CV885282

Overview
NameCV885282
Unique NameCV885282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885282 vs. ExPASy Swiss-Prot
Match: LADH_META3 (Lactaldehyde dehydrogenase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_1030 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.441e-29
Identity = 73/202 (36.14%), Postives = 119/202 (58.91%), Query Frame = -1
Query:  240 IKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXKLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRIGSVEEGIHHCNASNFGLQGCVFTKDINKAMLISDAMETGTVQINSAPARGPDHFPFQGFKDSGIGSQGVTNSINMMTKVKSTVIN 842
            + G F  SGQ C +V  VL+ + VAD           KL +G P +E  +I+ ++S  SA  +E L+  +  +G       +RE ++I+P +L+ +  D  +A  E F PVLP+IR+  + E ++  N SN+GL   VFT+DINKA+  +D +E G V IN++P    D+ PF G K SG+G +G+  +I+ M+++K+ ++N
Sbjct:  263 MSGKFLNSGQVCISVGRVLIEQEVADEFINKIVEKVKKLKIGNPLDEDTNISSLISLDSAERVEKLINKSIGQGGKLICGGKRENSIIYPTILE-ITADNILANIEIFAPVLPIIRVNDMNEALNQANNSNYGLHSGVFTQDINKALYFADNLEYGGVLINNSPTFRIDNMPFGGIKHSGLGREGIKYAIDEMSEIKTIIVN 463          
BLAST of CV885282 vs. ExPASy Swiss-Prot
Match: LADH_METM5 (Lactaldehyde dehydrogenase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_0090 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.548e-28
Identity = 74/202 (36.63%), Postives = 114/202 (56.44%), Query Frame = -1
Query:  240 IKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXKLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRIGSVEEGIHHCNASNFGLQGCVFTKDINKAMLISDAMETGTVQINSAPARGPDHFPFQGFKDSGIGSQGVTNSINMMTKVKSTVIN 842
            +K  F  +GQ C +V  VLV E V ++          KL +G P +   DI P++S  SA  IE L+  +  +G        R+ +LI P ++ N+  +  ++  E FGPVLP++++   EE +   N S +GLQ  VFT DINKAM I+D++E G + INS+P    D+ PF G K SG+G +G+  ++  M + K+ VI+
Sbjct:  263 VKSKFLNAGQVCISVGQVLVEEEVLETFTKHVIEETKKLILGNPLDTKTDIGPLISPESALRIENLIKKSVNEGGEVLIGGNRQNSLISPAVI-NIDENNILSKIETFGPVLPILKVKDSEEAVSIANNSKYGLQAGVFTNDINKAMKIADSLEYGGIMINSSPTFRKDNMPFGGVKKSGLGREGIKYTVEEMCETKTIVIH 463          
BLAST of CV885282 vs. ExPASy Swiss-Prot
Match: LADH_METJA (Lactaldehyde dehydrogenase OS=Methanocaldococcus jannaschii GN=MJ1411 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.761e-27
Identity = 71/203 (34.98%), Postives = 113/203 (55.67%), Query Frame = -1
Query:  240 IIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXKLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRIGSVEEGIHHCNASNFGLQGCVFTKDINKAMLISDAMETGTVQINSAPARGPDHFPFQGFKDSGIGSQGVTNSINMMTKVKSTVIN 845
            +IKG F Y+GQ C +V ++LV ES+AD            L VG P +E  D+ P++S   A ++E +V  A  +G       +R+  L +P +L+ V  D  +   E F PV+P+IR    EE I   N++ +GL   +FT DINK++  ++ +E G V IN +     D+ PF G K SG+G +GV  ++  M+ +K+ +I+
Sbjct:  262 LIKGSFIYAGQVCISVGMILVDESIADKFIEMFVNKAKVLNVGNPLDEKTDVGPLISVEHAEWVEKVVEKAIDEGGKLLLGGKRDKALFYPTILE-VDRDNILCKTETFAPVIPIIRTNE-EEMIDIANSTEYGLHSAIFTNDINKSLKFAENLEFGGVVINDSSLFRQDNMPFGGVKKSGLGREGVKYAMEEMSNIKTIIIS 462          
