CV885273
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_PSEPF (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf0-1) GN=arnA PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.751e-14 Identity = 62/227 (27.31%), Postives = 106/227 (46.70%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG----DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845 R+L+ G GFIG+HL ++L+ +E+ EV D GS D + + HPRF + D++ E + + D + L A+PI Y NP++ + + L ++ + R++ STSEVYG + G +N R Y K++ + +++ Y + G+ + R FN GPR++ I R ++ I + G P+ + G Q R F Sbjct: 320 RVLILGVNGFIGNHLSERLLRDERYEVYGLD---IGS-DAIDRLRSHPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYGMCQDKHFDEDRSNLIVGPINK--QRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCF 539
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: TGDS_DICDI (dTDP-D-glucose 4,6-dehydratase OS=Dictyostelium discoideum GN=tgds PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14 Identity = 63/231 (27.27%), Postives = 107/231 (46.32%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKN-EVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGDPLIHPQPETYWGNVNP-------IGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYV 854 +IL+TGGAGFIGSHL L + KN ++IV D + + +NL + F+ + ++ + L+E +D + HLA +K + N++GT +L K + + ST EVYG LI + ++N + + Y K AE L+ Y++ + + I R N YGP+ + +++ FI L + T+ G TR++ Y+ Sbjct: 11 KILITGGAGFIGSHLAIYLTKKFKNSKIIVLDKLDYCSNINNLGCVLKELNFKFYKGNILDSELLENIFEKEKIDIVIHLAAYTHVDNSFKQSIKFTENNILGTHYLLETCKNYKLKKFIYVSTDEVYGSGLIEDNDDNN-NSINQSSNEKSILNPTNPYSASKAGAEHLVQSYYKSFKLPVIITRANNIYGPKQYPE--KIIPKFINLLLNNKKCTIHGTGKNTRNYLYI 238
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_PSEU2 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=arnA PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14 Identity = 63/227 (27.75%), Postives = 108/227 (47.58%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLIHPQPETYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845 R+L+ G GFIG+HL ++L+++++ E+ D GS D +++ P F I D++ E + + D + L A+PI Y NP++ + + L ++ + R++ STSEVYG D + V PI R Y K++ + +++ Y Q G+Q + R FN GPR++ I R ++ I + G P+ + G Q R F Sbjct: 321 RVLILGVNGFIGNHLSERLLQDDRYEIYGMD---IGS-DAIERLRAKPNFHFIEGDISIHTEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRVIFPSTSEVYGMCQDANFNEDTSNL--IVGPINKQRWIYSVSKQLLDRVIWAY-GQKGLQFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCF 540
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAE (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa GN=arnA PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14 Identity = 65/231 (28.14%), Postives = 109/231 (47.19%), Query Frame = 3 Query: 201 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV------TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DP-LIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845 Q R+L+ G GFIG+HL ++L+ + + EV D GS D +++ P F + D+ E + + D I L A+PI Y NP++ + + L ++ + G R++ STSEVYG DP + G +N R Y K++ + +++ Y +Q G++ + R FN GPR++ I R ++ I + G P+ + G Q R F Sbjct: 315 QRRTRVLILGVNGFIGNHLSERLLRDGRYEVHGMD---IGS-DAIERLKADPHFHFVEGDIGIHSEWLEYHVKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYGMCQDPDFDEDRSNLVVGPINK--QRWIYSVSKQLLDRVIWAYGQQ-GLRFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCF 538
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_PSEA8 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain LESB58) GN=arnA PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14 Identity = 65/231 (28.14%), Postives = 109/231 (47.19%), Query Frame = 3 Query: 201 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV------TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DP-LIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845 Q R+L+ G GFIG+HL ++L+ + + EV D GS D +++ P F + D+ E + + D I L A+PI Y NP++ + + L ++ + G R++ STSEVYG DP + G +N R Y K++ + +++ Y +Q G++ + R FN GPR++ I R ++ I + G P+ + G Q R F Sbjct: 315 QRRTRVLILGVNGFIGNHLSERLLRDGRYEVHGMD---IGS-DAIERLKADPHFHFVEGDIGIHSEWLEYHVKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYGMCQDPDFDEDRSNLVVGPINK--QRWIYSVSKQLLDRVIWAYGQQ-GLRFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCF 538
