CV885270

Overview
NameCV885270
Unique NameCV885270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length395
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885270 vs. ExPASy Swiss-Prot
Match: METK1_ATRNU (S-adenosylmethionine synthetase 1 OS=Atriplex nummularia GN=SAMS1 PE=1 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 1.382e-57
Identity = 105/119 (88.24%), Postives = 113/119 (94.96%), Query Frame = 1
Query:   37 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIG 393
            ++TFLFTSESVNEGHPDKLCDQ+SDAVLDACLAQDP+SKVACETCTKTN+VMVFGEITTKANVDYEKIVR TCR IGF S DVGLDAD+CKVLV IEQQSPDIAQGVHGHL++R EEIG
Sbjct:    5 VDTFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPESKVACETCTKTNLVMVFGEITTKANVDYEKIVRQTCRDIGFVSADVGLDADNCKVLVYIEQQSPDIAQGVHGHLSRRPEEIG 123          
BLAST of CV885270 vs. ExPASy Swiss-Prot
Match: METK2_DIACA (S-adenosylmethionine synthetase 2 OS=Dianthus caryophyllus GN=SAM2 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 4.020e-57
Identity = 105/118 (88.98%), Postives = 111/118 (94.07%), Query Frame = 1
Query:   40 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIG 393
            +TFLFTSESVNEGHPDKLCDQ+SDAVLDACLAQD +SKVACETCTKTN+VMVFGEITTKANVDYEKIV DTCR IGF S DVGLDAD+CKVLV IEQQSPDIAQGVHGHLTKR E+IG
Sbjct:    6 DTFLFTSESVNEGHPDKLCDQISDAVLDACLAQDAESKVACETCTKTNLVMVFGEITTKANVDYEKIVADTCREIGFVSPDVGLDADNCKVLVYIEQQSPDIAQGVHGHLTKRPEDIG 123          
BLAST of CV885270 vs. ExPASy Swiss-Prot
Match: METK4_BRAJU (S-adenosylmethionine synthetase 4 OS=Brassica juncea GN=MSAMS4 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 5.251e-57
Identity = 105/119 (88.24%), Postives = 109/119 (91.60%), Query Frame = 1
Query:   37 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIG 393
            METFLFTSESVNEGHPDKLCDQVSDA+LDACL QDP+SKVACETCTKTNMVMVFGEITT A VDYEKIVR TCR IGF S DVGLDAD C VLVNIEQQSPDIAQGVHGHLTK+ E+IG
Sbjct:    1 METFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTSAKVDYEKIVRSTCREIGFISADVGLDADKCNVLVNIEQQSPDIAQGVHGHLTKKPEDIG 119          
BLAST of CV885270 vs. ExPASy Swiss-Prot
Match: METK2_ATRNU (S-adenosylmethionine synthetase 2 OS=Atriplex nummularia GN=SAMS2 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 5.251e-57
Identity = 104/119 (87.39%), Postives = 113/119 (94.96%), Query Frame = 1
Query:   37 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIG 393
            ++TFLFTSESVNEGHPDKLCDQ+SDAVLDACLAQDP+SKVACETCTKTN+VMVFGEITTKA+VDYEKIVR TCR IGF S DVGLDAD+CKVLV IEQQSPDIAQGVHGHL++R EEIG
Sbjct:    5 VDTFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPESKVACETCTKTNLVMVFGEITTKADVDYEKIVRQTCRDIGFVSADVGLDADNCKVLVYIEQQSPDIAQGVHGHLSRRPEEIG 123          
BLAST of CV885270 vs. ExPASy Swiss-Prot
Match: METK3_ARATH (S-adenosylmethionine synthetase 3 OS=Arabidopsis thaliana GN=METK3 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 8.956e-57
Identity = 104/119 (87.39%), Postives = 109/119 (91.60%), Query Frame = 1
Query:   37 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIG 393
            METFLFTSESVNEGHPDKLCDQ+SDA+LDACL QDP+SKVACETCTKTNMVMVFGEITT A VDYEKIVR TCR IGF S DVGLDAD C VLVNIEQQSPDIAQGVHGHLTK+ E+IG
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKTNMVMVFGEITTAAKVDYEKIVRSTCREIGFISADVGLDADKCNVLVNIEQQSPDIAQGVHGHLTKKPEDIG 119          
BLAST of CV885270 vs. ExPASy Swiss-Prot
Match: METK_CHLRE (S-adenosylmethionine synthetase OS=Chlamydomonas reinhardtii GN=METM PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 6.642e-52
Identity = 97/119 (81.51%), Postives = 105/119 (88.24%), Query Frame = 1
Query:   37 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIG 393
            +E+FL+TSESVNEGHPDK+CDQVSDAVLDACL QDPDSKVACETC KT MVMVFGEITTKA VDYE IVR  C+ IGFTS+DVGLDAD CKVLV+IE+QSPDI QGVHG  TK  EEIG
Sbjct:    4 LESFLYTSESVNEGHPDKICDQVSDAVLDACLEQDPDSKVACETCCKTGMVMVFGEITTKAKVDYEAIVRKVCKEIGFTSEDVGLDADKCKVLVHIEEQSPDIGQGVHGMGTKALEEIG 122          
BLAST of CV885270 vs. ExPASy Swiss-Prot
