CV885273

Overview
NameCV885273
Unique NameCV885273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_PSEFS (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain SBW25) GN=arnA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.691e-14
Identity = 62/227 (27.31%), Postives = 109/227 (48.02%), Query Frame = 3
Query:  213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQ---PETYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845
            R+L+ G  GFIG+HL ++L+ +++ EV   D    GS D +++   HP F  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   R++  STSEVYG  +   Q    +T    V P+   R  Y   K++ + +++ Y  + G+   + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F
Sbjct:  320 RVLILGVNGFIGNHLSERLLRDDRYEVYGLD---IGS-DAIERLRSHPNFHYVEGDISIHTEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYG--MCQDQYFDEDTSNLVVGPVNKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCF 539          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: RFBB_SALTY (dTDP-glucose 4,6-dehydratase OS=Salmonella typhimurium GN=rfbB PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.135e-13
Identity = 66/239 (27.62%), Postives = 106/239 (44.35%), Query Frame = 3
Query:  210 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA----------KRVGARILLTSTSEVYGDPLIHPQPE------TYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYV 854
            M+IL+TGGAGFIGS +V  +++N ++ V+  D   + G+ ++L       R+     D+ +   I       + D + HLA  +        P   I+TN++GT  +L +A          K+   R    ST EVYGD L HP           +         S Y   K  ++ L+  + R +G+   +    N YGP    +  +++   I  AL G+PL +   G Q R + YV
Sbjct:    1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGD-LPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKPLPIYGKGDQIRDWLYV 236          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_PSEF5 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=arnA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.135e-13
Identity = 63/227 (27.75%), Postives = 109/227 (48.02%), Query Frame = 3
Query:  213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLIHPQPETYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845
            R+L+ G  GFIG+HL ++L+ ++K +V   D    GS D +++   HP F  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   R++  STSEVYG   D   +   +T    V PI   R  Y   K++ + +++ Y  + G+   + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F
Sbjct:  320 RVLILGVNGFIGNHLSERLLRDDKYDVYGLD---IGS-DAIERLRSHPNFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYGMCQDK--NFDEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCF 539          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: RFBB_NEIMA (dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup A GN=rfbB1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.529e-13
Identity = 64/232 (27.59%), Postives = 106/232 (45.69%), Query Frame = 3
Query:  213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA----------KRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYV 854
            +ILVTGGAGFIGS +V  ++ N ++ V+  D   + G+ ++L     +PR+   + D+ +   ++        D + HLA  +       +  + I+TN++GT N+L  A          K    R    ST EVYGD       +  +    P    S Y   K  ++ L+  + R +G+   +    N YGP    +  +++   I  AL G+PL V   G Q R + +V
Sbjct:    3 KILVTGGAGFIGSAVVRHIIRNTQDSVVNLDKLTYAGNLESLTDIADNPRYAFEQVDICDRAELDRVFAQHRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYRQQMPSEKHEAFRFHHISTDEVYGD---LSGTDDLFTETAPYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPE--KLIPLMILNALDGKPLPVYGDGMQIRDWLFV 229          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: RFFG_ECOLI (dTDP-glucose 4,6-dehydratase OS=Escherichia coli (strain K12) GN=rffG PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 3.302e-13
Identity = 66/232 (28.45%), Postives = 103/232 (44.40%), Query Frame = 3
