CV885273

Overview
NameCV885273
Unique NameCV885273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_ECOL5 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.285e-16
Identity = 63/227 (27.75%), Postives = 105/227 (46.26%), Query Frame = 3
Query:  213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG----DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845
            R+L+ G  GFIG+HL ++L+  +  EV   D    GS D + +++ HP F  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG                G VN    R  Y   K++ + +++ Y  + G+Q  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F
Sbjct:  317 RVLILGVNGFIGNHLTERLLCEDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCF 537          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.069e-15
Identity = 65/225 (28.89%), Postives = 104/225 (46.22%), Query Frame = 3
Query:  216 ILVTGGAGFIGSHLVDKLMENEKN-EVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARILLTSTSEVYGDPLIHPQPETYWGN--VNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCY 851
            IL+TG AGFI SH+ ++L+ +  + +++V D   +  +  NL      P F+ ++ D+    L+       E+D I H A          N  +  K N+ GT  +L   K  G   R +  ST EVYG+       +   GN   + +   + Y   K  AE L+  Y R +G+ +   R  N YGP  N    +++  FI  A+ G+PL +   G+  RS+ Y
Sbjct:    9 ILITGAAGFIASHVANRLVRSYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEEIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGE----TDEDASVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGP--NQFPEKLIPKFILLAMNGKPLPIHGDGSNVRSYLY 227          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.069e-15
Identity = 65/225 (28.89%), Postives = 102/225 (45.33%), Query Frame = 3
Query:  216 ILVTGGAGFIGSHLVDKLMENEKN-EVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARILLTSTSEVYGDPLIHPQPETYWGN--VNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCY 851
            IL+TG AGFI SH+ ++L+ N  + +++V D   +     NL      P F+ ++ D+    L+        +D I H A          N  +  K N+ GT  +L   K  G   R +  ST EVYG+       +   GN   + +   + Y   K  AE L+  Y R +G+ +   R  N YGP  N    +++  FI  A+ G+PL +   G+  RS+ Y
Sbjct:   11 ILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSDLKNLDPSFSSPNFKFVKGDIASDDLVNYLLITENIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGE----TDEDAAVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGP--NQFPEKMIPKFILLAMSGKPLPIHGDGSNVRSYLY 229          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_SHIFL (Bifunctional polymyxin resistance protein arnA OS=Shigella flexneri GN=arnA PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.069e-15
Identity = 62/227 (27.31%), Postives = 104/227 (45.81%), Query Frame = 3
Query:  213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG----DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845
            R+L+ G  GFIG+HL ++L+  +  EV   D    GS D + +++ HP F  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG                G VN    R  Y   K++ + +++ Y  + G+Q  +   FN  GPR++      I   R ++  I   + G P+ +   G Q R F
Sbjct:  317 RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLQFTLFLPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCF 537          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_SHIF8 (Bifunctional polymyxin resistance protein arnA OS=Shigella flexneri serotype 5b (strain 8401) GN=arnA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.069e-15
Identity = 62/227 (27.31%), Postives = 104/227 (45.81%), Query Frame = 3
Query:  213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG----DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845
            R+L+ G  GFIG+HL ++L+  +  EV   D    GS D + +++ HP F  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG                G VN    R  Y   K++ + +++ Y  + G+Q  +   FN  GPR++      I   R ++  I   + G P+ +   G Q R F
Sbjct:  317 RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLQFTLFLPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCF 537          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP3 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae (strain 342) GN=arnA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.528e-15
Identity = 62/229 (27.07%), Postives = 113/229 (49.34%), Query Frame = 3
Query:  213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPL-IHPQPETYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYVS 857
            R+L+ G  GFIG+HL ++L++++  E+   D    GS D + +++  PRF  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG     +   +T    V PI   R  Y   K++ + +++ Y  ++ ++  + R FN  GPR++      I   R ++  I   + G P+ + + G Q R F  +S
Sbjct:  317 RVLILGVNGFIGNHLTERLLQDDNYEIYGLD---IGS-DAISRFLESPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYNKRIIFPSTSEVYGMCTDKNFDEDTSNLVVGPINKQRWIYSVSKQLLDRVIWAYGDKYDLKFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIEGGKQKRCFTDIS 541          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_PHOLL (Bifunctional polymyxin resistance protein arnA OS=Photorhabdus luminescens subsp. laumondii GN=arnA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.608e-15
Identity = 62/226 (27.43%), Postives = 109/226 (48.23%), Query Frame = 3
Query:  213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG--DPLIHPQPETYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845