BLAST of CV885282 vs. ExPASy Swiss-Prot
Match: LADH_METMP (Lactaldehyde dehydrogenase OS=Methanococcus maripaludis GN=MMP1487 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.300e-27
Identity = 70/202 (34.65%), Postives = 115/202 (56.93%), Query Frame = -1
Query:  240 IKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXKLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRIGSVEEGIHHCNASNFGLQGCVFTKDINKAMLISDAMETGTVQINSAPARGPDHFPFQGFKDSGIGSQGVTNSINMMTKVKSTVIN 842
            +K  F  +GQ C +V  VLV E V ++          KL +G P +++ DI P++S  SA  IE L+  +  +G        R+ +LI P ++ N+  +  ++  E FGP+LP++ +   EE ++  N S +GLQ  +FT +IN AM I+D +E G + INS+P    D+ PF G K SG+G +G+  ++  M++ K+ VI+
Sbjct:  263 VKSKFLNAGQVCISVGQVLVEEEVVETFTKYVIEETKKLILGNPLDKNTDIGPLISPESALRIENLIKQSVSEGGELLIGGNRQNSLISPAVI-NIDEENILSKIETFGPILPILTVKDSEEAVNIANNSKYGLQAGLFTNNINNAMKIADELEYGGIMINSSPTFRKDNMPFGGVKKSGLGREGIKYTVEEMSETKTVVIH 463          
BLAST of CV885282 vs. ExPASy Swiss-Prot
Match: LADH_METVS (Lactaldehyde dehydrogenase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=Mevan_0796 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.665e-26
Identity = 68/202 (33.66%), Postives = 111/202 (54.95%), Query Frame = -1
Query:  240 IKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXKLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRIGSVEEGIHHCNASNFGLQGCVFTKDINKAMLISDAMETGTVQINSAPARGPDHFPFQGFKDSGIGSQGVTNSINMMTKVKSTVIN 842
            +K  F  SGQ C +V  V+V E V ++          KL +G P +E  D+ P+++  SA  +E L+ ++  +G        R  +LI P +L N+  D  ++  E FGP+LP+++    E  ++  N S +GLQ  +FT DINKAM  ++ +E G V +N +P    D+ PF G K SG+G +G+  ++  M + K+ VI+
Sbjct:  263 VKSKFLNSGQVCISVGKVIVEEEVLETFTKKVIEETKKLVLGNPLDEKTDLGPLITPESALRVEILIKESISEGGELLIGGNRSNSLISPAVL-NIDEDNILSKVEAFGPILPILKAKDDEHALNIANNSKYGLQAGIFTNDINKAMKFANKLEYGGVIVNGSPTFRKDNMPFGGIKKSGLGKEGIKYAVEEMCETKTVVIH 463          
BLAST of CV885282 vs. ExPASy Swiss-Prot
Match: AL1A2_CHICK (Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A2 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.015e-23
Identity = 75/206 (36.41%), Postives = 105/206 (50.97%), Query Frame = -1
Query:  234 KGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXKLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATF-C--QEYRREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRIGSVEEGIHHCNASNFGLQGCVFTKDINKAMLISDAMETGTVQINSAPARGPDHFPFQGFKDSGIGSQGVTNSINMMTKVKSTVINLP 839
            +G F   GQ CTA   + V ES+ +           +  VG P + + +  P + +   N I  L+     +GA   C  +   R+G  I P +  NV  DMRIA EE FGPV  ++R  +V+E I   N S+FGL   VFT DINKA+ +S AM+ GTV IN   A      PF GFK SG G +   + +   ++VK+  I +P
Sbjct:  310 QGVFFNQGQCCTAGSRIYVEESIYEEFVRRSVERAKRRVVGSPFDPTTEQGPQIDKKQYNKILELIQSGITEGAKLECGGKGLGRKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTVDEVIERANNSDFGLVAAVFTNDINKALTVSSAMQAGTVWINCYNALNAQS-PFGGFKMSGNGREMGESGLREYSEVKTVTIKIP 514          
BLAST of CV885282 vs. ExPASy Swiss-Prot
