CV885279

Overview
NameCV885279
Unique NameCV885279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK2_RAT (S-adenosylmethionine synthetase isoform type-2 OS=Rattus norvegicus GN=Mat2a PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.459e-34
Identity = 75/126 (59.52%), Postives = 92/126 (73.02%), Query Frame = -3
Query:  253 GAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 630
            GAHGGGAFSGKD TKVDRS AY  R  AKS+V  GL RR +VQVSYAIGV  PLS+ +  YGT +  ++E+L+IVK +FD RPG++  +LDLK+     + +TAAYGHFGRD   F WEV K LK+
Sbjct:  275 GAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKNNFDLRPGVIVRDLDLKK---PIYQRTAAYGHFGRD--SFPWEVPKKLKY 395          
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK_SACD2 (S-adenosylmethionine synthetase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=metK PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.823e-34
Identity = 73/117 (62.39%), Postives = 87/117 (74.36%), Query Frame = -3
Query:  274 HGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 624
            HGGGAFSGKDP+KVDRS AY  R  AK+IVA GLA RC +QVSYAIGV EP S+ V+++GTG I D EI K+V + FD RP  +   LDL R     + KTAAYGHFGR++P+FTWE
Sbjct:  259 HGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRCEIQVSYAIGVAEPTSISVNTFGTGSIADSEISKLVAQHFDLRPRGIIEMLDLLR---PIYRKTAAYGHFGREEPEFTWE 372          
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK_RALSO (S-adenosylmethionine synthetase OS=Ralstonia solanacearum GN=metK PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.823e-34
Identity = 72/117 (61.54%), Postives = 89/117 (76.07%), Query Frame = -3
Query:  274 HGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 624
            HGGGAFSGKDP+KVDRS AY  R  AK++VA GLAR+C VQVSYAIGV  P+++ V + GTG IPD++I K+V+E FD RP  +   LDL R   G   KTAAYGHFGR++P+F+WE
Sbjct:  260 HGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLARQCQVQVSYAIGVARPINITVYTEGTGVIPDEQIAKLVQEHFDLRPKGIVQMLDLLRPIYG---KTAAYGHFGREEPEFSWE 373          
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK_POLSQ (S-adenosylmethionine synthetase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=metK PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.605e-34
Identity = 69/117 (58.97%), Postives = 90/117 (76.92%), Query Frame = -3
Query:  274 HGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 624
            HGGGAFSGKDP+KVDRS AY  R  AK++VA GLA +C++Q+SYAIGV +P SV V ++GTGKI D++I ++V E+FD RP  +   L+L R     + KTAAYGHFGR++P+FTWE
Sbjct:  261 HGGGAFSGKDPSKVDRSAAYAGRYVAKNVVAAGLASKCLIQISYAIGVAKPTSVMVSTFGTGKISDEKIAQLVSENFDLRPKGIVKMLNLLR---PIYRKTAAYGHFGREEPEFTWE 374          
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK_NEIMF (S-adenosylmethionine synthetase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=metK PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.605e-34
Identity = 69/117 (58.97%), Postives = 90/117 (76.92%), Query Frame = -3
Query:  274 HGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 624
            HGGGAFSGKDP+KVDRS AY  R  AK+IVA GLA +C +QVSYAIGV EP S+ +D++GTGKI +++++ +V+E FD RP  +   LDL R     + K+AAYGHFGR++P+FTWE
Sbjct:  262 HGGGAFSGKDPSKVDRSAAYACRYVAKNIVAAGLATQCQIQVSYAIGVAEPTSISIDTFGTGKISEEKLITLVREHFDLRPKGIVQMLDLLR---PIYSKSAAYGHFGREEPEFTWE 375          
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK_NEIMB (S-adenosylmethionine synthetase OS=Neisseria meningitidis serogroup B GN=metK PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.605e-34
Identity = 69/117 (58.97%), Postives = 90/117 (76.92%), Query Frame = -3
Query:  274 HGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 624
            HGGGAFSGKDP+KVDRS AY  R  AK+IVA GLA +C +QVSYAIGV EP S+ +D++GTGKI +++++ +V+E FD RP  +   LDL R     + K+AAYGHFGR++P+FTWE
Sbjct:  262 HGGGAFSGKDPSKVDRSAAYACRYVAKNIVAAGLATQCQIQVSYAIGVAEPTSISIDTFGTGKISEEKLIALVREHFDLRPKGIVQMLDLLR---PIYSKSAAYGHFGREEPEFTWE 375          
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK_NEIMA (S-adenosylmethionine synthetase OS=Neisseria meningitidis serogroup A GN=metK PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.605e-34
Identity = 69/117 (58.97%), Postives = 90/117 (76.92%), Query Frame = -3
