CV885273
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_PSEFS (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain SBW25) GN=arnA PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 8.691e-14 Identity = 62/227 (27.31%), Postives = 109/227 (48.02%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQ---PETYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845 R+L+ G GFIG+HL ++L+ +++ EV D GS D +++ HP F + D++ E + + D + L A+PI Y NP++ + + L ++ + R++ STSEVYG + Q +T V P+ R Y K++ + +++ Y + G+ + R FN GPR++ I R ++ I + G P+ + G Q R F Sbjct: 320 RVLILGVNGFIGNHLSERLLRDDRYEVYGLD---IGS-DAIERLRSHPNFHYVEGDISIHTEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYG--MCQDQYFDEDTSNLVVGPVNKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCF 539
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: RFBB_SALTY (dTDP-glucose 4,6-dehydratase OS=Salmonella typhimurium GN=rfbB PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.135e-13 Identity = 66/239 (27.62%), Postives = 106/239 (44.35%), Query Frame = 3 Query: 210 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA----------KRVGARILLTSTSEVYGDPLIHPQPE------TYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYV 854 M+IL+TGGAGFIGS +V +++N ++ V+ D + G+ ++L R+ D+ + I + D + HLA + P I+TN++GT +L +A K+ R ST EVYGD L HP + S Y K ++ L+ + R +G+ + N YGP + +++ I AL G+PL + G Q R + YV Sbjct: 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGD-LPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKPLPIYGKGDQIRDWLYV 236
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: ARNA_PSEF5 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=arnA PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.135e-13 Identity = 63/227 (27.75%), Postives = 109/227 (48.02%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLIHPQPETYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAXALRGEPLTVQKPGTQTRSF 845 R+L+ G GFIG+HL ++L+ ++K +V D GS D +++ HP F + D++ E + + D + L A+PI Y NP++ + + L ++ + R++ STSEVYG D + +T V PI R Y K++ + +++ Y + G+ + R FN GPR++ I R ++ I + G P+ + G Q R F Sbjct: 320 RVLILGVNGFIGNHLSERLLRDDKYDVYGLD---IGS-DAIERLRSHPNFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYGMCQDK--NFDEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCF 539
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: RFBB_NEIMA (dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup A GN=rfbB1 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.529e-13 Identity = 64/232 (27.59%), Postives = 106/232 (45.69%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA----------KRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYV 854 +ILVTGGAGFIGS +V ++ N ++ V+ D + G+ ++L +PR+ + D+ + ++ D + HLA + + + I+TN++GT N+L A K R ST EVYGD + + P S Y K ++ L+ + R +G+ + N YGP + +++ I AL G+PL V G Q R + +V Sbjct: 3 KILVTGGAGFIGSAVVRHIIRNTQDSVVNLDKLTYAGNLESLTDIADNPRYAFEQVDICDRAELDRVFAQHRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYRQQMPSEKHEAFRFHHISTDEVYGD---LSGTDDLFTETAPYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPE--KLIPLMILNALDGKPLPVYGDGMQIRDWLFV 229
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: RFFG_ECOLI (dTDP-glucose 4,6-dehydratase OS=Escherichia coli (strain K12) GN=rffG PE=1 SV=3) HSP 1 Score: 75.8702 bits (185), Expect = 3.302e-13 Identity = 66/232 (28.45%), Postives = 103/232 (44.40%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA----------KRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYV 854 +IL+TGGAGFIGS LV ++ + V+V D + G+ +L RF + D+ + + + D + HLA + P I+TN++GT +L A K+ R ST EVYGD +H + ++ P S Y K ++ L+ + R +G+ I N YGP + +++ I AL G+ L V G Q R + YV Sbjct: 3 KILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGD--LH-STDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPE--KLIPLMILNALAGKSLPVYGNGQQIRDWLYV 229
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: RFBB_NEIMB (dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup B GN=rfbB1 PE=3 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 3.302e-13 Identity = 63/232 (27.16%), Postives = 107/232 (46.12%), Query Frame = 3 Query: 213 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK----------RVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYV 854 +ILVTGGAGFIGS +V ++ N ++ V+ D + G+ ++L + +PR+ + D+ + ++ D + HLA + + + I+TN++GT N+L A+ R ST EVYGD + + P S Y K ++ L+ + R +G+ + N YGP + +++ I AL G+PL V G Q R + +V Sbjct: 3 KILVTGGAGFIGSAVVRHIIRNTRDAVVNVDKLTYAGNLESLTEVADNPRYAFEQVDICDRAELDRVFAQYRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYWQQMPSEQHEAFRFHHISTDEVYGD---LGGTDDLFTETAPYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPE--KLIPLMILNALDGKPLPVYGDGMQIRDWLFV 229