Match: AL1A2_RAT (Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.863e-23
Identity = 73/206 (35.44%), Postives = 105/206 (50.97%), Query Frame = -1
Query:  234 KGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXKLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATF-C--QEYRREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRIGSVEEGIHHCNASNFGLQGCVFTKDINKAMLISDAMETGTVQINSAPARGPDHFPFQGFKDSGIGSQGVTNSINMMTKVKSTVINLP 839
            +G F   GQ CTA   + V ES+ +           +  VG P + + +  P + +   N I  L+     +GA   C  +   R+G  I P +  NV  DMRIA EE FGPV  ++R  +++E I   N S+FGL   VFT DINKA+++S AM+ GTV IN   A      PF GFK SG G +     +   ++VK+  + +P
Sbjct:  310 QGVFFNQGQCCTAGSRIFVEESIYEEFVKRSVERAKRRIVGSPFDPTTEQGPQIDKKQYNKILELIQSGVAEGAKLECGGKGLGRKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALMVSSAMQAGTVWINCYNALNAQS-PFGGFKMSGNGREMGEFGLREYSEVKTVTVKIP 514          
BLAST of CV885282 vs. ExPASy Swiss-Prot
Match: AL1A2_MOUSE (Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 7.657e-23
Identity = 72/206 (34.95%), Postives = 105/206 (50.97%), Query Frame = -1
Query:  234 KGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXKLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATF-C--QEYRREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRIGSVEEGIHHCNASNFGLQGCVFTKDINKAMLISDAMETGTVQINSAPARGPDHFPFQGFKDSGIGSQGVTNSINMMTKVKSTVINLP 839
            +G F   GQ CTA   + V ES+ +           +  VG P + + +  P + +   N +  L+     +GA   C  +   R+G  I P +  NV  DMRIA EE FGPV  ++R  +++E I   N S+FGL   VFT DINKA+++S AM+ GTV IN   A      PF GFK SG G +     +   ++VK+  + +P
Sbjct:  310 QGVFFNQGQCCTAGSRIFVEESIYEEFVKRSVERAKRRIVGSPFDPTTEQGPQIDKKQYNKVLELIQSGVAEGAKLECGGKGLGRKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALMVSSAMQAGTVWINCYNALNAQS-PFGGFKMSGNGREMGEFGLREYSEVKTVTVKIP 514          
BLAST of CV885282 vs. ExPASy Swiss-Prot
Match: AL1A2_HUMAN (Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2 PE=1 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 1.000e-22
Identity = 73/206 (35.44%), Postives = 104/206 (50.49%), Query Frame = -1
Query:  234 KGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXKLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATF-C--QEYRREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRIGSVEEGIHHCNASNFGLQGCVFTKDINKAMLISDAMETGTVQINSAPARGPDHFPFQGFKDSGIGSQGVTNSINMMTKVKSTVINLP 839
            +G F   GQ CTA   + V ES+ +           +  VG P + + +  P + +   N I  L+     +GA   C  +   R+G  I P +  NV  DMRIA EE FGPV  ++R  +++E I   N S+FGL   VFT DINKA+ +S AM+ GTV IN   A      PF GFK SG G +     +   ++VK+  + +P
Sbjct:  310 QGVFFNQGQCCTAGSRIFVEESIYEEFVRRSVERAKRRVVGSPFDPTTEQGPQIDKKQYNKILELIQSGVAEGAKLECGGKGLGRKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALTVSSAMQAGTVWINCYNALNAQS-PFGGFKMSGNGREMGEFGLREYSEVKTVTVKIP 514          
BLAST of CV885282 vs. ExPASy Swiss-Prot
