CV885273
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: GALE_STRTR (UDP-glucose 4-epimerase OS=Streptococcus thermophilus GN=galE PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 7.357e-13 Identity = 58/191 (30.37%), Postives = 92/191 (48.17%), Query Frame = 3 Query: 210 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLI--------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTSTSEVYGDPLIHPQPETYWGN-VNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNI 752 M ILV GGAG+IGSH+VD+L+E + +V+V D+ TG + + HP + D+++ + +VD + H A + P+K N G + +L + G + I+ +ST+ YG P P ET N +NP Y E K + ET+M + +GI+ R FN G + + Sbjct: 1 MAILVLGGAGYIGSHMVDRLVEKGQEKVVVVDSLVTGHRAAV-----HPDAIFYQGDLSDQDFMRKVFKENPDVDAVIHFAAYSLVGESMEKPLKYFDNNTAGMVKLLEVMNECGVKYIVFSSTAATYGIPEEIPILETTPQNPINP------YGESKLMMETIMKWSDQAYGIKYVPLRYFNVAGANLMV 180
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: RFBB_ECOLX (dTDP-glucose 4,6-dehydratase OS=Escherichia coli GN=rfbB PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 9.609e-13 Identity = 67/239 (28.03%), Postives = 107/239 (44.77%), Query Frame = 3 Query: 210 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTEPL-------LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA----------KRVGARILLTSTSEVYGDPLIHPQP----ET--YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYV 854 M+ILVTGGAGFIGS +V ++ N ++ V+ D + G+ ++L + R+ D+ + ++D + HLA + P I+TN++GT +L A K+ R ST EVYGD L HP ET + S Y K ++ L+ + R +G+ ++ N YGP + +++ I AL G+ L + G Q R + YV Sbjct: 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLAEISDSERYSFENADICDAEGDGLYFGQHQLDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSGLDDEKKKNFRFHHISTDEVYGD-LPHPDEVNSNETLQLFTETTAYAPSSPYSASKASSDHLVRAWKRTYGLPTIVSNCSNNYGPYHFPE--KLIPLVILNALEGKALPIYGKGDQIRDWLYV 236
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: TGDS_HUMAN (dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=TGDS PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.639e-12 Identity = 61/225 (27.11%), Postives = 97/225 (43.11%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNY--FTGSKDNLKKWIGHPRFELIRHDVTE----PLLIE---VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYVS 857 R+LVTGGAGFI SH++ L+E+ N +I+ + + S NL+ ++ I+ D+ + LL E +D + H A + NV GT ++ A + + ST EVYG L + + +P + Y K AE + Y Q+ + I R N YGP + +V+ FI+ + G QTR+F Y + Sbjct: 19 RVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAHEARVEKFIYVSTDEVYGGSL-----DKEFDESSPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRSSNVYGPHQYPE--KVIPKFISLLQHNRKCCIHGSGLQTRNFLYAT 236
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: TGDS_BOVIN (dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TGDS PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.639e-12 Identity = 61/225 (27.11%), Postives = 97/225 (43.11%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNY--FTGSKDNLKKWIGHPRFELIRHDVTE----PLLIE---VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYVS 857 R+LVTGGAGFI SH++ L+E+ N +I+ + + S NL+ ++ I+ D+ + LL E +D + H A + NV GT ++ A + + ST EVYG L + + +P + Y K AE + Y Q+ + I R N YGP + +V+ FI+ + G QTR+F Y + Sbjct: 19 RVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAHEARVEKFIYVSTDEVYGGSL-----DKEFDESSPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRSSNVYGPHQYPE--KVIPKFISLLQHNRKCCIHGTGLQTRNFLYAT 236
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: TGDS_MOUSE (dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=Tgds PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.796e-12 Identity = 63/225 (28.00%), Postives = 98/225 (43.56%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNY--FTGSKDNLKKWIGHPRFELIRHDVTE----PLLIEVDQI---YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYVS 857 R+LVTGGAGFI SH++ L+E+ + +IV + + S NL+ ++ I+ D+ + LL EV++I H A + NV GT ++ A G + + ST EVYG L E+ +P + Y K AE + Y ++ + I R N YGP + RV+ FI+ + G Q R+F Y + Sbjct: 19 RVLVTGGAGFIASHVIVSLVEDYPDYMIVNLDKLDYCASLKNLEPVSNKQNYKFIQGDICDSHFVKLLFEVEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVNAAYEAGVEKFIYVSTDEVYGGSLDQEFDES-----SPKQPTNPYASSKAAAECFVQSYWERYKFPVVITRSSNVYGPHQYPE--RVIPKFISLLQHNRKCCIHGSGLQRRNFLYAA 236
