKDII+ +HMK+M N+AI+CNIGHFD EID+   E      + T   IKP      DR+ F +T   II+LA+GRL+NLGCATGHPSFVMS SFTNQV+AQ+EL++ +   KY  +VY+LPK LDE+V           LT+LT+EQADYI V  +GPYKP HYRY
Sbjct:  280 TTGNKDIILGEHMKQMPNDAILCNIGHFDTEIDIAWAEQQVADGKATVSEIKPSDIGAVDRFTFNDTGRSIIILAKGRLVNLGCATGHPSFVMSSSFTNQVLAQMELYQNRDNDKYGVQVYLLPKELDEEVARLHLEAIGVKLTKLTQEQADYIGVPVEGPYKPNHYRY 448          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_HALHL (Adenosylhomocysteinase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.764e-47
Identity = 102/161 (63.35%), Postives = 116/161 (72.05%), Query Frame = -3
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGN ++I  DHMK MK+ AIVCNIGHFDNEIDV  L+ Y   K   IKPQ D   FP+    I +LAEGRL+NLGCATGHPSFVMS SFTNQV+AQ+EL+   + GKYEK VYVLPKHLDEKV           LTRL++EQA YI VS DGP+KP  YRY
Sbjct:  276 TGNYNVITHDHMKAMKDEAIVCNIGHFDNEIDVASLKQY---KWDEIKPQVDHVEFPDGKK-ITLLAEGRLVNLGCATGHPSFVMSNSFTNQVMAQMELYN--NPGKYEKDVYVLPKHLDEKVAALHLGRVGANLTRLSEEQAGYIGVSVDGPFKPEWYRY 430          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_RALME (Adenosylhomocysteinase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=ahcY PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.952e-46
Identity = 96/161 (59.63%), Postives = 112/161 (69.57%), Query Frame = -3
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGN  +I  DHM KMK+ AIVCNIGHFDNEID+  +E Y   +   IKPQ D   FP+    II+LA+GRL+NLGCATGHPS+VMS SF NQ IAQ+ELW E+ +GKY   VYVLPKHLDEKV           LT LT++QA YI V  +GPYK  HYRY
Sbjct:  316 TGNYHVITHDHMAKMKDQAIVCNIGHFDNEIDIASVEKYEWDE---IKPQVDHVKFPDGKK-IIILAKGRLVNLGCATGHPSYVMSSSFANQTIAQIELWAERDSGKYPVGVYVLPKHLDEKVARLQLRKLNAQLTELTEQQAAYIGVKKEGPYKADHYRY 472          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_POLNS (Adenosylhomocysteinase OS=Polynucleobacter necessarius (strain STIR1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.952e-46
Identity = 98/165 (59.39%), Postives = 110/165 (66.67%), Query Frame = -3
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNS----GIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGN  +I  DHM KMK+ AIVCNIGHFDNEIDV G+E Y   K   IKPQ D  +FP  N      II+LA+GRL+NLGC TGHPS+VMS SF NQVIAQ+ELW    T KY   VY LPKHLDEKV           LT LT +QA YI V+ +GPYK  HYRY
Sbjct:  320 TGNYHVITHDHMAKMKDQAIVCNIGHFDNEIDVAGIEKY---KWEEIKPQVDHVIFPAANGMPEKRIIILAKGRLVNLGCGTGHPSYVMSSSFANQVIAQIELWNAVGTNKYPVGVYTLPKHLDEKVARLQLKKLNAQLTELTDQQAAYIGVTKEGPYKADHYRY 481          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_POLSQ (Adenosylhomocysteinase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.330e-46
Identity = 98/165 (59.39%), Postives = 110/165 (66.67%), Query Frame = -3
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSG----IIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGN  +I  DHM KMKN AIVCNIGHFDNEIDV G+E Y   K   IKPQ D  +FP  N      II+LA+GRL+NLGC TGHPS+VMS SF NQVIAQ+ELW    T KY   VY LPKHLDEKV           LT L+ +QA YI V+ +GPYK  HYRY
Sbjct:  320 TGNYHVITHDHMAKMKNQAIVCNIGHFDNEIDVAGIEKY---KWEEIKPQVDHVIFPAANGKPEKRIIILAKGRLVNLGCGTGHPSYVMSSSFANQVIAQIELWNAVGTDKYPIGVYTLPKHLDEKVARLQLKTLNAELTVLSDQQASYIGVTKEGPYKADHYRY 481          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_PELLD (Adenosylhomocysteinase OS=Pelodictyon luteolum (strain DSM 273) GN=ahcY PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.330e-46
Identity = 95/162 (58.64%), Postives = 113/162 (69.75%), Query Frame = -3
Query:  296 TTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 781
            TTGNKD++ ++HMK+M + AIVCNIGHFDNEI V  L  Y G  ++ IKPQ D++ F E    I +LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+ELWK      Y+  VY LPK LDE+V           LT L+KEQA+YI V   GPYKP HYRY
Sbjct:  315 TTGNKDVVTLEHMKQMPDEAIVCNIGHFDNEIQVEPLNEYKGATKLNIKPQVDKYTF-EDGHCIYLLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELWK----NDYKVDVYRLPKALDEEVARLHLEQIGVKLTTLSKEQAEYIGVPVTGPYKPEHYRY 471          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_RALEH (Adenosylhomocysteinase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=ahcY PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.349e-46
