CV885273
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_ECOL5 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=arnA PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 9.285e-16 Identity = 63/227 (27.75%), Postives = 105/227 (46.26%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG----DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845 R+L+ G GFIG+HL ++L+ + EV D GS D + +++ HP F + D++ E + + D + L A+PI Y NP++ + + L ++ + RI+ STSEVYG G VN R Y K++ + +++ Y + G+Q + R FN GPR++ I R ++ I + G P+ + G Q R F Sbjct: 317 RVLILGVNGFIGNHLTERLLCEDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCF 537
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.069e-15 Identity = 65/225 (28.89%), Postives = 104/225 (46.22%), Query Frame = 3 Query: 216 ILVTGGAGFIGSHLVDKLMENEKN-EVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARILLTSTSEVYGDPLIHPQPETYWGN--VNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCY 851 IL+TG AGFI SH+ ++L+ + + +++V D + + NL P F+ ++ D+ L+ E+D I H A N + K N+ GT +L K G R + ST EVYG+ + GN + + + Y K AE L+ Y R +G+ + R N YGP N +++ FI A+ G+PL + G+ RS+ Y Sbjct: 9 ILITGAAGFIASHVANRLVRSYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEEIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGE----TDEDASVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGP--NQFPEKLIPKFILLAMNGKPLPIHGDGSNVRSYLY 227
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.069e-15 Identity = 65/225 (28.89%), Postives = 102/225 (45.33%), Query Frame = 3 Query: 216 ILVTGGAGFIGSHLVDKLMENEKN-EVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARILLTSTSEVYGDPLIHPQPETYWGN--VNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCY 851 IL+TG AGFI SH+ ++L+ N + +++V D + NL P F+ ++ D+ L+ +D I H A N + K N+ GT +L K G R + ST EVYG+ + GN + + + Y K AE L+ Y R +G+ + R N YGP N +++ FI A+ G+PL + G+ RS+ Y Sbjct: 11 ILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSDLKNLDPSFSSPNFKFVKGDIASDDLVNYLLITENIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGE----TDEDAAVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGP--NQFPEKMIPKFILLAMSGKPLPIHGDGSNVRSYLY 229
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_SHIFL (Bifunctional polymyxin resistance protein arnA OS=Shigella flexneri GN=arnA PE=3 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 2.069e-15 Identity = 62/227 (27.31%), Postives = 104/227 (45.81%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG----DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845 R+L+ G GFIG+HL ++L+ + EV D GS D + +++ HP F + D++ E + + D + L A+PI Y NP++ + + L ++ + RI+ STSEVYG G VN R Y K++ + +++ Y + G+Q + FN GPR++ I R ++ I + G P+ + G Q R F Sbjct: 317 RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLQFTLFLPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCF 537
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_SHIF8 (Bifunctional polymyxin resistance protein arnA OS=Shigella flexneri serotype 5b (strain 8401) GN=arnA PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.069e-15 Identity = 62/227 (27.31%), Postives = 104/227 (45.81%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG----DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845 R+L+ G GFIG+HL ++L+ + EV D GS D + +++ HP F + D++ E + + D + L A+PI Y NP++ + + L ++ + RI+ STSEVYG G VN R Y K++ + +++ Y + G+Q + FN GPR++ I R ++ I + G P+ + G Q R F Sbjct: 317 RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLQFTLFLPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCF 537
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP3 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae (strain 342) GN=arnA PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.528e-15 Identity = 62/229 (27.07%), Postives = 113/229 (49.34%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPL-IHPQPETYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYVS 857 R+L+ G GFIG+HL ++L++++ E+ D GS D + +++ PRF + D++ E + + D + L A+PI Y NP++ + + L ++ + RI+ STSEVYG + +T V PI R Y K++ + +++ Y ++ ++ + R FN GPR++ I R ++ I + G P+ + + G Q R F +S Sbjct: 317 RVLILGVNGFIGNHLTERLLQDDNYEIYGLD---IGS-DAISRFLESPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYNKRIIFPSTSEVYGMCTDKNFDEDTSNLVVGPINKQRWIYSVSKQLLDRVIWAYGDKYDLKFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIEGGKQKRCFTDIS 541
