EY665401

Overview
NameEY665401
Unique NameEY665401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length984
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665401 vs. ExPASy Swiss-Prot
Match: PUB7_ARATH (U-box domain-containing protein 7 OS=Arabidopsis thaliana GN=PUB7 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.149e-15
Identity = 41/99 (41.41%), Postives = 56/99 (56.57%), Query Frame = 3
Query:   48 PYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASS 344
            P   RCPISL+LMCDPV + +GQTY+R  IE W + G+ TCP T+  L   +L PN+ ++ LI  WC  N   G Q    P +  +    R  L+ + S
Sbjct:  273 PEELRCPISLQLMCDPVIIASGQTYERVCIEKWFSDGHNTCPKTQQQLPHISLTPNNCVKGLIASWCEQN---GTQIPSGPPESQDLDYWRLALSDSES 368          
BLAST of EY665401 vs. ExPASy Swiss-Prot
Match: PUB4_ARATH (U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.960e-15
Identity = 44/107 (41.12%), Postives = 62/107 (57.94%), Query Frame = 3
Query:   36 SVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNT 356
            SV I   F CP+SLE+M DPV V +GQTY++  I+ W+  G   CP TR  LT  TLIPN+T++ LI +WC  N      ++P P +    + +  LL+   S  +T
Sbjct:  227 SVAILADFFCPLSLEVMTDPVIVSSGQTYEKAFIKRWIDLGLKVCPKTRQTLTHTTLIPNYTVKALIANWCETND----VKLPDPNKSTSLNELSPLLSCTDSIPST 329          
BLAST of EY665401 vs. ExPASy Swiss-Prot
Match: PUB9_ARATH (U-box domain-containing protein 9 OS=Arabidopsis thaliana GN=PUB9 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.702e-15
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 3
Query:   15 SLEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVAN 257
            SLE L+ +V  P  FRCP+S ELM DPV + +GQTYD+  I+ W+++GN TCP T+  L    L PN  +R +I  WC  N
Sbjct:   65 SLEMLE-TVSCPEEFRCPLSNELMRDPVVLASGQTYDKLFIQKWLSSGNRTCPKTQQVLPHTALTPNLLIREMISKWCKKN 144          
BLAST of EY665401 vs. ExPASy Swiss-Prot
Match: PUB45_ARATH (U-box domain-containing protein 45 OS=Arabidopsis thaliana GN=PUB45 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.447e-15
Identity = 41/99 (41.41%), Postives = 56/99 (56.57%), Query Frame = 3
Query:   48 PYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASS 344
            P   RCPISL+LM DPV + +GQTY+R  IE W + G+ TCP T   L+   L PN+ ++ LI  WC  N   GVQ    P +  + +  R  L+ + S
Sbjct:  280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWFSDGHNTCPKTHQQLSHLCLTPNYCVKALISSWCEQN---GVQVPDGPPESLDLNYWRLALSVSES 375          
BLAST of EY665401 vs. ExPASy Swiss-Prot
Match: PUB30_ARATH (U-box domain-containing protein 30 OS=Arabidopsis thaliana GN=PUB30 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.726e-15
Identity = 41/76 (53.95%), Postives = 48/76 (63.16%), Query Frame = 3
Query:   18 LEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDW 245
            ++ LDL   IP  F CPISLE M DPVT+CTGQTY+R +I  W   G+ TCP T   L D T+ PN TL  LI  W
Sbjct:   56 IKELDLQ-DIPSVFICPISLEPMQDPVTLCTGQTYERLNIHKWFNLGHLTCPTTMQELWDDTVTPNKTLHHLIYTW 130          
BLAST of EY665401 vs. ExPASy Swiss-Prot
Match: PUB29_ARATH (U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.659e-14
Identity = 44/110 (40.00%), Postives = 60/110 (54.55%), Query Frame = 3
Query:   39 VQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDW--CVANRSFG---VQRIPTPKQPAEPSLVRTLLNQASSESN 353
            + +P  F+CPISL++M  PV++CTG TYDR SI+ W+  GN TCP T   L     +PN TL+RLI  W   +  R  G   V   P+ ++      V  LL +  S  N
Sbjct:   10 ITVPSFFKCPISLDVMRSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQLLKTKDFVPNLTLQRLINIWSDSIGRRHNGDSPVLNPPSGREVPTKEEVNVLLERLMSLEN 119          
BLAST of EY665401 vs. ExPASy Swiss-Prot
Match: PUB2_ARATH (U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.304e-14
Identity = 44/113 (38.94%), Postives = 59/113 (52.21%), Query Frame = 3
Query:   39 VQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAE--------PSLVRTLLNQASSESN 353
            V++P  FRC +SLELM DPV V +GQT++R  I+ W+  G   CP TR  L+  TL PN  +R  +  WC  N  +       P  P E        P LV ++  +ASS  N