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_PSEA7 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain PA7) GN=arnA PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14 Identity = 65/231 (28.14%), Postives = 109/231 (47.19%), Query Frame = 3 Query: 201 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV------TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DP-LIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845 Q R+L+ G GFIG+HL ++L+ + + EV D GS D +++ P F + D+ E + + D I L A+PI Y NP++ + + L ++ + G R++ STSEVYG DP + G +N R Y K++ + +++ Y +Q G++ + R FN GPR++ I R ++ I + G P+ + G Q R F Sbjct: 315 QRRTRVLILGVNGFIGNHLSERLLRDGRYEVHGMD---IGS-DAIERLKADPHFHFVEGDIGIHSEWLEYHVKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYGMCQDPDFDEDRSNLVVGPINK--QRWIYSVSKQLLDRVIWAYGQQ-GLRFTLFRPFNWMGPRLDRLESARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCF 538
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: GALE_STRMU (UDP-glucose 4-epimerase OS=Streptococcus mutans GN=galE PE=3 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 3.901e-14 Identity = 58/187 (31.02%), Postives = 89/187 (47.59%), Query Frame = 3 Query: 210 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLI--------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPR 743 M ILV GGAG+IGSH+VD+L+E + EV+V D+ TG + + HP + + D+ + + +VD + H A + P+K N G + +L + G + I+ +ST+ YG P P ET P + Y E K + ET+M R +GI+ R FN G + Sbjct: 1 MAILVLGGAGYIGSHMVDRLIEKGEEEVVVVDSLVTGHRAAV-----HPAAKFYQGDLADREFMSMVFRENPDVDAVIHFAAYSLVAESMKKPLKYFDNNTAGMIKLLEVMSEFGVKYIVFSSTAATYGIPDEIPIKET-----TPQRPINPYGESKLMMETIMKWSDRAYGIKFVPLRYFNVAGAK 177
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAB (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=arnA PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.901e-14 Identity = 64/231 (27.71%), Postives = 109/231 (47.19%), Query Frame = 3 Query: 201 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV------TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DP-LIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845 Q R+L+ G GFIG+HL ++L+ + + EV D GS D +++ P F + D+ E + + D + L A+PI Y NP++ + + L ++ + G R++ STSEVYG DP + G +N R Y K++ + +++ Y +Q G++ + R FN GPR++ I R ++ I + G P+ + G Q R F Sbjct: 315 QRRTRVLILGVNGFIGNHLSERLLRDGRYEVHGMD---IGS-DAIERLKADPHFHFVEGDIGIHSEWLEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYGMCQDPDFDEDRSNLVVGPINK--QRWIYSVSKQLLDRVIWAYGQQ-GLRFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCF 538
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_YERE8 (Bifunctional polymyxin resistance protein arnA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=arnA PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 5.095e-14 Identity = 60/227 (26.43%), Postives = 105/227 (46.26%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG----DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845 R+L+ G GFIG+HL ++L+ + + EV D GS D + +++ +P F + D++ E + + D I L A+PI Y NP++ + + L ++ + RI+ STSEVYG G +N R Y K++ + +++ Y + ++ + R FN GPR++ I R ++ I + G P+ + G Q R F Sbjct: 317 RVLILGVNGFIGNHLTERLLRDNRYEVYGLD---IGS-DAICRFLDNPNFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDEDSSRLIVGPINK--QRWIYSVSKQLLDRVIWAYGAKENLKFTLFRPFNWMGPRLDNLDAARIGSSRAITQLILNLVEGSPIKLVDGGEQKRCF 537
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_PSE14 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=arnA PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 6.654e-14 Identity = 63/231 (27.27%), Postives = 110/231 (47.62%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLIHPQPETYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYVS 857 R+L+ G GFIG+HL ++L+++++ ++ D GS D +++ P F I D++ E + + D + L A+PI Y NP++ + + L ++ + R++ STSEVYG D + V PI R Y K++ + +++ Y Q G+Q + R FN GPR++ I R ++ I + G P+ + G Q R F V+ Sbjct: 320 RVLILGVNGFIGNHLSERLLQDDRYDIYGMD---IGS-DAIERLRTKPNFHFIEGDISIHTEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRVIFPSTSEVYGMCQDASFNEDTSNL--IVGPINKQRWIYSVSKQLLDRVIWAY-GQKGLQFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVA 543 The following BLAST results are available for this feature:
BLAST of CV885273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 109
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Sequences
The
following sequences are available for this feature:
EST sequence >CV885273 ID=CV885273; Name=CV885273; organism=Citrus sinensis; type=EST; length=857bpback to top |