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: RMLB_STRMU (dTDP-glucose 4,6-dehydratase OS=Streptococcus mutans GN=rmlB PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.796e-12 Identity = 62/197 (31.47%), Postives = 93/197 (47.21%), Query Frame = 3 Query: 216 ILVTGGAGFIGSHLVDKLMENEKN-EVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD-PLIHPQPE---------TYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNID 755 I+VTGGAGFIGS+ V + N + V V D + G++ NL++ +G R EL+ D+ + L++ D I H A + +P I TN +GT +L A++ R ST EVYGD PL P T NP S Y K ++ ++ + R G++ I+ N YGP +I+ Sbjct: 7 IIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNRANLEEILGD-RVELVVGDIADSELVDKLAAKADAIVHYAAESHNDNSLKDPSPFIYTNFVGTYILLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETKYNP---SSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIE 199
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_WIGBR (Bifunctional polymyxin resistance protein arnA OS=Wigglesworthia glossinidia brevipalpis GN=arnA PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.769e-12 Identity = 61/228 (26.75%), Postives = 102/228 (44.74%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNL-KKWIGHPRFELIRHDVTE------PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG----DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845 +IL+ G GFIG H+ + L++ ++ Y K+NL K +IG+ +F I+ D+ + + + D I L A P+ Y NP+K K + L ++ + RI+ STSEVYG D G + R Y K++ + +++ Y ++ + I R FN GP ++ + RV + I + G P+T+ G Q R F Sbjct: 316 KILILGVNGFIGYHITNLLLKYNNYKI-----YGIDIKNNLVKSFIGNEKFCFIKGDIKQYYNWVKKKIKKCDIILPLIAIARPMQYIKNPLKVFKIDFEENLKIIRYCVKYKKRIIFPSTSEVYGMCKDDYFDEENSNLVTGAIK--NQRWIYSSSKQLLDRIIWAYGVKNNLNFTIFRPFNWIGPGLDDFKIAEKQNARVTTQIIFNLINGLPVTIVNNGNQKRCF 536
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: VIPB_SALTI (Vi polysaccharide biosynthesis protein vipB/tviC OS=Salmonella typhi GN=vipB PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 6.228e-12 Identity = 69/231 (29.87%), Postives = 104/231 (45.02%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNL---------KKWIGHPRFELIRHDVT-----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDG--RVVSNFIAXALRGEPLTVQKPGTQTRSFCYV 854 R L+TG AGFIGS L+++L+ + VI DN+ TG + NL ++W RF I+ D+ + VD + H A S +P+ T N+ G LNML A+ + ++S YGD P+ E G P+ S Y K V E + R + R FN +G R N + V+ +I L+ EP+ + G+ +R FCY+ Sbjct: 17 RWLITGVAGFIGSGLLEELLFLNQT-VIGLDNFSTGYQHNLDDVRTSVSEEQW---SRFIFIQGDIRKFTDCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHPDLPKIEERIGR--PL---SPYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYI 238
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: RFBB_XANCB (dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv. campestris (strain B100) GN=rfbB PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.388e-11 Identity = 64/231 (27.71%), Postives = 99/231 (42.86%), Query Frame = 3 Query: 219 LVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGL----------AKRVGARILLTSTSEVYGDPLIHPQPET-YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYVS 857 LVTGGAGFIG + V + + V + + G+ + L G+ ++ D+ + L+ + D + + A + P I+TNV+GTL +L +R R L ST EVYG ET + P S Y K ++ L+ +H +G+ + N YGP + +++ IA AL GEPL V G Q R + +VS Sbjct: 5 LVTGGAGFIGGNFVLEAVSRGIRVVNLDALTYAGNLNTLASLEGNADHIFVKGDIGDGALVTRLLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPDTRRDAFRFLHVSTDEVYG-----TLGETGKFTETTPYAPNSPYSASKAASDHLVRAFHHTYGLPVLTTNCSNNYGPYHFPE--KLIPLVIAKALAGEPLPVYGDGKQVRDWLFVS 228 The following BLAST results are available for this feature:
BLAST of CV885273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 109
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Sequences
The
following sequences are available for this feature:
EST sequence >CV885273 ID=CV885273; Name=CV885273; organism=Citrus sinensis; type=EST; length=857bpback to top |