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: Y1055_METJA (Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii GN=MJ1055 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.313e-13 Identity = 71/228 (31.14%), Postives = 101/228 (44.30%), Query Frame = 3 Query: 216 ILVTGGAGFIGSHLVDKLMENEKNEVIVA----DNYFTGSKDNLKKWI--GHPRFELIR------HDVTEPLLI-EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYVS 857 ILVTG AGFIG HL LM+N ++ ++ +NY+ + I + + I+ D+ E L E+D I HL A + NP IK+N +GTLN+ A+R +++ S+S VYG P E + PI S Y KR E + YH +GI++ R F YG D F L G+ + V G R F Y+S Sbjct: 6 ILVTGSAGFIGFHLSKYLMDNYEDLKVIGIDNLNNYYNPVLKEKRNEILKNYENYTFIKLDFSDWDDLVENLKDKEIDLIVHLGAQAGVRYSLQNPWAYIKSNEMGTLNIFEFARRFDIEKVVYASSSSVYGGNRKIPFSEDDRVD-KPI---SLYASTKRSNELMAHVYHHLYGIKMIGLRFFTVYGEYGRPD--MAYFKFAKNILLGKEIEVYNYGNMERDFTYIS 227
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: RFBB_SHIFL (dTDP-glucose 4,6-dehydratase OS=Shigella flexneri GN=rfbB PE=3 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 5.633e-13 Identity = 65/239 (27.20%), Postives = 104/239 (43.51%), Query Frame = 3 Query: 210 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA----------KRVGARILLTSTSEVYGDPLIHPQPET------YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYV 854 M+ILVTGGAGFIGS +V ++ N ++ V+ D + G+ ++L R+ D+ + + + + D + HLA + P I+TN++GT +L A K+ R ST EVYGD L HP + S Y K ++ L+ + R +G+ + N YGP + +++ I AL G+ L + G Q R + YV Sbjct: 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYAFEHADICDAVAMSRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALNDEKKKSFRFHHISTDEVYGD-LPHPDEANNNEALPLFTETTAYAPSSPYSASKASSDHLVRAWKRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKALPIYGKGDQIRDWLYV 236
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: RFBB_RHISN (Probable dTDP-glucose 4,6-dehydratase OS=Rhizobium sp. (strain NGR234) GN=NGR_a03580 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.633e-13 Identity = 68/232 (29.31%), Postives = 103/232 (44.40%), Query Frame = 3 Query: 210 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA----------RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYV 854 MRILVTGGAGFIGS LV L+ + V + G+ +LK G + +R D+ + + I + D + HLA + ++TNV GT ML A++ + ++L ST EVYG Q E V+P S Y K ++ + R +G+ + I+ N YGP + +++ I AL +PL V G+ R + YV Sbjct: 1 MRILVTGGAGFIGSALVRYLVSINAEVLNVDKLTYAGNLASLKPVEGLRNYRFLRADICDRVAINEAFETFQPDYVIHLAAESHVDRSITGADDFVQTNVNGTFTMLETARQYWSNLSQNRKAFFKMLHVSTDEVYGSLGDRGQFE----EVSPYDPSSPYSASKAASDHFATAWQRTYGLPVVISNCSNNYGPFHFPE--KLIPLMILNALDRKPLPVYGTGSNIRDWLYV 226
BLAST of CV885273 vs. ExPASy Swiss-Prot
Match: RFBB_ECOLI (dTDP-glucose 4,6-dehydratase OS=Escherichia coli (strain K12) GN=rfbB PE=3 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 5.633e-13 Identity = 66/239 (27.62%), Postives = 106/239 (44.35%), Query Frame = 3 Query: 210 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTE-PLLIEV------DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA----------KRVGARILLTSTSEVYGDPLIHP------QPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAXALRGEPLTVQKPGTQTRSFCYV 854 M+ILVTGGAGFIGS +V ++ N ++ V+ D + G++++L R+ D+ + P + + D + HLA + P I+TN++GT +L A K+ R ST EVYGD L HP + + S Y K ++ L+ + R +G+ + N YGP + +++ I AL G+ L + G Q R + YV Sbjct: 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNRESLADVSDSERYVFEHADICDAPAMARIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDSDKKNSFRFHHISTDEVYGD-LPHPDEVNNTEELPLFTETTAYAPSSPYSASKASSDHLVRAWKRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKALPIYGKGDQIRDWLYV 236 The following BLAST results are available for this feature:
BLAST of CV885273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 109
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Sequences
The
following sequences are available for this feature:
EST sequence >CV885273 ID=CV885273; Name=CV885273; organism=Citrus sinensis; type=EST; length=857bpback to top |