CV885279

Overview
NameCV885279
Unique NameCV885279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK_GEOUR (S-adenosylmethionine synthetase OS=Geobacter uraniireducens (strain Rf4) GN=metK PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.033e-35
Identity = 75/119 (63.03%), Postives = 89/119 (74.79%), Query Frame = -3
Query:  274 GAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 630
            GAHGGGAFSGKDP+KVDRS AY+ R  AK++VA GL  +C VQV+YAIGV EP+SV VD+ GTGKIP   I +IV+E FD RP  +   LDL R     + KTAAYGHFGR+ P+FTWE
Sbjct:  260 GAHGGGAFSGKDPSKVDRSAAYMGRYVAKNLVAAGLCEKCEVQVAYAIGVAEPVSVMVDTSGTGKIPSARIAQIVREVFDLRPRAIIEQLDLLR---PIYKKTAAYGHFGRELPEFTWE 375          
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK_DECAR (S-adenosylmethionine synthetase OS=Dechloromonas aromatica (strain RCB) GN=metK PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.033e-35
Identity = 72/117 (61.54%), Postives = 89/117 (76.07%), Query Frame = -3
Query:  274 HGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 624
            HGGGAFSGKDP+KVDRS AY  R  AK+IVA GLA RC+VQVSYAIGV EP S+ V++YGTGK+ ++ +  +V++ FD RP  +   LDL R     + KTAAYGHFGRD+P+FTWE
Sbjct:  260 HGGGAFSGKDPSKVDRSAAYATRYVAKNIVAAGLASRCLVQVSYAIGVAEPTSIMVETYGTGKVSNETLTALVRKHFDLRPKGIVNMLDLLR---PIYQKTAAYGHFGRDEPEFTWE 373          
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK_PELCD (S-adenosylmethionine synthetase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=metK PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.267e-35
Identity = 70/119 (58.82%), Postives = 91/119 (76.47%), Query Frame = -3
Query:  274 GAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 630
            G+HGGGAFSGKDP+KVDRS +Y+ R  AK++VA  LAR+C VQ++YAIGV EP+S+ V+++GTG +P  EI +IV+E FD RP  +   LDL R     + KTAAYGHFGR+ P+FTWE
Sbjct:  260 GSHGGGAFSGKDPSKVDRSASYMARYVAKNVVAAKLARKCEVQIAYAIGVAEPVSIMVNTFGTGVLPSNEIARIVREEFDMRPAAIIETLDLLR---PIYRKTAAYGHFGRELPEFTWE 375          
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK_GEOMG (S-adenosylmethionine synthetase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=metK PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.879e-35
Identity = 75/119 (63.03%), Postives = 89/119 (74.79%), Query Frame = -3
Query:  274 GAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 630
            GAHGGGAFSGKDP+KVDRS AY+ R  AK++VA GL  +C VQV+YAIGV EP+SV VD+ GTGKI  K I +IV+E FD RP  +   LDL R     + KTAAYGHFGR+ P+FTWE
Sbjct:  260 GAHGGGAFSGKDPSKVDRSAAYMGRYVAKNLVAAGLCEKCEVQVAYAIGVAEPVSVMVDTAGTGKISSKRIAEIVREVFDLRPRAIIEQLDLLR---PIYRKTAAYGHFGRELPEFTWE 375          
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK_CHRVO (S-adenosylmethionine synthetase OS=Chromobacterium violaceum GN=metK PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.879e-35
Identity = 73/117 (62.39%), Postives = 92/117 (78.63%), Query Frame = -3
Query:  274 HGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 624
            HGGGAFSGKDP+KVDRS AY  R  AK+IVA GLAR+C +QVSYAIGV EP S+ VD++GT KIP+++I+++VK+ FD RP  +   LDL R   G   KTAAYGHFGR++P+F+WE
Sbjct:  262 HGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLARQCQIQVSYAIGVAEPTSIAVDTFGTNKIPNEKIVELVKKHFDLRPKGIIQMLDLLRPIYG---KTAAYGHFGREEPEFSWE 375          
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK_THIDA (S-adenosylmethionine synthetase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=metK PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.984e-35
Identity = 71/118 (60.17%), Postives = 92/118 (77.97%), Query Frame = -3
Query:  271 HGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEV 624
            HGGGAFSGKDP+KVDRS AY  R  AK+IVA GLA +C+VQVSYAIGV +P S+ VD++GTGKIP+ +I+++++  FD RP  +   LDL R     + +TA+YGHFGRD+P+FTWEV
Sbjct:  261 HGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLADKCMVQVSYAIGVAKPTSLMVDTFGTGKIPEAKIVELIQAHFDLRPKGIVNMLDLLR---PIYTRTASYGHFGRDEPEFTWEV 375          
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK_MAGSM (S-adenosylmethionine synthetase OS=Magnetococcus sp. (strain MC-1) GN=metK PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.984e-35
Identity = 71/119 (59.66%), Postives = 92/119 (77.31%), Query Frame = -3