Query:  213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA----------KRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYV 854
            +IL+TGGAGFIGS LV  ++    + V+V D   + G+  +L       RF   + D+ +   +       + D + HLA  +        P   I+TN++GT  +L  A          K+   R    ST EVYGD  +H   + ++    P    S Y   K  ++ L+  + R +G+   I    N YGP    +  +++   I  AL G+ L V   G Q R + YV
Sbjct:    3 KILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGD--LH-STDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPE--KLIPLMILNALAGKSLPVYGNGQQIRDWLYV 229          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: RFBB_NEIMB (dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup B GN=rfbB1 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.302e-13
Identity = 63/232 (27.16%), Postives = 107/232 (46.12%), Query Frame = 3
Query:  213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK----------RVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYV 854
            +ILVTGGAGFIGS +V  ++ N ++ V+  D   + G+ ++L +   +PR+   + D+ +   ++        D + HLA  +       +  + I+TN++GT N+L  A+              R    ST EVYGD       +  +    P    S Y   K  ++ L+  + R +G+   +    N YGP    +  +++   I  AL G+PL V   G Q R + +V
Sbjct:    3 KILVTGGAGFIGSAVVRHIIRNTRDAVVNVDKLTYAGNLESLTEVADNPRYAFEQVDICDRAELDRVFAQYRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYWQQMPSEQHEAFRFHHISTDEVYGD---LGGTDDLFTETAPYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPE--KLIPLMILNALDGKPLPVYGDGMQIRDWLFV 229          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: Y1055_METJA (Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii GN=MJ1055 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.313e-13
Identity = 71/228 (31.14%), Postives = 101/228 (44.30%), Query Frame = 3
Query:  216 ILVTGGAGFIGSHLVDKLMENEKNEVIVA----DNYFTGSKDNLKKWI--GHPRFELIR------HDVTEPLLI-EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYVS 857
            ILVTG AGFIG HL   LM+N ++  ++     +NY+       +  I   +  +  I+       D+ E L   E+D I HL   A   +   NP   IK+N +GTLN+   A+R    +++  S+S VYG     P  E    +  PI   S Y   KR  E +   YH  +GI++   R F  YG     D       F    L G+ + V   G   R F Y+S
Sbjct:    6 ILVTGSAGFIGFHLSKYLMDNYEDLKVIGIDNLNNYYNPVLKEKRNEILKNYENYTFIKLDFSDWDDLVENLKDKEIDLIVHLGAQAGVRYSLQNPWAYIKSNEMGTLNIFEFARRFDIEKVVYASSSSVYGGNRKIPFSEDDRVD-KPI---SLYASTKRSNELMAHVYHHLYGIKMIGLRFFTVYGEYGRPD--MAYFKFAKNILLGKEIEVYNYGNMERDFTYIS 227          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: RFBB_SHIFL (dTDP-glucose 4,6-dehydratase OS=Shigella flexneri GN=rfbB PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.633e-13
Identity = 65/239 (27.20%), Postives = 104/239 (43.51%), Query Frame = 3
Query:  210 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA----------KRVGARILLTSTSEVYGDPLIHPQPET------YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYV 854
            M+ILVTGGAGFIGS +V  ++ N ++ V+  D   + G+ ++L       R+     D+ + + +       + D + HLA  +        P   I+TN++GT  +L  A          K+   R    ST EVYGD L HP           +         S Y   K  ++ L+  + R +G+   +    N YGP    +  +++   I  AL G+ L +   G Q R + YV
Sbjct:    1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYAFEHADICDAVAMSRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALNDEKKKSFRFHHISTDEVYGD-LPHPDEANNNEALPLFTETTAYAPSSPYSASKASSDHLVRAWKRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKALPIYGKGDQIRDWLYV 236          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: RFBB_RHISN (Probable dTDP-glucose 4,6-dehydratase OS=Rhizobium sp. (strain NGR234) GN=NGR_a03580 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.633e-13
Identity = 68/232 (29.31%), Postives = 103/232 (44.40%), Query Frame = 3
