CX043269

Overview
NameCX043269
Unique NameCX043269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1840 contig Csv1_Contig1840:707..1532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043269 vs. ExPASy Swiss-Prot
Match: SAHH_METAC (Adenosylhomocysteinase OS=Methanosarcina acetivorans GN=ahcY PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.812e-45
Identity = 102/224 (45.54%), Postives = 139/224 (62.05%), Query Frame = 3
Query:   15 RLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKQAGARVIVTEIDPICALQALMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSG---IIVLAEGRLMNLGCATGHPSFVMSCSFTNQVI 677
            +++G  EETTTGV RL+ M++ G L  P I VND++TK  FDN YG   S  DG+ R T++++AGK  VV GYG  G+G A      GA VIVTE+DPI AL+A M+G +V+ + D     +IFVTTTGN+DI+  +H K M + A++ N GHF+ EID+  L +      +    +T R    E + G   I V+AEGRL+NL    GHP+ VM  SF NQ +
Sbjct:  139 KILGGCEETTTGVHRLHAMEKEGALKMPVIAVNDAMTKYLFDNRYGTGQSAWDGINRTTNLLVAGKNVVVGGYGWCGRGVAMRAAGLGANVIVTEVDPIRALEARMDGYRVMRMADAARLGEIFVTTTGNRDILTAEHFKVMPDGAVLANSGHFNVEIDMEALTS------LAKSVKTVRHNIKEYDIGDRRINVIAEGRLVNLAAGDGHPAEVMDMSFANQAL 356          
BLAST of CX043269 vs. ExPASy Swiss-Prot
Match: SAHH_METTH (Adenosylhomocysteinase OS=Methanobacterium thermoautotrophicum GN=ahcY PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.038e-45
Identity = 107/277 (38.63%), Postives = 155/277 (55.96%), Query Frame = 3
Query:    3 KMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKQAGARVIVTEIDPICALQALMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRIT--IKPQTDRWVFPETNSGIIVLAEGRLMNLGC--ATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQ 821
            ++ + ++G  EETTTG+ RL  M  +G L FP + VND+ TK  FDN YG   S  D +M  T+++IAGK  VVCGYG  G+G A   +  GA VIVTE+DPI AL+A M+G +V+ + D + +ADI +T TGN D++       MK+  ++ N GHF+ EI+   LE    + R T  +K   + ++ P+    I +LAEGRL+NL      GHP+ +M  SF  Q ++   L +EK     +  VY  P  +D  V              LT++Q
Sbjct:  138 ELLDGIIGACEETTTGINRLRAMAADGALKFPVMAVNDAYTKYLFDNRYGTGQSTFDSIMGTTNMLIAGKTVVVCGYGWCGRGIAMRAEGLGASVIVTEVDPIRALEARMDGFRVMKVSDAVKEADILITATGNTDVVSESEFMNMKDGCVMANSGHFNVEINREALEE---LSRETGKVKEDIEVFIMPDGRK-IYLLAEGRLVNLASERGQGHPAEIMDMSFAMQALSARHLLQEKP----DPGVYRAPDEIDLMVARMKLDAMGIEIDELTEKQ 406          
BLAST of CX043269 vs. ExPASy Swiss-Prot
Match: SAHH_HALWD (Adenosylhomocysteinase OS=Haloquadratum walsbyi (strain DSM 16790) GN=achY PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.671e-40
Identity = 105/278 (37.77%), Postives = 149/278 (53.60%), Query Frame = 3
Query:   12 ERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKQAGARVIVTEIDPICALQALMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDV-----LGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGC--ATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQA 824
            + ++G +EETTTGV RL  M E+  L +P   VND+  K  FDN++G   S    +   T++  AGK  VV GYG  GKG A       A VIVTE++P  AL+A MEG +V+ + +  +  D+FVTTTGN+D+I  +  + M + AI+ N GHFD EI++     L ++TY     +      D          + VLAEGRL+NL    A GHP+ VM  SF  Q +   EL + KS+  Y+  V+ +P  LD +V              LT+ Q+
Sbjct:  154 DTIIGGAEETTTGVHRLRAMDEDDELQYPVFAVNDTPMKRLFDNVHGTGESALATIAMTTNLSYAGKNVVVAGYGYCGKGVAQKAAGQNANVIVTEVEPRRALEAHMEGYEVMPMNEAATRGDVFVTTTGNRDVITQEDFEVMSDGAILANAGHFDVEINLEELSELAIDTYEARDGVQAYELGD-------GRRLNVLAEGRLVNLAAPIALGHPAEVMDQSFGIQAVCVRELIENKSS--YDAGVHNVPDELDREVAEIKLKAEGVDIDSLTQTQS 422          
BLAST of CX043269 vs. ExPASy Swiss-Prot
