CV885273
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_PECCP (Bifunctional polymyxin resistance protein arnA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=arnA PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.886e-17 Identity = 65/226 (28.76%), Postives = 112/226 (49.56%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG--DPLIHPQPETYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845 R+L+ G GFIG+HL ++L+ +++ E+ D S D + +++G PRF + D++ E + + D I L A+PI Y NP++ + + L ++ R RI+ STSEVYG D + +T V PI R Y K++ + +++ Y ++G++ + R FN GPR++ I R ++ I + G P+ + G Q R F Sbjct: 323 RVLILGVNGFIGNHLTERLLRDDRYEIYGLDI----SSDAIARFLGDPRFHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYNKRIVFPSTSEVYGMCDDKEFDE-DTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKNGLRFTLFRPFNWMGPRLDTLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCF 543
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_ERWCT (Bifunctional polymyxin resistance protein arnA OS=Erwinia carotovora subsp. atroseptica GN=arnA PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.886e-17 Identity = 65/226 (28.76%), Postives = 112/226 (49.56%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG--DPLIHPQPETYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845 R+L+ G GFIG+HL ++L+ +++ E+ D S D + +++G PRF + D++ E + + D I L A+PI Y NP++ + + L ++ R RI+ STSEVYG D + +T V PI R Y K++ + +++ Y ++G++ + R FN GPR++ I R ++ I + G P+ + G Q R F Sbjct: 324 RVLILGVNGFIGNHLTERLLRDDRYEIYGLDI----SSDAIARFLGDPRFHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYNKRIVFPSTSEVYGMCDDKEFDE-DTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKNGLRFTLFRPFNWMGPRLDTLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCF 544
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_SERP5 (Bifunctional polymyxin resistance protein arnA OS=Serratia proteamaculans (strain 568) GN=arnA PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.097e-16 Identity = 61/227 (26.87%), Postives = 109/227 (48.02%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG----DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845 R+L+ G GFIG+HL ++L+ +++ ++ D GS D + +++G+PRF + D++ E + + D I L A+PI Y NP++ + + L ++ + RI+ STSEVYG G +N R Y K++ + +++ Y + G++ + R FN GPR++ I R ++ I + G P+ + G Q R F Sbjct: 317 RVLILGVNGFIGNHLTERLLRDDRYDIYGLD---IGS-DAISRFLGNPRFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIIFPSTSEVYGMCDDKEFDEDHSRLIVGPINK--QRWIYSVSKQLLDRVIWAYGAKEGLKFTLFRPFNWMGPRLDNLDAARIGSSRAITQLILNLVEGSPIKLMDGGAQKRCF 537
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_ESCF3 (Bifunctional polymyxin resistance protein arnA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=arnA PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.433e-16 Identity = 65/231 (28.14%), Postives = 107/231 (46.32%), Query Frame = 3 Query: 201 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLIHPQPETYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845 Q R+L+ G GFIG+HL ++L+ + EV D GS D + +++ HP F + D++ E + + D + L A+PI Y NP++ + + L ++ + RI+ STSEVYG D V PI R Y K++ + +++ Y + G+Q + R FN GPR++ I R ++ I + G P+ + G Q R F Sbjct: 313 QRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLTHPNFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVQYHKRIIFPSTSEVYGMCTDKFFDEDHSNL--IVGPINKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCF 537
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_ENT38 (Bifunctional polymyxin resistance protein arnA OS=Enterobacter sp. (strain 638) GN=arnA PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.444e-16 Identity = 65/231 (28.14%), Postives = 112/231 (48.48%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLIHPQPETYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYVS 857 R+L+ G GFIG+HL ++L++++ EV D GS D + ++IG+ RF + D++ E + + D + L A+PI Y NP++ + + L ++ + RI+ STSEVYG D + V PI R Y K++ + +++ Y + G++ + R FN GPR++ I R ++ I + G P+ + G Q R F +S Sbjct: 317 RVLILGVNGFIGNHLTERLLQDDNFEVYGLD---IGS-DAISRFIGNSRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYQKRIIFPSTSEVYGMCSDKVFDEDHSNL--IVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGRQKRCFTDIS 541
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_YERPY (Bifunctional polymyxin resistance protein arnA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=arnA PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.191e-16 Identity = 65/226 (28.76%), Postives = 113/226 (50.00%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG--DPLIHPQPETYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845 R+L+ G GFIG+HL ++L+++++ EV D GS D + +++G+P F + D++ E + + D I L A+PI Y NP++ + + L ++ + RI+ STSEVYG D + +T V PI R Y K++ + +++ Y + G++ + R FN GPR++ I R ++ I + G P+ + G Q R F Sbjct: 317 RVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDE-DTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLDNLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCF 537
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_YERPS (Bifunctional polymyxin resistance protein arnA OS=Yersinia pseudotuberculosis GN=arnA PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.191e-16 Identity = 65/226 (28.76%), Postives = 113/226 (50.00%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG--DPLIHPQPETYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845 R+L+ G GFIG+HL ++L+++++ EV D GS D + +++G+P F + D++ E + + D I L A+PI Y NP++ + + L ++ + RI+ STSEVYG D + +T V PI R Y K++ + +++ Y + G++ + R FN GPR++ I R ++ I + G P+ + G Q R F Sbjct: 317 RVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDE-DTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLDNLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCF 537
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_YERPP (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis (strain Pestoides F) GN=arnA PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.191e-16 Identity = 65/226 (28.76%), Postives = 113/226 (50.00%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG--DPLIHPQPETYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845 R+L+ G GFIG+HL ++L+++++ EV D GS D + +++G+P F + D++ E + + D I L A+PI Y NP++ + + L ++ + RI+ STSEVYG D + +T V PI R Y K++ + +++ Y + G++ + R FN GPR++ I R ++ I + G P+ + G Q R F Sbjct: 317 RVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDE-DTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLDNLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCF 537
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_YERPN (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=arnA PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.191e-16 Identity = 65/226 (28.76%), Postives = 113/226 (50.00%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG--DPLIHPQPETYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845 R+L+ G GFIG+HL ++L+++++ EV D GS D + +++G+P F + D++ E + + D I L A+PI Y NP++ + + L ++ + RI+ STSEVYG D + +T V PI R Y K++ + +++ Y + G++ + R FN GPR++ I R ++ I + G P+ + G Q R F Sbjct: 317 RVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDE-DTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLDNLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCF 537
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_YERPG (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=arnA PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.191e-16 Identity = 65/226 (28.76%), Postives = 113/226 (50.00%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG--DPLIHPQPETYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845 R+L+ G GFIG+HL ++L+++++ EV D GS D + +++G+P F + D++ E + + D I L A+PI Y NP++ + + L ++ + RI+ STSEVYG D + +T V PI R Y K++ + +++ Y + G++ + R FN GPR++ I R ++ I + G P+ + G Q R F Sbjct: 317 RVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDE-DTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLDNLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCF 537 The following BLAST results are available for this feature:
BLAST of CV885273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 109
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Sequences
The
following sequences are available for this feature:
EST sequence >CV885273 ID=CV885273; Name=CV885273; organism=Citrus sinensis; type=EST; length=857bpback to top |