EY665385

Overview
NameEY665385
Unique NameEY665385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1051
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665385_ssr72 microsatellite EY665385_ssr72:72..83. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.536e-16
Identity = 45/97 (46.39%), Postives = 57/97 (58.76%), Query Frame = 3
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYG DR  +L        + P YLTGE PGDYG+D  GL+  P+ F++ +  E+I  +WAMLGA G   PE  +K G   G EAVWFK    + SEG
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEG 141          
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.536e-16
Identity = 45/97 (46.39%), Postives = 57/97 (58.76%), Query Frame = 3
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYGP+R  +L        E P YLTGE PGDYG+D  GL+  P+ F+K +  E+I  +WAMLGA G   PE   + G   G EAVWFK    + S+G
Sbjct:   51 WYGPNRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKGGSQIFSQG 143          
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.536e-16
Identity = 46/97 (47.42%), Postives = 57/97 (58.76%), Query Frame = 3
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYGPDR  +L        E P YLTGE PGDYG+D  GL+  P+ F+K +  E+I ++WAMLGA G   PE   + G   G EA WFK    + SEG
Sbjct:   29 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EASWFKAGSQIFSEG 121          
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.312e-16
Identity = 46/97 (47.42%), Postives = 56/97 (57.73%), Query Frame = 3
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYGPDR  +L        E P YLTGE PGDYG+D   L+  P+ F+K +  E+I  +WAMLGA G   PE   + G   G EAVWFK    + SEG
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEG 143          
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.325e-16
Identity = 43/97 (44.33%), Postives = 56/97 (57.73%), Query Frame = 3
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYGPDR  +L       ++ P YL GE PGDYG+D  GL+  P+ F+K +A E+I  +WAMLGA G   PE   K+      E VWFK    + S+G
Sbjct:   47 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDG 140          
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.325e-16
Identity = 43/97 (44.33%), Postives = 56/97 (57.73%), Query Frame = 3
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYGPDR  +L       ++ P YL GE PGDYG+D  GL+  P+ F++ +A E+I  +WAMLGA G   PE   K+      E VWFK    + SEG
Sbjct:   50 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEG 143          
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.325e-16
Identity = 45/97 (46.39%), Postives = 58/97 (59.79%), Query Frame = 3
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            W+GPD   +L        E P YLTGE PGDYG+D  GL+  P+ F+K +  E+I ++WAMLGA G   PE  ++ G   G EAVWFK    + SEG
Sbjct:   12 WHGPDGVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEG 104          
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.649e-16
Identity = 46/97 (47.42%), Postives = 59/97 (60.82%), Query Frame = 3
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYG DR ++L  G    S  P YL+GE PGDYG+D  GL+  P+ F+K +  E+I ++WAMLGA G   PE   K G   G EAVWFK    + +EG
Sbjct:   49 WYGSDRPLYL--GPFSGSP-PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFG-EAVWFKAGSQIFAEG 141          
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.649e-16
Identity = 48/98 (48.98%), Postives = 58/98 (59.18%), Query Frame = 3
Query:  318 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYGPDR    P+ L   SE  P YLTGE PGDYG+D   ++  P+ F+K +  E+I  +WAMLGA G   PE   K G   G EAVWFK    + SEG
Sbjct:   50 WYGPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFG-EAVWFKAGAQIFSEG 142          
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 9.635e-16
Identity = 46/97 (47.42%), Postives = 58/97 (59.79%), Query Frame = 3
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYG DR ++L  G L   E P YLTGE PGDYG+D  GL+  P+ F+K +  E+I  +WAMLGA G   PE   + G   G EA WFK    + S+G
Sbjct:   50 WYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAGWFKAGSQIFSDG 142          
The following BLAST results are available for this feature:
BLAST of EY665385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
CB23_TOBAC2.536e-1646.39Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB23_NICPL2.536e-1646.39Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB21_SOYBN2.536e-1647.42Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB25_PETSP3.312e-1647.42Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB23_SOLLC4.325e-1644.33Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU4.325e-1644.33Chlorophyll a-b binding protein of LHCII type III,... [more]
CB21_PEA4.325e-1646.39Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB23_POLMU5.649e-1647.42Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_PINTH5.649e-1648.98Chlorophyll a-b binding protein type I, chloroplas... [more]
CB21_WHEAT9.635e-1647.42Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-C10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665385 ID=EY665385; Name=EY665385; organism=Citrus sinensis; type=EST; length=1051bp
TTTTTTTTTTCCTTTCGCACCGCAGTACGGTCGGTATTCCGGGTCGACCC
ACGCGTCCGCTAACACAAAGAAGCAGCAGCAGCCACACTCTGAAGATGGC
TTCATTGGCAGCATCGTCCACTCCTGCTGCCTCCATTGGAGTTAAGGAGA
TGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGTTAGGACTTCAGCTCCA
GGTGCATCAAACCCTTCTACTTTCAAGCCCGTTGCTCTCTTCTCCAAGAA
GAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTCGCCGTCTCCCCCGTTA
ACGAAGAGCTCGCCAAGTGGTATGGTCCTGACCGAAGAATTTTCTTGCCC
GAGGGTCTCTTGGACAGATCTGAGATCCCTGAGTACTTGACCGGAGAAGT
TCCCGGAGACTATGGTTACGATCCTTTTGGTCTCAACAAGAAACCAGACG
ACTTCAGCAAATATCAGGCATATGAATTGATTTCTGCCAAATGGGCCATG
CTTGGTGCTGCTGGTTTCTCCATTCCGGAAACCTTTAACAAGTTTGGGGC
TACCTGTGGTCCTGAAGCTGTCTGGTTCAAGAACTGGGAAGCTCTACTTT
CTGAAGGAAAACCATTGGAACTACTTTACGAAAAAAAAATCCCATTCCAC
CCTTGTTTTTGCGGACATTGGTAAAAAATAGTTCTTGAAAGGGGAGGGAT
GAATATAATAGAAACCCCCAAACGGGTTGGAAATTTGGGAGGAAAAAGCC
CTCACCCCCGAGGGGCACAATAGAACACAAATGGGATATAGAAAAAAGAA
CTCAGGAACAATTTTAGAATGAGCTAAAAAAGCAAGAAAAAAAAAAAAAA
GAGAGGAAAATGCGAAGTTTTTGGCGAGTAATGGAAAATAATCATTCACC
CAAAGATATAAAATAAAAGATAAAATAACAGGAATAAATATAAAAAAAAA
AAAAGACATAAAATAAAAAAACCTCAGAAGTAGAACATTTAATGTGAAAA
AACATCAAGCGATGTACTAAAAAGAATTGGAAGTGGATAAGCAAAAAATG
A
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