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_PHOLL (Bifunctional polymyxin resistance protein arnA OS=Photorhabdus luminescens subsp. laumondii GN=arnA PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.608e-15 Identity = 62/226 (27.43%), Postives = 109/226 (48.23%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG--DPLIHPQPETYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845 R+L+ G GFIG+HL ++L+ + ++ D GS ++++I +PRF I D+ E + + D + L A+PI Y NP++ + + L ++ + RI+ STSEVYG D + ++ V PI R Y K++ + +++ Y + G++ + R FN GPR++ I R ++ I + G P+ + G Q R F Sbjct: 317 RVLILGVNGFIGNHLTERLLRDGNYDIYGMD---IGSSA-IERFISNPRFHFIEGDINIHTEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRIIFPSTSEVYGMCDDKEFDEDDSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLKFTLFRPFNWMGPRLDNLNSARIGSSRAITQLILNLVEGSPIKLVDGGEQKRCF 537
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 7.861e-15 Identity = 66/227 (29.07%), Postives = 102/227 (44.93%), Query Frame = 3 Query: 216 ILVTGGAGFIGSHLVDKLMENEKN-EVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARILLTSTSEVYG----DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCY 851 IL+TG AGFI SH+ ++L+ + + +++V D + + NL P F+ ++ D+ L+ +D I H A N + K N+ GT +L K G R + ST EVYG D L+ + NP Y K AE L+ Y R +G+ + R N YGP N +++ FI A+RG+ L + G+ RS+ Y Sbjct: 9 ILITGAAGFIASHVANRLIRSYPDYKIVVLDKLDYCSNLKNLNPSKHSPNFKFVKGDIASADLVNHLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDALVGNHEASQLLPTNP------YSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGP--NQFPEKLIPKFILLAMRGQVLPIHGDGSNVRSYLY 227
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: RFFG_HAEIN (dTDP-glucose 4,6-dehydratase OS=Haemophilus influenzae GN=rffG PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.341e-14 Identity = 63/233 (27.04%), Postives = 110/233 (47.21%), Query Frame = 3 Query: 210 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGL----------AKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYV 854 M ILVTGG+GFIGS L+ ++ + ++ VI D + ++ L++ +PR+ + D+ + +IE D + HLA + ++TN++GT +L + AK+ R ST EVYGD + E + +P S Y K + L+ +HR +G+ + I N YG + + +++ I+ A+ G+PL + G Q R + +V Sbjct: 2 MNILVTGGSGFIGSALIRYIINHTQDFVINIDKLTYAANQSALREVENNPRYVFEKVDICDLNVIENIFEKYQPDAVMHLAAESHVDRSISGAADFVQTNIVGTYTLLEVAKNYWHTLDEAKKTTFRFHHISTDEVYGDLSL---SEPAFTEQSPYHPSSPYSASKAASNHLVQAWHRTYGLPVIITNSSNNYGAYQHAE--KLIPLMISNAVMGKPLPIYGDGQQIRDWLFV 229
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_SODGM (Bifunctional polymyxin resistance protein arnA OS=Sodalis glossinidius (strain morsitans) GN=arnA PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.341e-14 Identity = 60/231 (25.97%), Postives = 108/231 (46.75%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLIHPQPETYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYVS 857 R+L+ G GFIG+HL ++L+ + E+ D D + +++ +P F + D++ E + + D + L A+PI Y NP++ + + L ++ + RI+ STSEVYG DP+ + V PI R Y K++ + +++ Y + G++ + R FN GPR++ I R ++ I + G + + G Q R F +S Sbjct: 317 RVLILGVNGFIGNHLTERLLRDGNYEIYGLDI----GTDAISRFMVNPLFHFVEGDISIHSEWIEYHIKKCDIVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRHCVKYQKRIIFPSTSEVYGMCTDPVFDEDDSSL--IVGPINKQRWIYSVSKQLLDRVLWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSHIKLVDGGAQKRCFTDIS 541 The following BLAST results are available for this feature:
BLAST of CV885273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 109
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Sequences
The
following sequences are available for this feature:
EST sequence >CV885273 ID=CV885273; Name=CV885273; organism=Citrus sinensis; type=EST; length=857bpback to top |