Sbjct:  238 VRVPSDFRCSLSLELMTDPVIVASGQTFERVFIQKWIDMGLMVCPKTRQALSHTTLTPNFIVRAFLASWCETNNVY-------PPDPLELIHSSEPFPLLVESV--RASSSEN 341          
BLAST of EY665401 vs. ExPASy Swiss-Prot
Match: PUB6_ARATH (U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 8.234e-14
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 3
Query:   48 PYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVAN 257
            P   RCPISL+LM DPV + +GQTY+R  IE W + G+ +CP T+  L   +L PN+ ++ LI  WC  N
Sbjct:  276 PEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNSCPKTQQQLPHLSLTPNYCVKGLIASWCEQN 345          
BLAST of EY665401 vs. ExPASy Swiss-Prot
Match: PUB31_ARATH (U-box domain-containing protein 31 OS=Arabidopsis thaliana GN=PUB31 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.234e-14
Identity = 37/68 (54.41%), Postives = 44/68 (64.71%), Query Frame = 3
Query:   42 QIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDW 245
            +IP  F CPISLE M DPVT+CTGQTY+R +I  W   G+ TCP T   L D  + PN TL +LI  W
Sbjct:   59 EIPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNIGHCTCPTTMQELWDDLVTPNKTLHQLIYTW 126          
BLAST of EY665401 vs. ExPASy Swiss-Prot
Match: PUB28_ARATH (U-box domain-containing protein 28 OS=Arabidopsis thaliana GN=PUB28 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.075e-13
Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = 3
Query:   45 IPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQA 338
            +P  F+CPISL++M  PV++ TG TYDR SI+ W+  GN TCP T   L +   +PN TL RLI  W     S  + R    + P   +  R  +N A
Sbjct:   11 VPCFFKCPISLDVMKSPVSLSTGVTYDRVSIQRWLDDGNNTCPATMQILQNKEFVPNLTLHRLIDHW-----SDSINRRADSESPESDTPTRDEINAA 103          
The following BLAST results are available for this feature:
BLAST of EY665401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
PUB7_ARATH1.149e-1541.41U-box domain-containing protein 7 OS=Arabidopsis t... [more]
PUB4_ARATH1.960e-1541.12U-box domain-containing protein 4 OS=Arabidopsis t... [more]
PUB9_ARATH5.702e-1548.15U-box domain-containing protein 9 OS=Arabidopsis t... [more]
PUB45_ARATH7.447e-1541.41U-box domain-containing protein 45 OS=Arabidopsis ... [more]
PUB30_ARATH9.726e-1553.95U-box domain-containing protein 30 OS=Arabidopsis ... [more]
PUB29_ARATH1.659e-1440.00U-box domain-containing protein 29 OS=Arabidopsis ... [more]
PUB2_ARATH6.304e-1438.94U-box domain-containing protein 2 OS=Arabidopsis t... [more]
PUB6_ARATH8.234e-1447.14U-box domain-containing protein 6 OS=Arabidopsis t... [more]
PUB31_ARATH8.234e-1454.41U-box domain-containing protein 31 OS=Arabidopsis ... [more]
PUB28_ARATH1.075e-1340.82U-box domain-containing protein 28 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-E03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665401 ID=EY665401; Name=EY665401; organism=Citrus sinensis; type=EST; length=984bp
AAAACATGCCCGGAAGCTTAGAGCCGTTGGATTTGAGCGTTCAGATACCT
TATCATTTCCGCTGTCCGATCTCCCTCGAGCTGATGTGTGACCCCGTCAC
GGTCTGCACCGGTCAGACCTACGACCGGCCCAGCATCGAGTCGTGGGTCG
CCACCGGCAACACCACCTGCCCTGTCACCCGCTCCCCACTCACCGACTTC
ACTCTCATCCCCAACCACACCCTCCGCCGGCTCATCCAAGACTGGTGCGT
CGCGAACCGTTCTTTCGGCGTCCAACGAATCCCGACCCCGAAGCAACCGG
CCGAACCGAGTCTGGTCAGAACTCTGCTGAACCAGGCCTCCTCCGAGTCG
AACACTTACGGCTCCCGCTTGTCGGCCCTCCGTCGACTCAGAGGTCTCGC
CCGTGACTCTGACAAGATTCGTTCTCTCATTTCATCTTCCAACGTTCGAA
CGATATTTAGCCAGGTCTTTTTTTCGAATATAAATGTAAAAACGGCGTCC
CCTCCAAAGTTGGCGCCGAAGTCATTAACTTTGCTGGGCCTGGTTTCCCC
CTCACTGAGACGGAATGCATGGGAAATAGCCAGGGACCCGGAAAAAAAAT
TTCAAGCCTTGTCAAGTTTTATTTTTCCACTCCCTCAATACAAAATCCCG
GGTTAAATCCCCCGGCTTCGAAAAAAAAATTTGTTCTTTACCCGGGCATG
GAAATCTCAAAAAGTTTCGGGGCCCTAATTACTTTTATTTTTGGAAAAAA
TTTTTTCAAAAGGGGGGGGTGTCCCAATTTTTAAAAAAAAATTTTTTTTT
TTTCATATTCCCCCGGGGGGGCCCCAAAAAGGGGGGAGGGAAAAAAAGGG
GCCCTTTTTTCCCCCCCTTTTGTGTCCCTGGGTGGAAAAAAAAAAAAAAC
AAGCCGAAAAAAAAAAGGAGAGGTGGGGGGGGGGCGGCCCCAGAGAAAGG
GGGCGGGGAGGAAGAAAAACACAAGTGTGTGGGG
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