CV885273

Overview
NameCV885273
Unique NameCV885273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: GALE_STRTR (UDP-glucose 4-epimerase OS=Streptococcus thermophilus GN=galE PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.357e-13
Identity = 58/191 (30.37%), Postives = 92/191 (48.17%), Query Frame = 3
Query:  210 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLI--------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTSTSEVYGDPLIHPQPETYWGN-VNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNI 752
            M ILV GGAG+IGSH+VD+L+E  + +V+V D+  TG +  +     HP     + D+++   +        +VD + H A  +        P+K    N  G + +L +    G + I+ +ST+  YG P   P  ET   N +NP      Y E K + ET+M    + +GI+    R FN  G  + +
Sbjct:    1 MAILVLGGAGYIGSHMVDRLVEKGQEKVVVVDSLVTGHRAAV-----HPDAIFYQGDLSDQDFMRKVFKENPDVDAVIHFAAYSLVGESMEKPLKYFDNNTAGMVKLLEVMNECGVKYIVFSSTAATYGIPEEIPILETTPQNPINP------YGESKLMMETIMKWSDQAYGIKYVPLRYFNVAGANLMV 180          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: RFBB_ECOLX (dTDP-glucose 4,6-dehydratase OS=Escherichia coli GN=rfbB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.609e-13
Identity = 67/239 (28.03%), Postives = 107/239 (44.77%), Query Frame = 3
Query:  210 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTEPL-------LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA----------KRVGARILLTSTSEVYGDPLIHPQP----ET--YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYV 854
            M+ILVTGGAGFIGS +V  ++ N ++ V+  D   + G+ ++L +     R+     D+ +           ++D + HLA  +        P   I+TN++GT  +L  A          K+   R    ST EVYGD L HP      ET   +         S Y   K  ++ L+  + R +G+   ++   N YGP    +  +++   I  AL G+ L +   G Q R + YV
Sbjct:    1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLAEISDSERYSFENADICDAEGDGLYFGQHQLDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSGLDDEKKKNFRFHHISTDEVYGD-LPHPDEVNSNETLQLFTETTAYAPSSPYSASKASSDHLVRAWKRTYGLPTIVSNCSNNYGPYHFPE--KLIPLVILNALEGKALPIYGKGDQIRDWLYV 236          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: TGDS_HUMAN (dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=TGDS PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.639e-12
Identity = 61/225 (27.11%), Postives = 97/225 (43.11%), Query Frame = 3
Query:  213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNY--FTGSKDNLKKWIGHPRFELIRHDVTE----PLLIE---VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYVS 857
            R+LVTGGAGFI SH++  L+E+  N +I+  +   +  S  NL+       ++ I+ D+ +     LL E   +D + H A             +    NV GT  ++  A      + +  ST EVYG  L     +  +   +P    + Y   K  AE  +  Y  Q+   + I R  N YGP    +  +V+  FI+         +   G QTR+F Y +
Sbjct:   19 RVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAHEARVEKFIYVSTDEVYGGSL-----DKEFDESSPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRSSNVYGPHQYPE--KVIPKFISLLQHNRKCCIHGSGLQTRNFLYAT 236          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: TGDS_BOVIN (dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TGDS PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.639e-12
Identity = 61/225 (27.11%), Postives = 97/225 (43.11%), Query Frame = 3
Query:  213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNY--FTGSKDNLKKWIGHPRFELIRHDVTE----PLLIE---VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYVS 857
            R+LVTGGAGFI SH++  L+E+  N +I+  +   +  S  NL+       ++ I+ D+ +     LL E   +D + H A             +    NV GT  ++  A      + +  ST EVYG  L     +  +   +P    + Y   K  AE  +  Y  Q+   + I R  N YGP    +  +V+  FI+         +   G QTR+F Y +
