CV885273

Overview
NameCV885273
Unique NameCV885273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_SALPB (Bifunctional polymyxin resistance protein arnA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=arnA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.285e-16
Identity = 62/228 (27.19%), Postives = 108/228 (47.37%), Query Frame = 3 
Query:  210 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG----DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845
            +R+L+ G  GFIG+HL ++L+  E  EV   D    GS + + +++ HPRF  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   R++  STSEVYG          +     G VN    R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F
Sbjct:  316 IRVLILGVNGFIGNHLTERLLNEENYEVYGMD---IGS-NAISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCF 537
[Close]
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_SALNS (Bifunctional polymyxin resistance protein arnA OS=Salmonella newport (strain SL254) GN=arnA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.285e-16
Identity = 62/228 (27.19%), Postives = 108/228 (47.37%), Query Frame = 3 
Query:  210 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG----DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845
            +R+L+ G  GFIG+HL ++L+  E  EV   D    GS + + +++ HPRF  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   R++  STSEVYG          +     G VN    R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F
Sbjct:  316 IRVLILGVNGFIGNHLTERLLNEENYEVYGMD---IGS-NAISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCF 537
[Close]
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_SALHS (Bifunctional polymyxin resistance protein arnA OS=Salmonella heidelberg (strain SL476) GN=arnA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.285e-16
Identity = 62/228 (27.19%), Postives = 108/228 (47.37%), Query Frame = 3 
Query:  210 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG----DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845
            +R+L+ G  GFIG+HL ++L+  E  EV   D    GS + + +++ HPRF  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   R++  STSEVYG          +     G VN    R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F
Sbjct:  316 IRVLILGVNGFIGNHLTERLLNEENYEVYGMD---IGS-NAISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCF 537
[Close]
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_SALG2 (Bifunctional polymyxin resistance protein arnA OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=arnA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.285e-16
Identity = 62/228 (27.19%), Postives = 108/228 (47.37%), Query Frame = 3 
Query:  210 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG----DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845
            +R+L+ G  GFIG+HL ++L+  E  EV   D    GS + + +++ HPRF  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   R++  STSEVYG          +     G VN    R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F
Sbjct:  316 IRVLILGVNGFIGNHLTERLLNEENYEVYGMD---IGS-NAISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILSLVEGTPIKLIDGGQQKRCF 537
[Close]
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_SALEP (Bifunctional polymyxin resistance protein arnA OS=Salmonella enteritidis PT4 (strain P125109) GN=arnA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.285e-16
Identity = 62/228 (27.19%), Postives = 108/228 (47.37%), Query Frame = 3 
Query:  210 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG----DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845
            +R+L+ G  GFIG+HL ++L+  E  EV   D    GS + + +++ HPRF  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   R++  STSEVYG          +     G VN    R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F
Sbjct:  316 IRVLILGVNGFIGNHLTERLLNEENYEVYGMD---IGS-NAISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCF 537
[Close]
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_SALDC (Bifunctional polymyxin resistance protein arnA OS=Salmonella dublin (strain CT_02021853) GN=arnA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.285e-16
Identity = 62/228 (27.19%), Postives = 108/228 (47.37%), Query Frame = 3 
Query:  210 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG----DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845
            +R+L+ G  GFIG+HL ++L+  E  EV   D    GS + + +++ HPRF  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   R++  STSEVYG          +     G VN    R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F
Sbjct:  316 IRVLILGVNGFIGNHLTERLLNEENYEVYGMD---IGS-NAISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCF 537
[Close]
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_SALCH (Bifunctional polymyxin resistance protein arnA OS=Salmonella choleraesuis GN=arnA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.285e-16
Identity = 62/228 (27.19%), Postives = 108/228 (47.37%), Query Frame = 3 