            R+L+ G  GFIG+HL ++L+ +   ++   D    GS   ++++I +PRF  I  D+       E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG  D     + ++    V PI   R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F
Sbjct:  317 RVLILGVNGFIGNHLTERLLRDGNYDIYGMD---IGSSA-IERFISNPRFHFIEGDINIHTEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRIIFPSTSEVYGMCDDKEFDEDDSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLKFTLFRPFNWMGPRLDNLNSARIGSSRAITQLILNLVEGSPIKLVDGGEQKRCF 537          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.861e-15
Identity = 66/227 (29.07%), Postives = 102/227 (44.93%), Query Frame = 3
Query:  216 ILVTGGAGFIGSHLVDKLMENEKN-EVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARILLTSTSEVYG----DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCY 851
            IL+TG AGFI SH+ ++L+ +  + +++V D   +  +  NL      P F+ ++ D+    L+        +D I H A          N  +  K N+ GT  +L   K  G   R +  ST EVYG    D L+     +     NP      Y   K  AE L+  Y R +G+ +   R  N YGP  N    +++  FI  A+RG+ L +   G+  RS+ Y
Sbjct:    9 ILITGAAGFIASHVANRLIRSYPDYKIVVLDKLDYCSNLKNLNPSKHSPNFKFVKGDIASADLVNHLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDALVGNHEASQLLPTNP------YSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGP--NQFPEKLIPKFILLAMRGQVLPIHGDGSNVRSYLY 227          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: RFFG_HAEIN (dTDP-glucose 4,6-dehydratase OS=Haemophilus influenzae GN=rffG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.341e-14
Identity = 63/233 (27.04%), Postives = 110/233 (47.21%), Query Frame = 3
Query:  210 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGL----------AKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYV 854
            M ILVTGG+GFIGS L+  ++ + ++ VI  D   +  ++  L++   +PR+   + D+ +  +IE        D + HLA  +            ++TN++GT  +L +          AK+   R    ST EVYGD  +    E  +   +P    S Y   K  +  L+  +HR +G+ + I    N YG   + +  +++   I+ A+ G+PL +   G Q R + +V
Sbjct:    2 MNILVTGGSGFIGSALIRYIINHTQDFVINIDKLTYAANQSALREVENNPRYVFEKVDICDLNVIENIFEKYQPDAVMHLAAESHVDRSISGAADFVQTNIVGTYTLLEVAKNYWHTLDEAKKTTFRFHHISTDEVYGDLSL---SEPAFTEQSPYHPSSPYSASKAASNHLVQAWHRTYGLPVIITNSSNNYGAYQHAE--KLIPLMISNAVMGKPLPIYGDGQQIRDWLFV 229          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_SODGM (Bifunctional polymyxin resistance protein arnA OS=Sodalis glossinidius (strain morsitans) GN=arnA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.341e-14
Identity = 60/231 (25.97%), Postives = 108/231 (46.75%), Query Frame = 3
Query:  213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLIHPQPETYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYVS 857
            R+L+ G  GFIG+HL ++L+ +   E+   D       D + +++ +P F  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG   DP+      +    V PI   R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G  + +   G Q R F  +S
Sbjct:  317 RVLILGVNGFIGNHLTERLLRDGNYEIYGLDI----GTDAISRFMVNPLFHFVEGDISIHSEWIEYHIKKCDIVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRHCVKYQKRIIFPSTSEVYGMCTDPVFDEDDSSL--IVGPINKQRWIYSVSKQLLDRVLWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSHIKLVDGGAQKRCFTDIS 541          
The following BLAST results are available for this feature:
BLAST of CV885273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
ARNA_ECOL59.285e-1627.75Bifunctional polymyxin resistance protein arnA OS=... [more]
RHM3_ARATH2.069e-1528.89Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
RHM2_ARATH2.069e-1528.89Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]
ARNA_SHIFL2.069e-1527.31Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SHIF82.069e-1527.31Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_KLEP33.528e-1527.07Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PHOLL4.608e-1527.43Bifunctional polymyxin resistance protein arnA OS=... [more]
RHM1_ARATH7.861e-1529.07Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
RFFG_HAEIN1.341e-1427.04dTDP-glucose 4,6-dehydratase OS=Haemophilus influe... [more]
ARNA_SODGM1.341e-1425.97Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013F12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885273 ID=CV885273; Name=CV885273; organism=Citrus sinensis; type=EST; length=857bp
TAAACTCTTAACGTTCCTGAATTATCGGTTCACTAATCACATTACTTCCT
CGTACTCCCCAAAACACTCACTCTCAACGCCGCTGCAAATAGGTATTGAA
TTTGATAATTGAGATCTGAACAATGGCTAATAATGGAGAGAATCAAACAA
CTACTAAGCCGCCACCATTGCCATCTCCATTGAGATTCTCCAAATTCTTT
CAGTCAAATATGAGAATTTTGGTGACTGGAGGAGCTGGATTCATTGGTTC
TCACCTTGTTGACAAATTGATGGAAAATGAGAAAAATGAGGTGATTGTCG
CTGATAACTACTTCACTGGCTCGAAGGACAATCTTAAGAAATGGATTGGT
CACCCAAGATTTGAGCTCATTCGTCATGATGTGACAGAGCCATTGTTGAT
CGAGGTTGATCAGATTTACCACCTTGCATGCCCTGCTTCTCCGATTTTCT
ACAAGTATAATCCTGTAAAGACAATTAAGACAAATGTGATTGGCACCCTA
AACATGCTAGGACTTGCTAAGCGAGTTGGAGCAAGGATTTTACTCACATC
AACTTCAGAGGTTTATGGTGATCCTCTTATTCACCCTCAACCTGAGACCT
ATTGGGGTAATGTCAATCCAATTGGGGTTCGTAGCTGCTATGATGAGGGA
AAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGACAGCATGGGAT
ACAAATCCGCATTGCTAGAATCTTTAACACTTATGGACCACGCATGAATA
TTGATGATGGGCGTGTGGTCAGCAATTTCATTGCTCANGCACTACGAGGT
GAACCTTTGACTGTCCAAAAGCCTGGAACACAAACTCGCAGTTTCTGTTA
TGTCTCT
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