Query:  210 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA----------RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYV 854
            MRILVTGGAGFIGS LV  L+      + V    + G+  +LK   G   +  +R D+ + + I       + D + HLA  +            ++TNV GT  ML  A++  +          ++L  ST EVYG      Q E     V+P    S Y   K  ++     + R +G+ + I+   N YGP    +  +++   I  AL  +PL V   G+  R + YV
Sbjct:    1 MRILVTGGAGFIGSALVRYLVSINAEVLNVDKLTYAGNLASLKPVEGLRNYRFLRADICDRVAINEAFETFQPDYVIHLAAESHVDRSITGADDFVQTNVNGTFTMLETARQYWSNLSQNRKAFFKMLHVSTDEVYGSLGDRGQFE----EVSPYDPSSPYSASKAASDHFATAWQRTYGLPVVISNCSNNYGPFHFPE--KLIPLMILNALDRKPLPVYGTGSNIRDWLYV 226          
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: RFBB_ECOLI (dTDP-glucose 4,6-dehydratase OS=Escherichia coli (strain K12) GN=rfbB PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.633e-13
Identity = 66/239 (27.62%), Postives = 106/239 (44.35%), Query Frame = 3
Query:  210 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTE-PLLIEV------DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA----------KRVGARILLTSTSEVYGDPLIHP------QPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYV 854
            M+ILVTGGAGFIGS +V  ++ N ++ V+  D   + G++++L       R+     D+ + P +  +      D + HLA  +        P   I+TN++GT  +L  A          K+   R    ST EVYGD L HP      +    +         S Y   K  ++ L+  + R +G+   +    N YGP    +  +++   I  AL G+ L +   G Q R + YV
Sbjct:    1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNRESLADVSDSERYVFEHADICDAPAMARIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDSDKKNSFRFHHISTDEVYGD-LPHPDEVNNTEELPLFTETTAYAPSSPYSASKASSDHLVRAWKRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKALPIYGKGDQIRDWLYV 236          
The following BLAST results are available for this feature:
BLAST of CV885273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
ARNA_PSEFS8.691e-1427.31Bifunctional polymyxin resistance protein arnA OS=... [more]
RFBB_SALTY1.135e-1327.62dTDP-glucose 4,6-dehydratase OS=Salmonella typhimu... [more]
ARNA_PSEF51.135e-1327.75Bifunctional polymyxin resistance protein arnA OS=... [more]
RFBB_NEIMA2.529e-1327.59dTDP-glucose 4,6-dehydratase OS=Neisseria meningit... [more]
RFFG_ECOLI3.302e-1328.45dTDP-glucose 4,6-dehydratase OS=Escherichia coli (... [more]
RFBB_NEIMB3.302e-1327.16dTDP-glucose 4,6-dehydratase OS=Neisseria meningit... [more]
Y1055_METJA4.313e-1331.14Uncharacterized protein MJ1055 OS=Methanocaldococc... [more]
RFBB_SHIFL5.633e-1327.20dTDP-glucose 4,6-dehydratase OS=Shigella flexneri ... [more]
RFBB_RHISN5.633e-1329.31Probable dTDP-glucose 4,6-dehydratase OS=Rhizobium... [more]
RFBB_ECOLI5.633e-1327.62dTDP-glucose 4,6-dehydratase OS=Escherichia coli (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013F12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885273 ID=CV885273; Name=CV885273; organism=Citrus sinensis; type=EST; length=857bp
TAAACTCTTAACGTTCCTGAATTATCGGTTCACTAATCACATTACTTCCT
CGTACTCCCCAAAACACTCACTCTCAACGCCGCTGCAAATAGGTATTGAA
TTTGATAATTGAGATCTGAACAATGGCTAATAATGGAGAGAATCAAACAA
CTACTAAGCCGCCACCATTGCCATCTCCATTGAGATTCTCCAAATTCTTT
CAGTCAAATATGAGAATTTTGGTGACTGGAGGAGCTGGATTCATTGGTTC
TCACCTTGTTGACAAATTGATGGAAAATGAGAAAAATGAGGTGATTGTCG
CTGATAACTACTTCACTGGCTCGAAGGACAATCTTAAGAAATGGATTGGT
CACCCAAGATTTGAGCTCATTCGTCATGATGTGACAGAGCCATTGTTGAT
CGAGGTTGATCAGATTTACCACCTTGCATGCCCTGCTTCTCCGATTTTCT
ACAAGTATAATCCTGTAAAGACAATTAAGACAAATGTGATTGGCACCCTA
AACATGCTAGGACTTGCTAAGCGAGTTGGAGCAAGGATTTTACTCACATC
AACTTCAGAGGTTTATGGTGATCCTCTTATTCACCCTCAACCTGAGACCT
ATTGGGGTAATGTCAATCCAATTGGGGTTCGTAGCTGCTATGATGAGGGA
AAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGACAGCATGGGAT
ACAAATCCGCATTGCTAGAATCTTTAACACTTATGGACCACGCATGAATA
TTGATGATGGGCGTGTGGTCAGCAATTTCATTGCTCANGCACTACGAGGT
GAACCTTTGACTGTCCAAAAGCCTGGAACACAAACTCGCAGTTTCTGTTA
TGTCTCT
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