CV885273

Overview
NameCV885273
Unique NameCV885273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_PSEPF (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf0-1) GN=arnA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.751e-14
Identity = 62/227 (27.31%), Postives = 106/227 (46.70%), Query Frame = 3
Query:  213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG----DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845
            R+L+ G  GFIG+HL ++L+ +E+ EV   D    GS D + +   HPRF  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   R++  STSEVYG          +     G +N    R  Y   K++ + +++ Y  + G+   + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F
Sbjct:  320 RVLILGVNGFIGNHLSERLLRDERYEVYGLD---IGS-DAIDRLRSHPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYGMCQDKHFDEDRSNLIVGPINK--QRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCF 539          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: TGDS_DICDI (dTDP-D-glucose 4,6-dehydratase OS=Dictyostelium discoideum GN=tgds PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14
Identity = 63/231 (27.27%), Postives = 107/231 (46.32%), Query Frame = 3
Query:  213 RILVTGGAGFIGSHLVDKLMENEKN-EVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGDPLIHPQPETYWGNVNP-------IGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYV 854
            +IL+TGGAGFIGSHL   L +  KN ++IV D   +  + +NL   +    F+  + ++ +  L+E       +D + HLA            +K  + N++GT  +L   K     + +  ST EVYG  LI    +    ++N        +   + Y   K  AE L+  Y++   + + I R  N YGP+   +  +++  FI   L  +  T+   G  TR++ Y+
Sbjct:   11 KILITGGAGFIGSHLAIYLTKKFKNSKIIVLDKLDYCSNINNLGCVLKELNFKFYKGNILDSELLENIFEKEKIDIVIHLAAYTHVDNSFKQSIKFTENNILGTHYLLETCKNYKLKKFIYVSTDEVYGSGLIEDNDDNN-NSINQSSNEKSILNPTNPYSASKAGAEHLVQSYYKSFKLPVIITRANNIYGPKQYPE--KIIPKFINLLLNNKKCTIHGTGKNTRNYLYI 238          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_PSEU2 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=arnA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14
Identity = 63/227 (27.75%), Postives = 108/227 (47.58%), Query Frame = 3
Query:  213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLIHPQPETYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845
            R+L+ G  GFIG+HL ++L+++++ E+   D    GS D +++    P F  I  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   R++  STSEVYG   D   +         V PI   R  Y   K++ + +++ Y  Q G+Q  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F
Sbjct:  321 RVLILGVNGFIGNHLSERLLQDDRYEIYGMD---IGS-DAIERLRAKPNFHFIEGDISIHTEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRVIFPSTSEVYGMCQDANFNEDTSNL--IVGPINKQRWIYSVSKQLLDRVIWAY-GQKGLQFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCF 540          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAE (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa GN=arnA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14
Identity = 65/231 (28.14%), Postives = 109/231 (47.19%), Query Frame = 3
Query:  201 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV------TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DP-LIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845
            Q   R+L+ G  GFIG+HL ++L+ + + EV   D    GS D +++    P F  +  D+       E  + + D I  L   A+PI Y  NP++  + +    L ++    + G R++  STSEVYG   DP     +     G +N    R  Y   K++ + +++ Y +Q G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F
Sbjct:  315 QRRTRVLILGVNGFIGNHLSERLLRDGRYEVHGMD---IGS-DAIERLKADPHFHFVEGDIGIHSEWLEYHVKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYGMCQDPDFDEDRSNLVVGPINK--QRWIYSVSKQLLDRVIWAYGQQ-GLRFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCF 538          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_PSEA8 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain LESB58) GN=arnA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14
Identity = 65/231 (28.14%), Postives = 109/231 (47.19%), Query Frame = 3
Query:  201 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV------TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DP-LIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845
            Q   R+L+ G  GFIG+HL ++L+ + + EV   D    GS D +++    P F  +  D+       E  + + D I  L   A+PI Y  NP++  + +    L ++    + G R++  STSEVYG   DP     +     G +N    R  Y   K++ + +++ Y +Q G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F
Sbjct:  315 QRRTRVLILGVNGFIGNHLSERLLRDGRYEVHGMD---IGS-DAIERLKADPHFHFVEGDIGIHSEWLEYHVKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYGMCQDPDFDEDRSNLVVGPINK--QRWIYSVSKQLLDRVIWAYGQQ-GLRFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCF 538          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_PSEA7 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain PA7) GN=arnA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14
Identity = 65/231 (28.14%), Postives = 109/231 (47.19%), Query Frame = 3
Query:  201 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV------TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DP-LIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845
            Q   R+L+ G  GFIG+HL ++L+ + + EV   D    GS D +++    P F  +  D+       E  + + D I  L   A+PI Y  NP++  + +    L ++    + G R++  STSEVYG   DP     +     G +N    R  Y   K++ + +++ Y +Q G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F
Sbjct:  315 QRRTRVLILGVNGFIGNHLSERLLRDGRYEVHGMD---IGS-DAIERLKADPHFHFVEGDIGIHSEWLEYHVKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYGMCQDPDFDEDRSNLVVGPINK--QRWIYSVSKQLLDRVIWAYGQQ-GLRFTLFRPFNWMGPRLDRLESARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCF 538          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: GALE_STRMU (UDP-glucose 4-epimerase OS=Streptococcus mutans GN=galE PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.901e-14