Match: METK_OSTLU (S-adenosylmethionine synthetase OS=Ostreococcus lucimarinus (strain CCE9901) GN=METK-1 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 8.402e-47
Identity = 87/116 (75.00%), Postives = 96/116 (82.76%), Query Frame = 1
Query:   46 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIG 393
            FLFTSESVNEGHPDKL DQ+SD +LDACLAQDPDSKVACET TKTNMVMVFGEITTKA VDYE +VR  CR +GF SD+ GLD + C+VLV +  QSPDI QGVHG  TK  E+IG
Sbjct:    3 FLFTSESVNEGHPDKLADQISDGILDACLAQDPDSKVACETATKTNMVMVFGEITTKAKVDYEAVVRQVCRDVGFISDETGLDGNKCRVLVELHDQSPDIGQGVHGMGTKSDEDIG 118          
BLAST of CV885270 vs. ExPASy Swiss-Prot
Match: METK_OSTTA (S-adenosylmethionine synthetase OS=Ostreococcus tauri GN=METK PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.445e-46
Identity = 86/116 (74.14%), Postives = 96/116 (82.76%), Query Frame = 1
Query:   46 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIG 393
            FLFTSESVNEGHPDKL DQ+SD +LDACL QDPDSKVACET TKTNMVMVFGEITTKA VDYE +VR  CR +GF S++ GLD ++C+VLV +  QSPDI QGVHG  TK  EEIG
Sbjct:    3 FLFTSESVNEGHPDKLADQISDGILDACLEQDPDSKVACETATKTNMVMVFGEITTKAKVDYEAVVRQVCRDVGFISNETGLDGNNCRVLVELHDQSPDIGQGVHGMGTKSLEEIG 118          
BLAST of CV885270 vs. ExPASy Swiss-Prot
Match: METK3_ACTCH (S-adenosylmethionine synthetase 3 (Fragment) OS=Actinidia chinensis GN=SAM3 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.653e-42
Identity = 80/86 (93.02%), Postives = 83/86 (96.51%), Query Frame = 1
Query:  136 QDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIG 393
            QDPDSKVACETCTKTNMVMVFGEITTK N+DYEKIVRDTCR+IGF SDDVGLDAD+CKVLVNIEQQSPDIAQGVHGHLTKR EEIG
Sbjct:    1 QDPDSKVACETCTKTNMVMVFGEITTKGNIDYEKIVRDTCRNIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 86          
BLAST of CV885270 vs. ExPASy Swiss-Prot
Match: METK1_PEA (S-adenosylmethionine synthetase 1 (Fragment) OS=Pisum sativum GN=SAMS1 PE=2 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 8.138e-42
Identity = 80/92 (86.96%), Postives = 86/92 (93.48%), Query Frame = 1
Query:  118 LDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIG 393
            +DACL QD DSKVACETCTKTN+VMVFGEITTKANVDYEKIVR+TCR+IGF S DVGLDAD+CKVLVNIEQQSPDIAQGVHGH TK+ EEIG
Sbjct:    3 VDACLEQDSDSKVACETCTKTNLVMVFGEITTKANVDYEKIVRNTCRNIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHFTKKPEEIG 94          
The following BLAST results are available for this feature:
BLAST of CV885270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK1_ATRNU1.382e-5788.24S-adenosylmethionine synthetase 1 OS=Atriplex numm... [more]
METK2_DIACA4.020e-5788.98S-adenosylmethionine synthetase 2 OS=Dianthus cary... [more]
METK4_BRAJU5.251e-5788.24S-adenosylmethionine synthetase 4 OS=Brassica junc... [more]
METK2_ATRNU5.251e-5787.39S-adenosylmethionine synthetase 2 OS=Atriplex numm... [more]
METK3_ARATH8.956e-5787.39S-adenosylmethionine synthetase 3 OS=Arabidopsis t... [more]
METK_CHLRE6.642e-5281.51S-adenosylmethionine synthetase OS=Chlamydomonas r... [more]
METK_OSTLU8.402e-4775.00S-adenosylmethionine synthetase OS=Ostreococcus lu... [more]
METK_OSTTA2.445e-4674.14S-adenosylmethionine synthetase OS=Ostreococcus ta... [more]
METK3_ACTCH3.653e-4293.02S-adenosylmethionine synthetase 3 (Fragment) OS=Ac... [more]
METK1_PEA8.138e-4286.96S-adenosylmethionine synthetase 1 (Fragment) OS=Pi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013F10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885270 ID=CV885270; Name=CV885270; organism=Citrus sinensis; type=EST; length=395bp
AGTAAACTGCAGCTTCGGTTAATCAAATTAAAGAAAATGGAAACATTTCT
TTTCACATCAGAATCAGTGAACGAGGGTCACCCGGACAAGCTGTGTGACC
AAGTTTCGGACGCAGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGC
AAAGTTGCATGTGAAACATGCACAAAGACCAACATGGTCATGGTTTTTGG
AGAAATTACAACCAAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATA
CATGCAGATCGATTGGGTTCACATCGGACGATGTGGGGCTTGATGCTGAT
CACTGCAAAGTTCTTGTTAATATTGAGCAGCAGAGCCCTGACATTGCTCA
GGGTGTTCATGGGCATCTCACAAAGCGGGCTGAGGAGATTGGTGC
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