Match: NAHF_PSEU8 (Salicylaldehyde dehydrogenase OS=Pseudomonas sp. (strain C18) GN=doxF PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.306e-22
Identity = 67/196 (34.18%), Postives = 100/196 (51.02%), Query Frame = -1
Query:  255 GGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXKLTVGPP--EESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRIGSVEEGIHHCNASNFGLQGCVFTKDINKAMLISDAMETGTVQINSAPARGPDHFPFQGFKDSGIGSQGVTNSINMMTKVK 836
            G F + GQ C + + ++V E +AD           +L+ G P     C I P+VS +S   I GL  DA  KGA        +G L+   +LD+V+ DMRI  EE FGP+  VIR     E +   N S +GL   VF +DIN+A+ +  ++E G+V IN +  +     P+ G K++G G       I+  T++K
Sbjct:  275 GSFLFQGQICMSTERLIVDEKIADEFVAKFVEKTKRLSAGDPCVTGDCIIGPMVSPNSGERINGLFKDAIDKGAKVVCGGLAQGALMPATILDHVKSDMRIYDEETFGPITVVIRCKGEAEAVRIANDSVYGLSSGVFGRDINRALRVGMSIEYGSVHINGSTVQNEAQAPYGGTKNTGYGRFDGRAVIDEFTEIK 470          
The following BLAST results are available for this feature:
BLAST of CV885282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 339
Match NameE-valueIdentityDescription
LADH_META31.441e-2936.14Lactaldehyde dehydrogenase OS=Methanococcus aeolic... [more]
LADH_METM53.548e-2836.63Lactaldehyde dehydrogenase OS=Methanococcus maripa... [more]
LADH_METJA1.761e-2734.98Lactaldehyde dehydrogenase OS=Methanocaldococcus j... [more]
LADH_METMP2.300e-2734.65Lactaldehyde dehydrogenase OS=Methanococcus maripa... [more]
LADH_METVS5.665e-2633.66Lactaldehyde dehydrogenase OS=Methanococcus vannie... [more]
AL1A2_CHICK2.015e-2336.41Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A... [more]
AL1A2_RAT5.863e-2335.44Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Al... [more]
AL1A2_MOUSE7.657e-2334.95Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2... [more]
AL1A2_HUMAN1.000e-2235.44Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2... [more]
NAHF_PSEU81.306e-2234.18Salicylaldehyde dehydrogenase OS=Pseudomonas sp. (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_013G05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885282 ID=CV885282; Name=CV885282; organism=Citrus sinensis; type=EST; length=845bp
GAAACTATTGCGTTCTGTCTCACATATTACATATATGTTGATGCACATAT
CTCCATTATTTATCATCTGCAAAGCGTGAAGTACTAGAAAGGCAGATACA
TAATACAATTCTGCAGATAAAACTCGTCCCTCTTCATCGCTAGTTATTAT
ACCTAAACTAAAATACCGTTCGTTCTTAACTGTTTCCTAATGGCTTAATT
ATACTTGAATTAACCCATGGTATAAGAAGGACTTGGCAAATTGATAACAG
TGCTTTTGACCTTAGTCATCATGTTGATGCTGTTGGTAACACCTTGTGAG
CCAATTCCACTGTCCTTAAAACCCTGGAAAGGAAAATGATCTGGTCCACG
AGCTGGGGCAGAGTTGATCTGGACGGTTCCTGTCTCCATTGCATCGCTGA
TCAACATTGCTTTGTTAATGTCCTTTGTAAATACACAGCCCTGAAGTCCA
AAGTTGCTAGCATTGCAGTGGTGAATACCTTCCTCAACAGAGCCAATCCT
GATAACAGGCAGAACCGGTCCGAATGGCTCCTCCCATGCGATCCTCATAT
CGGGCCTAACATTGTCAAGCAACAAGGGCCAGATGAGGTTGCCTTCTCTC
CTGTACTCTTGACAGAATGTTGCTCCTTTCTGTTTGGCATCCATAACCAG
CCCTTCAATGAAATTTGCAGATGATTCCGACACAACTGGAGTGATATCAC
AGCTTTCTTCAGGAGGGCCAACTGTCAGTTTCACCACTTTAGCCTTAACC
TTCTCGACCAGGGAATCTGCTACAGATTCCATCACCAAGACAACCTTAAC
TGCAGTGCATCTTTGACCACTGTAAGAAAATCCTCCTTTTATTAT
back to top