Identity = 58/187 (31.02%), Postives = 89/187 (47.59%), Query Frame = 3
Query:  210 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLI--------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPR 743
            M ILV GGAG+IGSH+VD+L+E  + EV+V D+  TG +  +     HP  +  + D+ +   +        +VD + H A  +        P+K    N  G + +L +    G + I+ +ST+  YG P   P  ET      P    + Y E K + ET+M    R +GI+    R FN  G +
Sbjct:    1 MAILVLGGAGYIGSHMVDRLIEKGEEEVVVVDSLVTGHRAAV-----HPAAKFYQGDLADREFMSMVFRENPDVDAVIHFAAYSLVAESMKKPLKYFDNNTAGMIKLLEVMSEFGVKYIVFSSTAATYGIPDEIPIKET-----TPQRPINPYGESKLMMETIMKWSDRAYGIKFVPLRYFNVAGAK 177          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAB (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=arnA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.901e-14
Identity = 64/231 (27.71%), Postives = 109/231 (47.19%), Query Frame = 3
Query:  201 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV------TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DP-LIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845
            Q   R+L+ G  GFIG+HL ++L+ + + EV   D    GS D +++    P F  +  D+       E  + + D +  L   A+PI Y  NP++  + +    L ++    + G R++  STSEVYG   DP     +     G +N    R  Y   K++ + +++ Y +Q G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F
Sbjct:  315 QRRTRVLILGVNGFIGNHLSERLLRDGRYEVHGMD---IGS-DAIERLKADPHFHFVEGDIGIHSEWLEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYGMCQDPDFDEDRSNLVVGPINK--QRWIYSVSKQLLDRVIWAYGQQ-GLRFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCF 538          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_YERE8 (Bifunctional polymyxin resistance protein arnA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=arnA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.095e-14
Identity = 60/227 (26.43%), Postives = 105/227 (46.26%), Query Frame = 3
Query:  213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG----DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845
            R+L+ G  GFIG+HL ++L+ + + EV   D    GS D + +++ +P F  +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG                G +N    R  Y   K++ + +++ Y  +  ++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F
Sbjct:  317 RVLILGVNGFIGNHLTERLLRDNRYEVYGLD---IGS-DAICRFLDNPNFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDEDSSRLIVGPINK--QRWIYSVSKQLLDRVIWAYGAKENLKFTLFRPFNWMGPRLDNLDAARIGSSRAITQLILNLVEGSPIKLVDGGEQKRCF 537          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_PSE14 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=arnA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.654e-14
Identity = 63/231 (27.27%), Postives = 110/231 (47.62%), Query Frame = 3
Query:  213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLIHPQPETYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYVS 857
            R+L+ G  GFIG+HL ++L+++++ ++   D    GS D +++    P F  I  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   R++  STSEVYG   D   +         V PI   R  Y   K++ + +++ Y  Q G+Q  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  V+
Sbjct:  320 RVLILGVNGFIGNHLSERLLQDDRYDIYGMD---IGS-DAIERLRTKPNFHFIEGDISIHTEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRVIFPSTSEVYGMCQDASFNEDTSNL--IVGPINKQRWIYSVSKQLLDRVIWAY-GQKGLQFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVA 543          
The following BLAST results are available for this feature:
BLAST of CV885273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
ARNA_PSEPF1.751e-1427.31Bifunctional polymyxin resistance protein arnA OS=... [more]
TGDS_DICDI2.987e-1427.27dTDP-D-glucose 4,6-dehydratase OS=Dictyostelium di... [more]
ARNA_PSEU22.987e-1427.75Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEAE2.987e-1428.14Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEA82.987e-1428.14Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEA72.987e-1428.14Bifunctional polymyxin resistance protein arnA OS=... [more]
GALE_STRMU3.901e-1431.02UDP-glucose 4-epimerase OS=Streptococcus mutans GN... [more]
ARNA_PSEAB3.901e-1427.71Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERE85.095e-1426.43Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSE146.654e-1427.27Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013F12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885273 ID=CV885273; Name=CV885273; organism=Citrus sinensis; type=EST; length=857bp
TAAACTCTTAACGTTCCTGAATTATCGGTTCACTAATCACATTACTTCCT
CGTACTCCCCAAAACACTCACTCTCAACGCCGCTGCAAATAGGTATTGAA
TTTGATAATTGAGATCTGAACAATGGCTAATAATGGAGAGAATCAAACAA
CTACTAAGCCGCCACCATTGCCATCTCCATTGAGATTCTCCAAATTCTTT
CAGTCAAATATGAGAATTTTGGTGACTGGAGGAGCTGGATTCATTGGTTC
TCACCTTGTTGACAAATTGATGGAAAATGAGAAAAATGAGGTGATTGTCG
CTGATAACTACTTCACTGGCTCGAAGGACAATCTTAAGAAATGGATTGGT
CACCCAAGATTTGAGCTCATTCGTCATGATGTGACAGAGCCATTGTTGAT
CGAGGTTGATCAGATTTACCACCTTGCATGCCCTGCTTCTCCGATTTTCT
ACAAGTATAATCCTGTAAAGACAATTAAGACAAATGTGATTGGCACCCTA
AACATGCTAGGACTTGCTAAGCGAGTTGGAGCAAGGATTTTACTCACATC
AACTTCAGAGGTTTATGGTGATCCTCTTATTCACCCTCAACCTGAGACCT
ATTGGGGTAATGTCAATCCAATTGGGGTTCGTAGCTGCTATGATGAGGGA
AAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGACAGCATGGGAT
ACAAATCCGCATTGCTAGAATCTTTAACACTTATGGACCACGCATGAATA
TTGATGATGGGCGTGTGGTCAGCAATTTCATTGCTCANGCACTACGAGGT
GAACCTTTGACTGTCCAAAAGCCTGGAACACAAACTCGCAGTTTCTGTTA
TGTCTCT
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