CV885279

Overview
NameCV885279
Unique NameCV885279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK_OSTTA (S-adenosylmethionine synthetase OS=Ostreococcus tauri GN=METK PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.154e-48
Identity = 95/125 (76.00%), Postives = 105/125 (84.00%), Query Frame = -3
Query:  259 GAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPD-FTWEVVKPL 630
            GAHGGGAFSGKDPTKVDRSGAYI RQ AKSIVA GLARR + Q+SYAIGV +PLS+ VD+YG+GKIPD EIL+ VKE FDFR GM+  +LDLKRGGN R+  TAAYGHFGRDD D FTWE V PL
Sbjct:  262 GAHGGGAFSGKDPTKVDRSGAYIARQVAKSIVAAGLARRALFQISYAIGVAQPLSIHVDTYGSGKIPDSEILEKVKEKFDFRAGMIGKSLDLKRGGNKRYQTTAAYGHFGRDDTDVFTWEKVVPL 386          
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK2_PEA (S-adenosylmethionine synthetase 2 OS=Pisum sativum GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 6.974e-48
Identity = 92/109 (84.40%), Postives = 101/109 (92.66%), Query Frame = -3
Query:  304 GAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHF 630
            GAHGGGAFSGKDPTKVDRSGAYIVR+AAKSIVANGLARRC+VQVSYAIGVPEPLSVFVDSYGTGKIPD+EIL IVKE+FDFRPGM++I+LDL RGGNGRF + +    F
Sbjct:  265 GAHGGGAFSGKDPTKVDRSGAYIVREAAKSIVANGLARRCLVQVSYAIGVPEPLSVFVDSYGTGKIPDREILNIVKEAFDFRPGMISISLDLLRGGNGRFFEDSCIWTF 373          

HSP 2 Score: 23.0978 bits (48), Expect = 6.974e-48
Identity = 6/9 (66.67%), Postives = 7/9 (77.78%), Query Frame = -2
Query:  302 EDCCLWTLW 328
            ED C+WT W
Sbjct:  366 EDSCIWTFW 374          
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK_DICDI (S-adenosylmethionine synthetase OS=Dictyostelium discoideum GN=metK PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.869e-40
Identity = 85/125 (68.00%), Postives = 96/125 (76.80%), Query Frame = -3
Query:  256 GAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 630
            GAHGGGAFSGKD TKVDRSGAY  R  AKS+VA GLA RC+VQVSY+IGV +PLSVFVD+YGTGK  D EIL I+  +FD RPG +  +L L R     F KTA+ GHFGR+DPDFTWE VK LK
Sbjct:  262 GAHGGGAFSGKDATKVDRSGAYAARWIAKSLVAAGLADRCLVQVSYSIGVAKPLSVFVDTYGTGKKTDAEILAIIDNNFDLRPGCLMRDLQLTR---PIFQKTASGGHFGRNDPDFTWETVKELK 383          
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK_SYNWW (S-adenosylmethionine synthetase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=metK PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.222e-36
Identity = 71/117 (60.68%), Postives = 94/117 (80.34%), Query Frame = -3
Query:  274 HGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 624
            HGGGAFSGKDPTKVDRS +Y++R  AK+IVA GLA RC +QV+YAIGV  PLS+ V+++GTGKI D +I++++K++FD RP  +  +LDL+R     + KTAAYGHFGR+D +FTWE
Sbjct:  269 HGGGAFSGKDPTKVDRSASYMLRYVAKNIVAAGLAERCEIQVAYAIGVANPLSINVNTFGTGKISDDKIIELIKKNFDLRPAAIIRDLDLRR---PIYRKTAAYGHFGREDAEFTWE 382          
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK_GEOSM (S-adenosylmethionine synthetase OS=Geobacter sp. (strain M21) GN=metK PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.126e-36
Identity = 76/119 (63.87%), Postives = 90/119 (75.63%), Query Frame = -3
Query:  274 GAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 630
            GAHGGGAFSGKDP+KVDRS AY+ R  AK++VA+G+  RC VQV+YAIGV EP+SV VD  GTGKIP K I +IV+E FD RP  +   LDL R     + KTAAYGHFGR+ P+FTWE
Sbjct:  260 GAHGGGAFSGKDPSKVDRSAAYMGRYVAKNLVASGVCERCEVQVAYAIGVAEPVSVMVDCNGTGKIPSKRISEIVREVFDMRPRAIIEQLDLLR---PIYRKTAAYGHFGRELPEFTWE 375          
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK_ACACA (S-adenosylmethionine synthetase OS=Acanthamoeba castellanii GN=metK PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.126e-36
Identity = 79/128 (61.72%), Postives = 93/128 (72.66%), Query Frame = -3
Query:  253 GAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGT--GKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 630
            GAHGGGAFSGKDP+KVDRS AY  R  AKS+VA GLA R +VQVSYAIGV  PLSVFVDSYGT  G   D+++L I K +FD RPG +  +L L+R     + KTA +GHFGR+DPDF WE  K L +
Sbjct:  264 GAHGGGAFSGKDPSKVDRSAAYAARWIAKSLVARGLANRALVQVSYAIGVSHPLSVFVDSYGTAQGGRTDEDLLAISKSNFDLRPGKIINDLQLRR---PIYEKTAYHGHFGRNDPDFLWEAPKKLNF 388          
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK_GEOSL (S-adenosylmethionine synthetase OS=Geobacter sulfurreducens GN=metK PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.364e-35