Query:  274 HGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 624
            HGGGAFSGKDP+KVDRS AY  R  AK+IVA GLA +C +QVSYAIGV EP S+ +D++GTGKI +++++ +V+E FD RP  +   LDL R     + K+AAYGHFGR++P+FTWE
Sbjct:  262 HGGGAFSGKDPSKVDRSAAYACRYVAKNIVAAGLATQCQIQVSYAIGVAEPTSISIDTFGTGKISEEKLITLVREHFDLRPKGIVQMLDLLR---PIYSKSAAYGHFGREEPEFTWE 375          
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK_NEIM0 (S-adenosylmethionine synthetase OS=Neisseria meningitidis serogroup C (strain 053442) GN=metK PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.605e-34
Identity = 69/117 (58.97%), Postives = 90/117 (76.92%), Query Frame = -3
Query:  274 HGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 624
            HGGGAFSGKDP+KVDRS AY  R  AK+IVA GLA +C +QVSYAIGV EP S+ +D++GTGKI +++++ +V+E FD RP  +   LDL R     + K+AAYGHFGR++P+FTWE
Sbjct:  262 HGGGAFSGKDPSKVDRSAAYACRYVAKNIVAAGLATQCQIQVSYAIGVAEPTSISIDTFGTGKISEEKLITLVREHFDLRPKGIVQMLDLLR---PIYSKSAAYGHFGREEPEFTWE 375          
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK_FRAP2 (S-adenosylmethionine synthetase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=metK PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.605e-34
Identity = 71/119 (59.66%), Postives = 92/119 (77.31%), Query Frame = -3
Query:  268 HGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVV 624
            HGGGAFSGKDP+KVDRSGAY+ R  AK++VA GLA +C VQV+YAIGV +P+S+ V+++GTGKI D +I K+V E+FD R G +  NLDL R     + KT+ YGHFGR+ P+FTWE +
Sbjct:  259 HGGGAFSGKDPSKVDRSGAYMGRYIAKNVVAAGLADKCEVQVAYAIGVAKPVSLMVNTFGTGKISDSKIEKLVSETFDLRVGKIIENLDLLR---PIYRKTSNYGHFGRELPEFTWEKI 374          
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK_COXBN (S-adenosylmethionine synthetase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=metK PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.605e-34
Identity = 69/117 (58.97%), Postives = 86/117 (73.50%), Query Frame = -3
Query:  274 HGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 624
            HGGG FSGKDP+KVDRSGAY  R  AK+IVA GLA RC +QVSYAIGV EP S+ V+++GTGKI +    +++KE FD RPG +   L+L R     +  TA YGHFGR++P+FTWE
Sbjct:  259 HGGGCFSGKDPSKVDRSGAYAARYVAKNIVAGGLADRCEIQVSYAIGVAEPTSISVETFGTGKIDEVRTQQLIKEHFDLRPGKIIEELNLLR---SIYKATATYGHFGREEPEFTWE 372          
The following BLAST results are available for this feature:
BLAST of CV885279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK2_RAT4.459e-3459.52S-adenosylmethionine synthetase isoform type-2 OS=... [more]
METK_SACD25.823e-3462.39S-adenosylmethionine synthetase OS=Saccharophagus ... [more]
METK_RALSO5.823e-3461.54S-adenosylmethionine synthetase OS=Ralstonia solan... [more]
METK_POLSQ7.605e-3458.97S-adenosylmethionine synthetase OS=Polynucleobacte... [more]
METK_NEIMF7.605e-3458.97S-adenosylmethionine synthetase OS=Neisseria menin... [more]
METK_NEIMB7.605e-3458.97S-adenosylmethionine synthetase OS=Neisseria menin... [more]
METK_NEIMA7.605e-3458.97S-adenosylmethionine synthetase OS=Neisseria menin... [more]
METK_NEIM07.605e-3458.97S-adenosylmethionine synthetase OS=Neisseria menin... [more]
METK_FRAP27.605e-3459.66S-adenosylmethionine synthetase OS=Francisella phi... [more]
METK_COXBN7.605e-3458.97S-adenosylmethionine synthetase OS=Coxiella burnet... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013G03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885279 ID=CV885279; Name=CV885279; organism=Citrus sinensis; type=EST; length=632bp
CTCAATCGATATCACTACACAACAGTGGTGACATGGTACATTAAACCAAA
ACCAAAAAAGAAGTGGGGAAAGAAGAAAAAGAAAGGAATTGAATGGGGAA
CATGTATGAGTTCTGAACACAGGAGATTTGCTTAGTATTACAAAGCAGCA
GCAAGATAATATTCAAATTATTCATCCACTACCAATAGAAGCAAACTTGA
ACAGCAGGGATAGTTTTCACTTTTCAACTCAAATTTAAGCTTGAGGCTTT
TCCCACTTGAGGGGCTTCACAACTTCCCAAGTGAAGTCTGGGTCATCCCT
GCCAAAGTGTCCATAGGCAGCAGTCTTCAAGAACCTGCCATTACCGCCCC
TTTTGAGATCCAAATTGATGGTCATCATTCCTGGCCTGAAATCAAAGCTT
TCCTTCACAATTTTGAGGATCTCCTTGTCAGGAATCTTGCCGGTTCCATA
TGAGTCCACAAAAACAGACAATGGCTCAGGCACACCAATGGCATAGGAGA
CTTGGACAATGCACCTGCGAGCAAGCCCGTTTGCAACAATGCTCTTAGCA
GCCTGCCTAACAATGTATGCACCACTCCTATCCACCTTAGTAGGGTCTTT
TCCAGAGAAAGCACCGCCACCATGGGCTCCCC
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