Match: SAHH_HALSA (Adenosylhomocysteinase OS=Halobacterium salinarium GN=ahcY PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.632e-36
Identity = 98/281 (34.88%), Postives = 142/281 (50.53%), Query Frame = 3
Query:   12 ERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKQAGARVIVTEIDPICALQALMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGL--------ETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLG--CATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQA 824
            + ++G +EETTTGV RL  M ++  L +P   VND+  K  FDN++G   S    +   T++  AGK  VV GYGD G+G A       A VIVTE++P  AL+A MEG  V+ + +     D+F+TTTGNK++I   H ++M +  ++ N GHFD E+++  L        E   GV+   +               + VLAEGRL+NL      GHP  VM  SF  Q +   EL   +   +Y   V+ +P  LD ++              LT +QA
Sbjct:  149 DTIIGGTEETTTGVHRLRAMDDDDALEYPVFAVNDTPMKRLFDNVHGTGESALANIAMTTNLSWAGKDVVVAGYGDCGRGVAKKAAGQNANVIVTEVEPRRALEAHMEGYDVMPMAEAAEVGDVFLTTTGNKNVITRAHFERMDDGVVLANAGHFDVEVNLDHLSELAVSEREAREGVREYEL----------ADGRRLNVLAEGRLVNLASPIGLGHPVGVMDQSFGVQAVCVRELVANRE--EYAAGVHNVPDELDIEIAEIKLAAEGVEYDALTDDQA 417          
BLAST of CX043269 vs. ExPASy Swiss-Prot
Match: SAHH_STRFR (Adenosylhomocysteinase (Fragment) OS=Streptomyces fradiae GN=ahcY PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.231e-19
Identity = 53/104 (50.96%), Postives = 65/104 (62.50%), Query Frame = 3
Query:  513 PGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQA 824
            PG+ +  +KPQ   W F +    IIVL+EGRL+NLG ATGHPSFVMS SF +Q +AQ+EL+ +    +Y   VYVLPKHLDEKV            T L  EQA
Sbjct:    2 PGIVKDEVKPQVHTWTFADGKK-IIVLSEGRLLNLGNATGHPSFVMSNSFADQTLAQIELYTKPE--QYPTDVYVLPKHLDEKVARLHLDALGVKLTTLRPEQA 102          
The following BLAST results are available for this feature:
BLAST of CX043269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 245
Match NameE-valueIdentityDescription
SAHH_METAC1.812e-4545.54Adenosylhomocysteinase OS=Methanosarcina acetivora... [more]
SAHH_METTH4.038e-4538.63Adenosylhomocysteinase OS=Methanobacterium thermoa... [more]
SAHH_HALWD6.671e-4037.77Adenosylhomocysteinase OS=Haloquadratum walsbyi (s... [more]
SAHH_HALSA7.632e-3634.88Adenosylhomocysteinase OS=Halobacterium salinarium... [more]
SAHH_STRFR2.231e-1950.96Adenosylhomocysteinase (Fragment) OS=Streptomyces ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_10A03_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A03-B6-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043269 ID=CX043269; Name=CX043269; organism=Citrus sinensis; type=EST; length=826bp
ACAAAATGAAGGAAAGATTAGTTGGTGTTTCCGAAGAAACCACGACCGGT
GTCAAGAGATTGTATCAGATGCAAGAAAATGGAACCCTCTTGTTCCCTGC
CATCAATGTCAATGACTCTGTCACCAAGAGCAAGTTTGATAACTTGTATG
GATGCCGCCACTCGCTCCCAGATGGTTTGATGAGAGCTACTGATGTTATG
ATTGCCGGAAAGGTTGCTGTTGTTTGCGGTTATGGTGATGTTGGCAAGGG
TTGTGCTGCTGCTTTGAAGCAAGCCGGTGCTCGTGTAATTGTTACCGAGA
TTGATCCAATTTGCGCTCTCCAGGCTCTTATGGAGGGTCTTCAAGTCCTA
ACCCTTGAGGATGTCCTCTCCGATGCTGACATCTTTGTTACCACCACCGG
TAACAAGGACATCATCATGGTTGACCACATGAAGAAGATGAAGAACAATG
CAATTGTTTGCAACATTGGTCACTTTGATAATGAAATTGATGTGCTCGGT
CTTGAGACCTACCCGGGTGTTAAGCGCATTACCATCAAGCCCCAAACTGA
TAGGTGGGTCTTCCCCGAGACCAACTCAGGCATCATCGTGTTGGCTGAGG
GACGTCTCATGAACTTGGGATGTGCCACTGGGCACCCCAGCTTTGTGATG
TCCTGTTCCTTCACCAATCAGGTGATTGCCCAGCTTGAGCTCTGGAAGGA
GAAGAGCACCGGCAAGTACGAGAAGAAGGTGTATGTTCTGCCCAAGCACC
TCGATGAGAAGGTTGCTGCTCTTCACCTTGGCAAACTTGGAGCTAAGCTC
ACCAGGCTCACCAAGGAGCAGGCTGA
back to top