Identity = 94/161 (58.39%), Postives = 112/161 (69.57%), Query Frame = -3
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGN  +I  DHM KMK+ AIVCNIGHFDNEID+  +E Y   +   IKPQ D   FP+    +I+LA+GRL+NLGCATGHPS+VMS SF NQ IAQ+ELW+E+ +GKY   VY LPKHLDEKV           LT LT++QA YI V  +GPYK  HYRY
Sbjct:  316 TGNYHVITHDHMAKMKDQAIVCNIGHFDNEIDIASIEKYEWDE---IKPQVDHVKFPDGKK-LIILAKGRLVNLGCATGHPSYVMSSSFANQTIAQIELWQERDSGKYPVGVYTLPKHLDEKVARLQLRKLNAQLTELTEQQAAYIGVKKEGPYKADHYRY 472          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_CAUCR (Adenosylhomocysteinase OS=Caulobacter crescentus GN=ahcY PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.349e-46
Identity = 98/161 (60.87%), Postives = 113/161 (70.19%), Query Frame = -3
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGNKD+I VD M+KMKNNAIVCNIGHFD+EI + GL  +   K   IKPQ     FP+    +IVL+EGRL+NLG ATGHPSFVMS SFTNQ +AQ+ELW  K+  KYE +VY LPKHLDEKV           LT L K+QADYI V   GP+KP HYRY
Sbjct:  309 TGNKDVITVDDMRKMKNNAIVCNIGHFDSEIQIAGLRNF---KWDEIKPQVHHVEFPDGKK-LIVLSEGRLVNLGNATGHPSFVMSASFTNQTLAQIELWTNKA--KYENQVYTLPKHLDEKVAFLHLEKLGAKLTTLRKDQADYIGVPEAGPFKPDHYRY 463          
BLAST of CX043270 vs. ExPASy Swiss-Prot
Match: SAHH_RALEJ (Adenosylhomocysteinase OS=Ralstonia eutropha (strain JMP134) GN=ahcY PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.681e-46
Identity = 94/161 (58.39%), Postives = 112/161 (69.57%), Query Frame = -3
Query:  296 TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 778
            TGN  +I  DHM +MK+ AIVCNIGHFDNEID+  +E Y   +   IKPQ D   FP+    II+LA+GRL+NLGCATGHPS+VMS SF NQ IAQ+ELW+E+ +GKY   VY LPKHLDEKV           LT LT++QA YI V  +GPYK  HYRY
Sbjct:  316 TGNYHVITHDHMARMKDQAIVCNIGHFDNEIDIASIEKYEWDE---IKPQVDHVKFPDGKK-IIILAKGRLVNLGCATGHPSYVMSSSFANQTIAQIELWQERDSGKYPVGVYTLPKHLDEKVARLQLRKLNAQLTELTEQQAAYIGVKKEGPYKADHYRY 472          
The following BLAST results are available for this feature:
BLAST of CX043270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 243
Match NameE-valueIdentityDescription
SAHH_XYLF28.764e-4756.79Adenosylhomocysteinase OS=Xylella fastidiosa (stra... [more]
SAHH_RHOBA8.764e-4756.80Adenosylhomocysteinase OS=Rhodopirellula baltica G... [more]
SAHH_HALHL8.764e-4763.35Adenosylhomocysteinase OS=Halorhodospira halophila... [more]
SAHH_RALME1.952e-4659.63Adenosylhomocysteinase OS=Ralstonia metallidurans ... [more]
SAHH_POLNS1.952e-4659.39Adenosylhomocysteinase OS=Polynucleobacter necessa... [more]
SAHH_POLSQ3.330e-4659.39Adenosylhomocysteinase OS=Polynucleobacter sp. (st... [more]
SAHH_PELLD3.330e-4658.64Adenosylhomocysteinase OS=Pelodictyon luteolum (st... [more]
SAHH_RALEH4.349e-4658.39Adenosylhomocysteinase OS=Ralstonia eutropha (stra... [more]
SAHH_CAUCR4.349e-4660.87Adenosylhomocysteinase OS=Caulobacter crescentus G... [more]
SAHH_RALEJ5.681e-4658.39Adenosylhomocysteinase OS=Ralstonia eutropha (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A03_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A03-B6-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043270 ID=CX043270; Name=CX043270; organism=Citrus sinensis; type=EST; length=783bp
GTAAACAATAAGGATAACAAGATGCAGCAAAGCAAGCAAAACTTAAAACT
GCATCAAATACAACATAATCCAACACGGCCCCATCCAAAACCTTATTCAA
ATCCCAAATGGTCTTCAATCAACTGAAACAAATCCGTTTCTTTCCTCCAA
CTTTCCCACCACCCAAACACACACTACTACCAAATTTAAACCTAACATCC
TACTACAGATCATCATTGAAAACAATCAAGCCGGCCAAATATTTTGTTTC
TTTCCCTCAAAACATTCACTCTTCTTCTTCTTCTTCTTCCACTTAGTACC
TGTAGTGAAGAGGCTTGTAAGGACCATCGGCGGACACACTGATGTAGTCA
GCCTGCTCCTTGGTGAGCCTGGTGAGCTTAGCTCCAAGTTTGCCAAGGTG
AAGAGCAGCAACCTTCTCATCGAGGTGCTTGGGCAGAACATACACCTTCT
TCTCGTACTTGCCGGTGCTCTTCTCCTTCCAGAGCTCAAGCTGGGCAATC
ACCTGATTGGTGAAGGAACAGGACATCACAAAGCTGGGGTGCCCAGTGGC
ACATCCCAAGTTCATGAGACGTCCCTCAGCCAACACGATGATGCCTGAGT
TGGTCTCGGGGAAGACCCACCTATCAGTTTGGGGCTTGATGGTAATGCGC
TTAACACCCGGGTAGGTCTCAAGACCGAGCACATCAATTTCATTATCAAA
GTGACCAATGTTGCAAACAATTGCATTGTTCTTCATCTTCTTCATGTGGT
CAACCATGATGATGTCCTTGTTACCGGTGGTGG
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