CV885257

Overview
NameCV885257
Unique NameCV885257
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.173e-54
Identity = 106/177 (59.89%), Postives = 135/177 (76.27%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDSKSEPQ 726
            L KLLLIGDSGVGK+CLL R                  KIRT+ELDGK+IKLQIWDTAGQERFRTITTAYYRGAMGI+ VYD+T+E SF+NI+NWIRNIE+HAS +V ++++GNK DM+E KR V   +G+ LA +YGIKF ETSAK+++NVEE F ++A+DI  +L +  +++  Q
Sbjct:    8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNE-KRQVSKERGEKLAIDYGIKFLETSAKSSINVEEAFITLARDIMTKLNKKMNENSLQ 183          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 206.838 bits (525), Expect = 1.098e-52
Identity = 105/183 (57.38%), Postives = 133/183 (72.68%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAE--SDSKSEPQTIKI 738
            L KLLLIGDSGVGKSCLLLR                  KIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTDE SFNN++ W+  I+++ASDNVNK+LVGNK+D+ E+ RA+P    +A ADE GI F ETSAK   NVE+ F +++  IK+R+A   + + + P T++I
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTEN-RAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGNNARPPTVQI 189          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.196e-52
Identity = 98/175 (56.00%), Postives = 130/175 (74.29%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDSKSE 720
            L KLLLIGDSGVGK+C+L R                  KI+T+EL GK+IKLQIWDTAGQERF TITT+YYRGAMGI+LVYD+T+  SF NI  W+RNI++HA+++V ++L+GNK DMD+ KR VP  KG+ +A E+GI+FFETSAK N+N+E+ F ++A+DI ++    +  SE
Sbjct:    9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDD-KRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSE 182          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.196e-52
Identity = 98/175 (56.00%), Postives = 130/175 (74.29%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDSKSE 720
            L KLLLIGDSGVGK+C+L R                  KI+T+EL GK+IKLQIWDTAGQERF TITT+YYRGAMGI+LVYD+T+  SF NI  W+RNI++HA+++V ++L+GNK DMD+ KR VP  KG+ +A E+GI+FFETSAK N+N+E+ F ++A+DI ++    +  SE
Sbjct:    9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDD-KRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSE 182          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.196e-52
Identity = 98/175 (56.00%), Postives = 130/175 (74.29%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDSKSE 720
            L KLLLIGDSGVGK+C+L R                  KI+T+EL GK+IKLQIWDTAGQERF TITT+YYRGAMGI+LVYD+T+  SF NI  W+RNI++HA+++V ++L+GNK DMD+ KR VP  KG+ +A E+GI+FFETSAK N+N+E+ F ++A+DI ++    +  SE
Sbjct:    9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDD-KRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSE 182          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.196e-52
Identity = 98/175 (56.00%), Postives = 130/175 (74.29%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDSKSE 720
            L KLLLIGDSGVGK+C+L R                  KI+T+EL GK+IKLQIWDTAGQERF TITT+YYRGAMGI+LVYD+T+  SF NI  W+RNI++HA+++V ++L+GNK DMD+ KR VP  KG+ +A E+GI+FFETSAK N+N+E+ F ++A+DI ++    +  SE
Sbjct:    9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDD-KRVVPKGKGEQIAREHGIRFFETSAKVNINIEKAFLTLAEDILRKTPVKEPNSE 182          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.174e-52
Identity = 98/175 (56.00%), Postives = 130/175 (74.29%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDSKSE 720
            L KLLLIGDSGVGK+C+L R                  KI+T+EL GK+IKLQIWDTAGQERF TITT+YYRGAMGI+LVYD+T+  SF NI  W+RNI++HA+++V ++L+GNK DM E KR VP +KG+ +A E+GI+FFETSAK N+N+E+ F ++A+DI ++    +  SE
Sbjct:    9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDLKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDM-EDKRVVPKAKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSE 182          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 1.214e-51
Identity = 105/183 (57.38%), Postives = 133/183 (72.68%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAE--SDSKSEPQTIKI 738
            L KLLLIGDSGVGKSCLLLR                  KIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++AS+NVNK+LVGNK D+ E+ R V    G+ALADE GI F ETSAK   NVE+ F ++A +IK R+A   + + S+P T+++
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAEN-RVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQPATNASKPATVQM 189          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.614e-51
Identity = 103/183 (56.28%), Postives = 130/183 (71.04%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAE--SDSKSEPQTIKI 738
            L KLLLIGDSGVGKSCLLLR                  KIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++ASDNVNK+LVGNK+D+  +K  V T   +A ADE GI F ETSAK   NV++ F ++A  IK R+A   + + + P T++I
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANK-VVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASIKDRMASQPAAANARPATVQI 189          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.614e-51
Identity = 106/184 (57.61%), Postives = 130/184 (70.65%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDSKSEPQTIKINQP 747
            L KLLLIGDSGVGKSCLLLR                  KIRT+ELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++AS+NVNK+LVGNK+D+  SK+ V  S  +A ADE GI F ETSAK   NVE+ F ++A +IK R+A     S+P   K   P
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDL-TSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMA-----SQPIPTKAGGP 185          
The following BLAST results are available for this feature:
BLAST of CV885257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8_DISOM1.173e-5459.89Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RBD2A_ARATH1.098e-5257.38Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
RAB10_PONAB3.196e-5256.00Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE3.196e-5256.00Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN3.196e-5256.00Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
RAB10_CANFA3.196e-5256.00Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]
RAB10_CHICK4.174e-5256.00Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]
RIC1_ORYSJ1.214e-5157.38Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
YPTM2_MAIZE4.614e-5156.28GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
YPTC1_CHLRE4.614e-5157.61GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013F02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885257 ID=CV885257; Name=CV885257; organism=Citrus sinensis; type=EST; length=792bp
GAGAGAGAGAGGAGAGACCAAGTCCCCCCCCCCCACGCACGCACGGACTC
TCTGTTCACAAGCAATCTCTCCCATGTTACCGGCGACTTGTTAAATCTTC
TCACCCTTACAGTTTCAGAAAGAGAGTAATTGATTTGTTGTGAGAGAGAA
GAGATGGCTGCACCACCAGCGAGGGCACGTGCTGATTATGATTACCTCAT
CAAGCTTCTTTTGATCGGTGACAGCGGTGTGGGGAAGAGTTGTTTGCTTC
TGCGATTTTCAGACGGTTCCTTCACAACCAGTTTTATTACTACTATTGGC
ATTGATTTTAAGATAAGAACCATCGAGCTTGATGGAAAACGGATTAAATT
GCAAATTTGGGATACAGCTGGTCAGGAACGGTTTCGAACCATCACAACAG
CTTACTACCGTGGAGCCATGGGGATTTTGCTGGTGTATGATGTTACTGAC
GAGTCATCTTTCAACAATATTAGGAACTGGATTCGCAACATTGAACAGCA
TGCTTCTGACAATGTCAACAAGATACTTGTTGGGAACAAGGCTGACATGG
ATGAGAGCAAAAGGGCTGTGCCTACTTCAAAGGGTCAAGCACTTGCTGAT
GAGTATGGTATCAAGTTCTTTGAAACTAGTGCAAAAACTAATTTGAATGT
GGAGGAGGTTTTCTTTTCAATTGCCAAGGATATCAAGCAAAGACTTGCAG
AATCAGATTCTAAATCTGAGCCTCAGACAATTAAAATTAACCAACCAGAT
ACCGGAGCAAGTGGCGCTCAAGCTGCCCAGAAGTCAGCTTGC
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