Sbjct:   19 RVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAHEARVEKFIYVSTDEVYGGSL-----DKEFDESSPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRSSNVYGPHQYPE--KVIPKFISLLQHNRKCCIHGTGLQTRNFLYAT 236          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: TGDS_MOUSE (dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=Tgds PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.796e-12
Identity = 63/225 (28.00%), Postives = 98/225 (43.56%), Query Frame = 3
Query:  213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNY--FTGSKDNLKKWIGHPRFELIRHDVTE----PLLIEVDQI---YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYVS 857
            R+LVTGGAGFI SH++  L+E+  + +IV  +   +  S  NL+       ++ I+ D+ +     LL EV++I    H A             +    NV GT  ++  A   G  + +  ST EVYG  L     E+     +P    + Y   K  AE  +  Y  ++   + I R  N YGP    +  RV+  FI+         +   G Q R+F Y +
Sbjct:   19 RVLVTGGAGFIASHVIVSLVEDYPDYMIVNLDKLDYCASLKNLEPVSNKQNYKFIQGDICDSHFVKLLFEVEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVNAAYEAGVEKFIYVSTDEVYGGSLDQEFDES-----SPKQPTNPYASSKAAAECFVQSYWERYKFPVVITRSSNVYGPHQYPE--RVIPKFISLLQHNRKCCIHGSGLQRRNFLYAA 236          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: RMLB_STRMU (dTDP-glucose 4,6-dehydratase OS=Streptococcus mutans GN=rmlB PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.796e-12
Identity = 62/197 (31.47%), Postives = 93/197 (47.21%), Query Frame = 3
Query:  216 ILVTGGAGFIGSHLVDKLMENEKN-EVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD-PLIHPQPE---------TYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNID 755
            I+VTGGAGFIGS+ V  +  N  +  V V D   + G++ NL++ +G  R EL+  D+ +  L++      D I H A  +       +P   I TN +GT  +L  A++   R    ST EVYGD PL    P          T     NP    S Y   K  ++ ++  + R  G++  I+   N YGP  +I+
Sbjct:    7 IIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNRANLEEILGD-RVELVVGDIADSELVDKLAAKADAIVHYAAESHNDNSLKDPSPFIYTNFVGTYILLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETKYNP---SSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIE 199          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_WIGBR (Bifunctional polymyxin resistance protein arnA OS=Wigglesworthia glossinidia brevipalpis GN=arnA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.769e-12
Identity = 61/228 (26.75%), Postives = 102/228 (44.74%), Query Frame = 3
Query:  213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNL-KKWIGHPRFELIRHDVTE------PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG----DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845
            +IL+ G  GFIG H+ + L++    ++     Y    K+NL K +IG+ +F  I+ D+ +        + + D I  L   A P+ Y  NP+K  K +    L ++    +   RI+  STSEVYG    D           G +     R  Y   K++ + +++ Y  ++ +   I R FN  GP ++        + RV +  I   + G P+T+   G Q R F
Sbjct:  316 KILILGVNGFIGYHITNLLLKYNNYKI-----YGIDIKNNLVKSFIGNEKFCFIKGDIKQYYNWVKKKIKKCDIILPLIAIARPMQYIKNPLKVFKIDFEENLKIIRYCVKYKKRIIFPSTSEVYGMCKDDYFDEENSNLVTGAIK--NQRWIYSSSKQLLDRIIWAYGVKNNLNFTIFRPFNWIGPGLDDFKIAEKQNARVTTQIIFNLINGLPVTIVNNGNQKRCF 536          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: VIPB_SALTI (Vi polysaccharide biosynthesis protein vipB/tviC OS=Salmonella typhi GN=vipB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.228e-12
Identity = 69/231 (29.87%), Postives = 104/231 (45.02%), Query Frame = 3
Query:  213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNL---------KKWIGHPRFELIRHDVT-----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDG--RVVSNFIAXALRGEPLTVQKPGTQTRSFCYV 854
