CV885257

Overview
NameCV885257
Unique NameCV885257
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.441e-36
Identity = 79/179 (44.13%), Postives = 114/179 (63.69%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDI-----KQRLAESDSKS 717
            L K++LIGDSGVGKS +L R                    RT++++GK +K QIWDTAGQER+R IT+AYYRGA+G LLVYD+T   +F+N++ W+R +  HA  N+  ++ GNK+D+ +  RAV    GQALA++ G+ F ETSA   +N+E+ F +I  +I     K+ LA  ++ S
Sbjct:   12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDL-KHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKALAAQEASS 189          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.193e-36
Identity = 80/163 (49.08%), Postives = 103/163 (63.19%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDI 684
            L K +LIGDSGVGKS LL+R                    R I LD K+IK QIWDTAGQER+R IT+AYYRGA+G L+VYD+T +SSF+N+  W++ + +HA  N+  +LVGNK D+    RAV T + QA A E  + F ETSA    NVEE F ++  +I
Sbjct:   10 LFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDL-LHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEI 171          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 4.193e-36
Identity = 82/194 (42.27%), Postives = 115/194 (59.28%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLA--------ESDSKSEPQTIKINQPDT 753
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I + ++        E+D       + I+ P T
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPT 203          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 4.193e-36
Identity = 82/194 (42.27%), Postives = 115/194 (59.28%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLA--------ESDSKSEPQTIKINQPDT 753
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I + ++        E+D       + I+ P T
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPT 203          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 4.193e-36
Identity = 82/194 (42.27%), Postives = 115/194 (59.28%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLA--------ESDSKSEPQTIKINQPDT 753
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I + ++        E+D       + I+ P T
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPT 203          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RB11A_PIG (Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 4.193e-36
Identity = 82/194 (42.27%), Postives = 115/194 (59.28%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLA--------ESDSKSEPQTIKINQPDT 753
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I + ++        E+D       + I+ P T
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPT 203          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 4.193e-36
Identity = 82/194 (42.27%), Postives = 115/194 (59.28%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLA--------ESDSKSEPQTIKINQPDT 753
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I + ++        E+D       + I+ P T
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPT 203          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 4.193e-36
Identity = 82/194 (42.27%), Postives = 115/194 (59.28%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLA--------ESDSKSEPQTIKINQPDT 753
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I + ++        E+D       + I+ P T
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPT 203          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RB11A_CHICK (Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.193e-36
Identity = 82/194 (42.27%), Postives = 115/194 (59.28%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLA--------ESDSKSEPQTIKINQPDT 753
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I + ++        E+D       + I+ P T
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPT 203          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 4.193e-36
Identity = 82/194 (42.27%), Postives = 115/194 (59.28%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLA--------ESDSKSEPQTIKINQPDT 753
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I + ++        E+D       + I+ P T
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPT 203          
The following BLAST results are available for this feature:
BLAST of CV885257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB2BV_BETVU1.441e-3644.13Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
YPT3_SCHPO4.193e-3649.08GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RB11A_RAT4.193e-3642.27Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]
RB11A_RABIT4.193e-3642.27Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]
RB11A_PONAB4.193e-3642.27Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]
RB11A_PIG4.193e-3642.27Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11... [more]
RB11A_MOUSE4.193e-3642.27Ras-related protein Rab-11A OS=Mus musculus GN=Rab... [more]
RB11A_HUMAN4.193e-3642.27Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
RB11A_CHICK4.193e-3642.27Ras-related protein Rab-11A OS=Gallus gallus GN=RA... [more]
RB11A_CANFA4.193e-3642.27Ras-related protein Rab-11A OS=Canis familiaris GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013F02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885257 ID=CV885257; Name=CV885257; organism=Citrus sinensis; type=EST; length=792bp
GAGAGAGAGAGGAGAGACCAAGTCCCCCCCCCCCACGCACGCACGGACTC
TCTGTTCACAAGCAATCTCTCCCATGTTACCGGCGACTTGTTAAATCTTC
TCACCCTTACAGTTTCAGAAAGAGAGTAATTGATTTGTTGTGAGAGAGAA
GAGATGGCTGCACCACCAGCGAGGGCACGTGCTGATTATGATTACCTCAT
CAAGCTTCTTTTGATCGGTGACAGCGGTGTGGGGAAGAGTTGTTTGCTTC
TGCGATTTTCAGACGGTTCCTTCACAACCAGTTTTATTACTACTATTGGC
ATTGATTTTAAGATAAGAACCATCGAGCTTGATGGAAAACGGATTAAATT
GCAAATTTGGGATACAGCTGGTCAGGAACGGTTTCGAACCATCACAACAG
CTTACTACCGTGGAGCCATGGGGATTTTGCTGGTGTATGATGTTACTGAC
GAGTCATCTTTCAACAATATTAGGAACTGGATTCGCAACATTGAACAGCA
TGCTTCTGACAATGTCAACAAGATACTTGTTGGGAACAAGGCTGACATGG
ATGAGAGCAAAAGGGCTGTGCCTACTTCAAAGGGTCAAGCACTTGCTGAT
GAGTATGGTATCAAGTTCTTTGAAACTAGTGCAAAAACTAATTTGAATGT
GGAGGAGGTTTTCTTTTCAATTGCCAAGGATATCAAGCAAAGACTTGCAG
AATCAGATTCTAAATCTGAGCCTCAGACAATTAAAATTAACCAACCAGAT
ACCGGAGCAAGTGGCGCTCAAGCTGCCCAGAAGTCAGCTTGC
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