Identity = 75/119 (63.03%), Postives = 89/119 (74.79%), Query Frame = -3
Query:  274 GAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 630
            GAHGGGAFSGKDP+KVDRS AY+ R  AK++VA GL  RC VQV+YAIGV EP+SV VD+ GTGKIP   I +I++E FD RP  +   LDL R     + KTAAYGHFGR+ P+FTWE
Sbjct:  260 GAHGGGAFSGKDPSKVDRSAAYMGRYVAKNLVAAGLCERCEVQVAYAIGVAEPVSVMVDTAGTGKIPSARIAEIIREVFDLRPRAIIEQLDLLR---PIYRKTAAYGHFGRELPEFTWE 375          
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK_CELJU (S-adenosylmethionine synthetase OS=Cellvibrio japonicus (strain Ueda107) GN=metK PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.364e-35
Identity = 73/117 (62.39%), Postives = 91/117 (77.78%), Query Frame = -3
Query:  274 HGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 624
            HGGGAFSGKDP+KVDRS AY  R  AK+IVA GLA +C +QVSYAIGV EP S+ ++++GTGK+PD EI+K+V+E FD RP  +   L+LKR     + +TAAYGHFGR+ PDFTWE
Sbjct:  259 HGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLADKCEIQVSYAIGVAEPTSISINTFGTGKLPDAEIIKLVREHFDLRPRGLIEMLNLKR---PIYRQTAAYGHFGRELPDFTWE 372          
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK_SYMTH (S-adenosylmethionine synthetase OS=Symbiobacterium thermophilum GN=metK PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.088e-35
Identity = 71/117 (60.68%), Postives = 90/117 (76.92%), Query Frame = -3
Query:  274 HGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 624
            HGGGAFSGKDPTKVDRSGAY  R  AK+IVA GLAR+C VQV+YAIGV  P+S+ V ++GTGK+PD+ + ++V+E+FD RPG +  +LDL+R     + + AAYGHFGR D D  WE
Sbjct:  271 HGGGAFSGKDPTKVDRSGAYAARWVAKNIVAAGLARKCEVQVAYAIGVAHPVSILVTTFGTGKLPDERLAQLVRETFDLRPGAIIRDLDLRR---PIYRQVAAYGHFGRPDLDLPWE 384          
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK5_CAEEL (Probable S-adenosylmethionine synthetase 5 OS=Caenorhabditis elegans GN=sams-5 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.088e-35
Identity = 78/128 (60.94%), Postives = 92/128 (71.88%), Query Frame = -3
Query:  247 GAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 630
            GAHGGGAFSGKDPTKVDRS AY  R  AKS+V  GL RRC+VQVSYAIGV +PLSV V S+GT  + + E+LKIV ++FD RPGM+  NLDLKR     +  TA  GHFG +  DF WE  + LK +K
Sbjct:  263 GAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAKPLSVMVFSFGTSALNEAELLKIVNDNFDLRPGMIIKNLDLKR---AIYEPTAENGHFGHN--DFPWEQARKLKIDK 385          
The following BLAST results are available for this feature:
BLAST of CV885279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_OSTTA4.154e-4876.00S-adenosylmethionine synthetase OS=Ostreococcus ta... [more]
METK2_PEA6.974e-4884.40S-adenosylmethionine synthetase 2 OS=Pisum sativum... [more]
METK_DICDI1.869e-4068.00S-adenosylmethionine synthetase OS=Dictyostelium d... [more]
METK_SYNWW6.222e-3660.68S-adenosylmethionine synthetase OS=Syntrophomonas ... [more]
METK_GEOSM8.126e-3663.87S-adenosylmethionine synthetase OS=Geobacter sp. (... [more]
METK_ACACA8.126e-3661.72S-adenosylmethionine synthetase OS=Acanthamoeba ca... [more]
METK_GEOSL2.364e-3563.03S-adenosylmethionine synthetase OS=Geobacter sulfu... [more]
METK_CELJU2.364e-3562.39S-adenosylmethionine synthetase OS=Cellvibrio japo... [more]
METK_SYMTH3.088e-3560.68S-adenosylmethionine synthetase OS=Symbiobacterium... [more]
METK5_CAEEL3.088e-3560.94Probable S-adenosylmethionine synthetase 5 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013G03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885279 ID=CV885279; Name=CV885279; organism=Citrus sinensis; type=EST; length=632bp
CTCAATCGATATCACTACACAACAGTGGTGACATGGTACATTAAACCAAA
ACCAAAAAAGAAGTGGGGAAAGAAGAAAAAGAAAGGAATTGAATGGGGAA
CATGTATGAGTTCTGAACACAGGAGATTTGCTTAGTATTACAAAGCAGCA
GCAAGATAATATTCAAATTATTCATCCACTACCAATAGAAGCAAACTTGA
ACAGCAGGGATAGTTTTCACTTTTCAACTCAAATTTAAGCTTGAGGCTTT
TCCCACTTGAGGGGCTTCACAACTTCCCAAGTGAAGTCTGGGTCATCCCT
GCCAAAGTGTCCATAGGCAGCAGTCTTCAAGAACCTGCCATTACCGCCCC
TTTTGAGATCCAAATTGATGGTCATCATTCCTGGCCTGAAATCAAAGCTT
TCCTTCACAATTTTGAGGATCTCCTTGTCAGGAATCTTGCCGGTTCCATA
TGAGTCCACAAAAACAGACAATGGCTCAGGCACACCAATGGCATAGGAGA
CTTGGACAATGCACCTGCGAGCAAGCCCGTTTGCAACAATGCTCTTAGCA
GCCTGCCTAACAATGTATGCACCACTCCTATCCACCTTAGTAGGGTCTTT
TCCAGAGAAAGCACCGCCACCATGGGCTCCCC
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