            R L+TG AGFIGS L+++L+   +  VI  DN+ TG + NL         ++W    RF  I+ D+      +     VD + H A   S      +P+ T   N+ G LNML  A+    +     ++S  YGD    P+ E   G   P+   S Y   K V E     + R +       R FN +G R N +     V+  +I   L+ EP+ +   G+ +R FCY+
Sbjct:   17 RWLITGVAGFIGSGLLEELLFLNQT-VIGLDNFSTGYQHNLDDVRTSVSEEQW---SRFIFIQGDIRKFTDCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHPDLPKIEERIGR--PL---SPYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYI 238          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: RFBB_XANCB (dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv. campestris (strain B100) GN=rfbB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.388e-11
Identity = 64/231 (27.71%), Postives = 99/231 (42.86%), Query Frame = 3
Query:  219 LVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGL----------AKRVGARILLTSTSEVYGDPLIHPQPET-YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYVS 857
            LVTGGAGFIG + V + +      V +    + G+ + L    G+     ++ D+ +  L+       + D + + A  +        P   I+TNV+GTL +L             +R   R L  ST EVYG        ET  +    P    S Y   K  ++ L+  +H  +G+ +      N YGP    +  +++   IA AL GEPL V   G Q R + +VS
Sbjct:    5 LVTGGAGFIGGNFVLEAVSRGIRVVNLDALTYAGNLNTLASLEGNADHIFVKGDIGDGALVTRLLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPDTRRDAFRFLHVSTDEVYG-----TLGETGKFTETTPYAPNSPYSASKAASDHLVRAFHHTYGLPVLTTNCSNNYGPYHFPE--KLIPLVIAKALAGEPLPVYGDGKQVRDWLFVS 228          
The following BLAST results are available for this feature:
BLAST of CV885273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
GALE_STRTR7.357e-1330.37UDP-glucose 4-epimerase OS=Streptococcus thermophi... [more]
RFBB_ECOLX9.609e-1328.03dTDP-glucose 4,6-dehydratase OS=Escherichia coli G... [more]
TGDS_HUMAN1.639e-1227.11dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=... [more]
TGDS_BOVIN1.639e-1227.11dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TG... [more]
TGDS_MOUSE2.796e-1228.00dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=... [more]
RMLB_STRMU2.796e-1231.47dTDP-glucose 4,6-dehydratase OS=Streptococcus muta... [more]
ARNA_WIGBR4.769e-1226.75Bifunctional polymyxin resistance protein arnA OS=... [more]
VIPB_SALTI6.228e-1229.87Vi polysaccharide biosynthesis protein vipB/tviC O... [more]
RFBB_XANCB1.388e-1127.71dTDP-glucose 4,6-dehydratase OS=Xanthomonas campes... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013F12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885273 ID=CV885273; Name=CV885273; organism=Citrus sinensis; type=EST; length=857bp
TAAACTCTTAACGTTCCTGAATTATCGGTTCACTAATCACATTACTTCCT
CGTACTCCCCAAAACACTCACTCTCAACGCCGCTGCAAATAGGTATTGAA
TTTGATAATTGAGATCTGAACAATGGCTAATAATGGAGAGAATCAAACAA
CTACTAAGCCGCCACCATTGCCATCTCCATTGAGATTCTCCAAATTCTTT
CAGTCAAATATGAGAATTTTGGTGACTGGAGGAGCTGGATTCATTGGTTC
TCACCTTGTTGACAAATTGATGGAAAATGAGAAAAATGAGGTGATTGTCG
CTGATAACTACTTCACTGGCTCGAAGGACAATCTTAAGAAATGGATTGGT
CACCCAAGATTTGAGCTCATTCGTCATGATGTGACAGAGCCATTGTTGAT
CGAGGTTGATCAGATTTACCACCTTGCATGCCCTGCTTCTCCGATTTTCT
ACAAGTATAATCCTGTAAAGACAATTAAGACAAATGTGATTGGCACCCTA
AACATGCTAGGACTTGCTAAGCGAGTTGGAGCAAGGATTTTACTCACATC
AACTTCAGAGGTTTATGGTGATCCTCTTATTCACCCTCAACCTGAGACCT
ATTGGGGTAATGTCAATCCAATTGGGGTTCGTAGCTGCTATGATGAGGGA
AAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGACAGCATGGGAT
ACAAATCCGCATTGCTAGAATCTTTAACACTTATGGACCACGCATGAATA
TTGATGATGGGCGTGTGGTCAGCAATTTCATTGCTCANGCACTACGAGGT
GAACCTTTGACTGTCCAAAAGCCTGGAACACAAACTCGCAGTTTCTGTTA
TGTCTCT
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