CV885270

Overview
NameCV885270
Unique NameCV885270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length395
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885270 vs. ExPASy Swiss-Prot
Match: METK_LACRJ (S-adenosylmethionine synthetase OS=Lactobacillus reuteri (strain JCM 1112) GN=metK PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.100e-33
Identity = 68/116 (58.62%), Postives = 86/116 (74.14%), Query Frame = 1
Query:   40 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEE 387
            E  LFTSESV+EGHPDK+ DQ+SDA+LD  L +DPDS+VA ET   T +V+VFGE++TKA V+ ++IVRDT R IG+T    G DAD+C V+  I++QSPDIAQGV   L  R  E
Sbjct:    3 ERHLFTSESVSEGHPDKIADQISDAILDELLKKDPDSRVAVETSVTTGLVLVFGEVSTKAYVNIQQIVRDTIRKIGYTDGKYGFDADNCAVITAIDEQSPDIAQGVDDSLETREGE 118          
BLAST of CV885270 vs. ExPASy Swiss-Prot
Match: METK_LACRD (S-adenosylmethionine synthetase OS=Lactobacillus reuteri (strain DSM 20016) GN=metK PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.100e-33
Identity = 68/116 (58.62%), Postives = 86/116 (74.14%), Query Frame = 1
Query:   40 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEE 387
            E  LFTSESV+EGHPDK+ DQ+SDA+LD  L +DPDS+VA ET   T +V+VFGE++TKA V+ ++IVRDT R IG+T    G DAD+C V+  I++QSPDIAQGV   L  R  E
Sbjct:    3 ERHLFTSESVSEGHPDKIADQISDAILDELLKKDPDSRVAVETSVTTGLVLVFGEVSTKAYVNIQQIVRDTIRKIGYTDGKYGFDADNCAVITAIDEQSPDIAQGVDDSLETREGE 118          
BLAST of CV885270 vs. ExPASy Swiss-Prot
Match: METK_PROMT (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain NATL2A) GN=metK PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.048e-33
Identity = 68/123 (55.28%), Postives = 91/123 (73.98%), Query Frame = 1
Query:   37 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTS-DDVGLDADHCKVLVNIEQQSPDIAQGVH---GHLTKRAEEIG 393
            M  ++FTSESV EGHPDK+CDQVSDAVLDACL++DP S+VACE    T + ++ GEIT+KA VD+ K+VR+  ++IG+ S  D G DA+ C VLV ++QQS DIAQGV+    H T   +++G
Sbjct:    1 MSRYVFTSESVTEGHPDKICDQVSDAVLDACLSEDPTSRVACEAVVNTGLCLITGEITSKAEVDFNKLVREVIKNIGYRSASDGGFDANSCAVLVALDQQSSDIAQGVNEAEDHSTDPLDQVG 123          
BLAST of CV885270 vs. ExPASy Swiss-Prot
Match: METK_TREPS (S-adenosylmethionine synthetase OS=Treponema pallidum subsp. pallidum (strain SS14) GN=metK PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.287e-33
Identity = 69/109 (63.30%), Postives = 84/109 (77.06%), Query Frame = 1
Query:   37 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHG 363
            METF FTSESV+EGHPDKLCDQ+SDAVLDACL+QDP S VACET   T+++++ GEI+T+A+++  +I RD    IG+ S DVGLDA    VL     QSPDIAQGVHG
Sbjct:    1 METF-FTSESVSEGHPDKLCDQISDAVLDACLSQDPHSCVACETFASTSLILIGGEISTRAHINLTQIARDVAADIGYVSADVGLDAASMAVLDMTHHQSPDIAQGVHG 108          
BLAST of CV885270 vs. ExPASy Swiss-Prot
Match: METK_TREPA (S-adenosylmethionine synthetase OS=Treponema pallidum GN=metK PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.287e-33
Identity = 69/109 (63.30%), Postives = 84/109 (77.06%), Query Frame = 1
Query:   37 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHG 363
            METF FTSESV+EGHPDKLCDQ+SDAVLDACL+QDP S VACET   T+++++ GEI+T+A+++  +I RD    IG+ S DVGLDA    VL     QSPDIAQGVHG
Sbjct:    1 METF-FTSESVSEGHPDKLCDQISDAVLDACLSQDPHSCVACETFASTSLILIGGEISTRAHINLTQIARDVAADIGYVSADVGLDAASMAVLDMTHHQSPDIAQGVHG 108          
BLAST of CV885270 vs. ExPASy Swiss-Prot
Match: METK_GEOSM (S-adenosylmethionine synthetase OS=Geobacter sp. (strain M21) GN=metK PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.287e-33
Identity = 66/108 (61.11%), Postives = 83/108 (76.85%), Query Frame = 1
Query:   34 KMETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGV 357
            +M+ F+FTSESV+EGHPDK+ DQVSDA+LDA L QDP S+VACET   T M ++ GEITT A +DY KIVR+T R IG+    +G D + C VL +I++QSPDIAQGV
Sbjct:    2 EMKDFIFTSESVSEGHPDKVADQVSDAILDAILTQDPKSRVACETMVTTGMAVIAGEITTNAIIDYPKIVRETIREIGYNDSAMGFDWETCAVLTSIDKQSPDIAQGV 109          
BLAST of CV885270 vs. ExPASy Swiss-Prot