Query:  210 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG----DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845
            +R+L+ G  GFIG+HL ++L+  E  EV   D    GS + + +++ HPRF  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   R++  STSEVYG          +     G VN    R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F
Sbjct:  316 IRVLILGVNGFIGNHLTERLLNEENYEVYGMD---IGS-NAISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLSAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCF 537
[Close]
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_SALA4 (Bifunctional polymyxin resistance protein arnA OS=Salmonella agona (strain SL483) GN=arnA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.285e-16
Identity = 62/228 (27.19%), Postives = 108/228 (47.37%), Query Frame = 3 
Query:  210 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG----DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845
            +R+L+ G  GFIG+HL ++L+  E  EV   D    GS + + +++ HPRF  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   R++  STSEVYG          +     G VN    R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F
Sbjct:  316 IRVLILGVNGFIGNHLTERLLNEENYEVYGMD---IGS-NAISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCF 537
[Close]
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP7 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=arnA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.285e-16
Identity = 61/231 (26.41%), Postives = 111/231 (48.05%), Query Frame = 3 
Query:  213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG----DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYVS 857
            R+L+ G  GFIG+HL ++L++++  E+   D    GS D + +++  PRF  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG                G +N    R  Y   K++ + +++ Y  ++G++  + R FN  GPR++      I   R ++  I   + G P+ + + G Q R F  +S
Sbjct:  317 RVLILGVNGFIGNHLTERLLQDDNYEIYGLD---IGS-DAISRFLDCPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYNKRIIFPSTSEVYGMCTDKNFDEDSSNLVVGPINK--QRWIYSVSKQLLDRVIWAYGDKNGLKFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIEGGKQKRCFTDIS 541
[Close]
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_ERWT9 (Bifunctional polymyxin resistance protein arnA OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=arnA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.285e-16
Identity = 65/227 (28.63%), Postives = 108/227 (47.58%), Query Frame = 3 
Query:  213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLIHPQPETYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845
            R+L+ G  GFIG+HL ++L+ ++  EV   D    GS D + ++IGH RF  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG   D             V PI   R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F
Sbjct:  317 RVLILGVNGFIGNHLTERLLVDDNFEVFGLD---IGS-DAIGRFIGHERFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYKKRIIFPSTSEVYGMCTDASFDEDSSNL--VVGPINKQRWIYSVSKQLLDRVIWAYGDKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGRQKRCF 537
The following BLAST results are available for this feature:
BLAST of CV885273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
ARNA_SALPB9.285e-1627.19Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALNS9.285e-1627.19Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALHS9.285e-1627.19Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALG29.285e-1627.19Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALEP9.285e-1627.19Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALDC9.285e-1627.19Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALCH9.285e-1627.19Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALA49.285e-1627.19Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_KLEP79.285e-1626.41Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ERWT99.285e-1628.63Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013F12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885273 ID=CV885273; Name=CV885273; organism=Citrus sinensis; type=EST; length=857bp
TAAACTCTTAACGTTCCTGAATTATCGGTTCACTAATCACATTACTTCCT
CGTACTCCCCAAAACACTCACTCTCAACGCCGCTGCAAATAGGTATTGAA
TTTGATAATTGAGATCTGAACAATGGCTAATAATGGAGAGAATCAAACAA
CTACTAAGCCGCCACCATTGCCATCTCCATTGAGATTCTCCAAATTCTTT
CAGTCAAATATGAGAATTTTGGTGACTGGAGGAGCTGGATTCATTGGTTC
TCACCTTGTTGACAAATTGATGGAAAATGAGAAAAATGAGGTGATTGTCG
CTGATAACTACTTCACTGGCTCGAAGGACAATCTTAAGAAATGGATTGGT
CACCCAAGATTTGAGCTCATTCGTCATGATGTGACAGAGCCATTGTTGAT
CGAGGTTGATCAGATTTACCACCTTGCATGCCCTGCTTCTCCGATTTTCT
ACAAGTATAATCCTGTAAAGACAATTAAGACAAATGTGATTGGCACCCTA
AACATGCTAGGACTTGCTAAGCGAGTTGGAGCAAGGATTTTACTCACATC
AACTTCAGAGGTTTATGGTGATCCTCTTATTCACCCTCAACCTGAGACCT
ATTGGGGTAATGTCAATCCAATTGGGGTTCGTAGCTGCTATGATGAGGGA
AAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGACAGCATGGGAT
ACAAATCCGCATTGCTAGAATCTTTAACACTTATGGACCACGCATGAATA
TTGATGATGGGCGTGTGGTCAGCAATTTCATTGCTCANGCACTACGAGGT
GAACCTTTGACTGTCCAAAAGCCTGGAACACAAACTCGCAGTTTCTGTTA
TGTCTCT
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