Query:  274 GAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 630
            G+HGGGAFSGKDP+KVDRS AY+ R  AK+IVA GLA +C +QV+YAIGV +P+SV VD++GTGK+ D+ I ++VK+ FD RP  +   LDL R     + K+AAYGHFGR+ P+FTWE
Sbjct:  260 GSHGGGAFSGKDPSKVDRSSAYMGRYVAKNIVAAGLAEKCEIQVAYAIGVSQPMSVMVDTFGTGKLDDEAITELVKKHFDLRPKAIVQQLDLLR---PIYKKSAAYGHFGRELPEFTWE 375          
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK_TERTT (S-adenosylmethionine synthetase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=metK PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.532e-34
Identity = 74/118 (62.71%), Postives = 90/118 (76.27%), Query Frame = -3
Query:  271 HGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEV 624
            HGGGAFSGKDP+KVDRS AY  R  AK+IVA GLA RC +QVSYAIGV EP S+ V+++GTGKI D +I+++VKE FD RP  +   LDL R     + KTAAYGHFGR+ P+FTWE+
Sbjct:  259 HGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLADRCEIQVSYAIGVAEPTSISVNTFGTGKIDDGKIVELVKEHFDLRPRGLIEMLDLMR---PIYRKTAAYGHFGRELPEFTWEI 373          
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK_FERNB (S-adenosylmethionine synthetase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=metK PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.532e-34
Identity = 71/126 (56.35%), Postives = 95/126 (75.40%), Query Frame = -3
Query:  256 HGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE---VVKPLK 624
            HGGGAFSGKDPTKVDRS  Y  R  AK++VA GLA + ++QV+YAIGV  P+S+ ++++GT K+ ++++ K+V+E FDFRPG +   LDL R     + KTAAYGHFGR+DPDFTWE   +V+ LK
Sbjct:  269 HGGGAFSGKDPTKVDRSAHYFARYVAKNVVAAGLADKFMIQVAYAIGVARPVSIMINTFGTAKVDEEKLRKVVEEIFDFRPGAIIKKLDLLR---PIYRKTAAYGHFGRNDPDFTWERTDMVRELK 391          
BLAST of CV885279 vs. ExPASy Swiss-Prot
Match: METK_ACIF5 (S-adenosylmethionine synthetase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=metK PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.532e-34
Identity = 73/119 (61.34%), Postives = 90/119 (75.63%), Query Frame = -3
Query:  274 GAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 630
            G+HGGGAFSGKDP+KVDRS +Y  R  AK+IVA GLARRC VQV+YAIGV +P+S+ VD++GTG I D  I  +V+E FD RP  +   LDL R     + KTAAYGHFGR++P+FTWE
Sbjct:  259 GSHGGGAFSGKDPSKVDRSSSYAGRYVAKNIVAAGLARRCEVQVAYAIGVSQPVSLMVDTFGTGVIDDDRIAALVQEHFDLRPKGIIQMLDLLR---PIYAKTAAYGHFGREEPEFTWE 374          
The following BLAST results are available for this feature:
BLAST of CV885279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_GEOUR4.033e-3563.03S-adenosylmethionine synthetase OS=Geobacter urani... [more]
METK_DECAR4.033e-3561.54S-adenosylmethionine synthetase OS=Dechloromonas a... [more]
METK_PELCD5.267e-3558.82S-adenosylmethionine synthetase OS=Pelobacter carb... [more]
METK_GEOMG6.879e-3563.03S-adenosylmethionine synthetase OS=Geobacter metal... [more]
METK_CHRVO6.879e-3562.39S-adenosylmethionine synthetase OS=Chromobacterium... [more]
METK_THIDA8.984e-3560.17S-adenosylmethionine synthetase OS=Thiobacillus de... [more]
METK_MAGSM8.984e-3559.66S-adenosylmethionine synthetase OS=Magnetococcus s... [more]
METK_TERTT1.532e-3462.71S-adenosylmethionine synthetase OS=Teredinibacter ... [more]
METK_FERNB1.532e-3456.35S-adenosylmethionine synthetase OS=Fervidobacteriu... [more]
METK_ACIF51.532e-3461.34S-adenosylmethionine synthetase OS=Acidithiobacill... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_013G03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885279 ID=CV885279; Name=CV885279; organism=Citrus sinensis; type=EST; length=632bp
CTCAATCGATATCACTACACAACAGTGGTGACATGGTACATTAAACCAAA
ACCAAAAAAGAAGTGGGGAAAGAAGAAAAAGAAAGGAATTGAATGGGGAA
CATGTATGAGTTCTGAACACAGGAGATTTGCTTAGTATTACAAAGCAGCA
GCAAGATAATATTCAAATTATTCATCCACTACCAATAGAAGCAAACTTGA
ACAGCAGGGATAGTTTTCACTTTTCAACTCAAATTTAAGCTTGAGGCTTT
TCCCACTTGAGGGGCTTCACAACTTCCCAAGTGAAGTCTGGGTCATCCCT
GCCAAAGTGTCCATAGGCAGCAGTCTTCAAGAACCTGCCATTACCGCCCC
TTTTGAGATCCAAATTGATGGTCATCATTCCTGGCCTGAAATCAAAGCTT
TCCTTCACAATTTTGAGGATCTCCTTGTCAGGAATCTTGCCGGTTCCATA
TGAGTCCACAAAAACAGACAATGGCTCAGGCACACCAATGGCATAGGAGA
CTTGGACAATGCACCTGCGAGCAAGCCCGTTTGCAACAATGCTCTTAGCA
GCCTGCCTAACAATGTATGCACCACTCCTATCCACCTTAGTAGGGTCTTT
TCCAGAGAAAGCACCGCCACCATGGGCTCCCC
back to top