Match: METK_MESFL (S-adenosylmethionine synthetase OS=Mesoplasma florum GN=metK PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 6.905e-33
Identity = 63/103 (61.17%), Postives = 82/103 (79.61%), Query Frame = 1
Query:   49 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGV 357
            LFTSESV+EGHPDK+CDQ+SDA+LD  L QDP++KVACET   TN +++ G+ITT A+VDYEKI RD  R IG+ +D  G++AD CK+ + +EQQS DIA G+
Sbjct:    4 LFTSESVSEGHPDKICDQISDAILDEVLKQDPNAKVACETFATTNYLLIGGQITTTASVDYEKIARDVLRKIGYNNDAYGINADTCKIDIRVEQQSADIALGI 106          
BLAST of CV885270 vs. ExPASy Swiss-Prot
Match: METK_GEOUR (S-adenosylmethionine synthetase OS=Geobacter uraniireducens (strain Rf4) GN=metK PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 6.905e-33
Identity = 67/108 (62.04%), Postives = 83/108 (76.85%), Query Frame = 1
Query:   34 KMETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGV 357
            +M+ F+FTSESV+EGHPDK+ DQVSDA+LDA L QDP S+VACET   T M +V GEITT A VDY KIVR+T + IG+    +G D + C VL +I++QSPDIAQGV
Sbjct:    2 EMKDFIFTSESVSEGHPDKVADQVSDAILDAILTQDPKSRVACETLVTTGMTVVAGEITTNAIVDYPKIVRETIKEIGYNDSAMGFDWETCAVLTSIDKQSPDIAQGV 109          
BLAST of CV885270 vs. ExPASy Swiss-Prot
Match: METK_GEOSW (S-adenosylmethionine synthetase OS=Geobacillus sp. (strain WCH70) GN=metK PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 6.905e-33
Identity = 68/110 (61.82%), Postives = 81/110 (73.64%), Query Frame = 1
Query:   49 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 378
            LFTSESV EGHPDK+CDQ+SDA+LDA L +DP+++VACET   T +V+V GEITT   VD  KIVRDT R IG+T    G DAD C VL +I++QSPDIA GV   L  R
Sbjct:    7 LFTSESVTEGHPDKICDQISDAILDAILEKDPNARVACETSVTTGLVLVSGEITTSTYVDIPKIVRDTVREIGYTRAKYGFDADTCAVLTSIDEQSPDIAMGVDKALEAR 116          
BLAST of CV885270 vs. ExPASy Swiss-Prot
Match: METK_SHEB9 (S-adenosylmethionine synthetase OS=Shewanella baltica (strain OS195) GN=metK PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.019e-33
Identity = 70/107 (65.42%), Postives = 81/107 (75.70%), Query Frame = 1
Query:   37 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGV 357
            M   LFTSESV+EGHPDK+ DQ+SDAVLDA LAQDP ++VACET  KT MV+V GE+TT A VD E+I R T R IG+T  D+G DAD C VL  I +QSPDI QGV
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILAQDPKARVACETYVKTGMVLVGGEVTTSAWVDIEEITRKTVREIGYTHSDMGFDADSCAVLNAIGKQSPDINQGV 107          
The following BLAST results are available for this feature:
BLAST of CV885270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_LACRJ3.100e-3358.62S-adenosylmethionine synthetase OS=Lactobacillus r... [more]
METK_LACRD3.100e-3358.62S-adenosylmethionine synthetase OS=Lactobacillus r... [more]
METK_PROMT4.048e-3355.28S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_TREPS5.287e-3363.30S-adenosylmethionine synthetase OS=Treponema palli... [more]
METK_TREPA5.287e-3363.30S-adenosylmethionine synthetase OS=Treponema palli... [more]
METK_GEOSM5.287e-3361.11S-adenosylmethionine synthetase OS=Geobacter sp. (... [more]
METK_MESFL6.905e-3361.17S-adenosylmethionine synthetase OS=Mesoplasma flor... [more]
METK_GEOUR6.905e-3362.04S-adenosylmethionine synthetase OS=Geobacter urani... [more]
METK_GEOSW6.905e-3361.82S-adenosylmethionine synthetase OS=Geobacillus sp.... [more]
METK_SHEB99.019e-3365.42S-adenosylmethionine synthetase OS=Shewanella balt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013F10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885270 ID=CV885270; Name=CV885270; organism=Citrus sinensis; type=EST; length=395bp
AGTAAACTGCAGCTTCGGTTAATCAAATTAAAGAAAATGGAAACATTTCT
TTTCACATCAGAATCAGTGAACGAGGGTCACCCGGACAAGCTGTGTGACC
AAGTTTCGGACGCAGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGC
AAAGTTGCATGTGAAACATGCACAAAGACCAACATGGTCATGGTTTTTGG
AGAAATTACAACCAAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATA
CATGCAGATCGATTGGGTTCACATCGGACGATGTGGGGCTTGATGCTGAT
CACTGCAAAGTTCTTGTTAATATTGAGCAGCAGAGCCCTGACATTGCTCA
GGGTGTTCATGGGCATCTCACAAAGCGGGCTGAGGAGATTGGTGC
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