CV885257

Overview
NameCV885257
Unique NameCV885257
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.027e-51
Identity = 102/187 (54.55%), Postives = 136/187 (72.73%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDI--KQRLAESDSKSEPQTIKINQPD 750
            L KLLLIGDSGVGK+CL++R                  KIRT+E++GKRIKLQ+WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+GNK DM E+KR V   +   LA E+GI+FFETSAK+++NV+E F S+A+DI  K     S + S+P +  +   D
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRKVLKEQADKLAREHGIRFFETSAKSSMNVDEAFNSLARDILLKSGGRRSGNHSKPSSTDLKPSD 193          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.343e-50
Identity = 106/186 (56.99%), Postives = 134/186 (72.04%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRL----AESDSKSEPQTIKIN 741
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK+D+  +K+ V  +  +  AD+ GI F ETSAK   NVE+ F ++A +IK R+    A SDSK    ++KIN
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEIKNRMGPITAASDSK---PSVKIN 192          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.290e-50
Identity = 101/176 (57.39%), Postives = 125/176 (71.02%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDSKSEP 723
            L KLLLIGDSGVGKSCLLLR                  KIRT+ELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++AS+NVNK+LVGNK+D+   K+ V     +A ADE GI F ETSAK   NVE+ F ++A +IK R+A      +P
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDL-TGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPVPPKP 182          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 2.290e-50
Identity = 101/187 (54.01%), Postives = 136/187 (72.73%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDI--KQRLAESDSKSEPQTIKINQPD 750
            L KLLLIGDSGVGK+CL++R                  KIRT+E++GKRIKLQ+WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+GNK DM E+KR V   + + LA E+ I+FFETSAK+++NV+E F S+A+DI  K     S + S+P +  +   D
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRKVQREQAERLAREHRIRFFETSAKSSVNVDEAFSSLARDILLKTGGRRSGNSSKPSSTDLKVSD 193          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.991e-50
Identity = 96/166 (57.83%), Postives = 125/166 (75.30%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQR 693
            L KLLLIGDSGVGK+C+L R                  KI+T+EL GK+IKLQIWDTAGQERF TITT+YYRGAMGI+LVYD+T+  SF NI  W+RNI++HA+++V ++L+GNK DM E KR V  SKG+ +A E+ I+FFETSAK N+N+E+ F ++A+DI Q+
Sbjct:    9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDM-EDKRVVLKSKGEQIAREHAIRFFETSAKANINIEKAFLTLAEDILQK 173          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.102e-50
Identity = 100/187 (53.48%), Postives = 136/187 (72.73%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDI--KQRLAESDSKSEPQTIKINQPD 750
            L KLLLIGDSGVGK+CL++R                  KIRT++++GKRIKLQ+WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+GNK DM E+KR V   + + LA E+ I+FFETSAK+++NV+E F S+A+DI  K     S + S+P +  +   D
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRQVQREQAEKLAREHRIRFFETSAKSSVNVDEAFSSLARDILLKTGGRRSGTNSKPSSTGLKTSD 193          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.102e-50
Identity = 95/163 (58.28%), Postives = 127/163 (77.91%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDI 684
            L KLLLIGDSGVGK+CL++R                  KIRT++++GK+IKLQ+WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+GNK DM E+KR V   +   LA E+GI+FFETSAK+++NV+E F S+A+DI
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB10_RAT (Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 6.663e-50
Identity = 96/175 (54.86%), Postives = 126/175 (72.00%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDSKSE 720
            L KLLLIGDSGVGK+C+L R                  KI+T+EL GK+IKLQIWDTAGQERF TITT+YYRGAMGI+LVYD+T+  SF NI  W+RNI+QHA+++V ++L+ NK DMD  KR VP  KG+ +A E+ I+FFETSAK N+N+E+ F ++ +DI ++    +  SE
Sbjct:    9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIEIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDQHANEDVERMLLRNKCDMDH-KRVVPKGKGEQIAREHRIRFFETSAKANINIEKAFLTLPEDILRKTPVKEPNSE 182          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.137e-49
Identity = 100/186 (53.76%), Postives = 128/186 (68.82%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDSKSEPQTIKINQPDT 753
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+    +    +   +N   T
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSGGSEKSNVNIQST 192          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.137e-49
Identity = 94/163 (57.67%), Postives = 127/163 (77.91%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDI 684
            L KLLLIGDSGVGK+CL++R                  +IRT++++GK+IKLQ+WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+GNK DM E+KR V   +   LA E+GI+FFETSAK+++NV+E F S+A+DI
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169          
The following BLAST results are available for this feature:
BLAST of CV885257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB13_MESAU6.027e-5154.55Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
RAB1A_LYMST1.343e-5056.99Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
YPTV1_VOLCA2.290e-5057.39GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
RAB13_RAT2.290e-5054.01Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]
RAB10_DISOM2.991e-5057.83Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
RAB13_MOUSE5.102e-5053.48Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]
RAB13_HUMAN5.102e-5058.28Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RAB10_RAT6.663e-5054.86Ras-related protein Rab-10 OS=Rattus norvegicus GN... [more]
RAB1_DISOM1.137e-4953.76Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RAB13_BOVIN1.137e-4957.67Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013F02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885257 ID=CV885257; Name=CV885257; organism=Citrus sinensis; type=EST; length=792bp
GAGAGAGAGAGGAGAGACCAAGTCCCCCCCCCCCACGCACGCACGGACTC
TCTGTTCACAAGCAATCTCTCCCATGTTACCGGCGACTTGTTAAATCTTC
TCACCCTTACAGTTTCAGAAAGAGAGTAATTGATTTGTTGTGAGAGAGAA
GAGATGGCTGCACCACCAGCGAGGGCACGTGCTGATTATGATTACCTCAT
CAAGCTTCTTTTGATCGGTGACAGCGGTGTGGGGAAGAGTTGTTTGCTTC
TGCGATTTTCAGACGGTTCCTTCACAACCAGTTTTATTACTACTATTGGC
ATTGATTTTAAGATAAGAACCATCGAGCTTGATGGAAAACGGATTAAATT
GCAAATTTGGGATACAGCTGGTCAGGAACGGTTTCGAACCATCACAACAG
CTTACTACCGTGGAGCCATGGGGATTTTGCTGGTGTATGATGTTACTGAC
GAGTCATCTTTCAACAATATTAGGAACTGGATTCGCAACATTGAACAGCA
TGCTTCTGACAATGTCAACAAGATACTTGTTGGGAACAAGGCTGACATGG
ATGAGAGCAAAAGGGCTGTGCCTACTTCAAAGGGTCAAGCACTTGCTGAT
GAGTATGGTATCAAGTTCTTTGAAACTAGTGCAAAAACTAATTTGAATGT
GGAGGAGGTTTTCTTTTCAATTGCCAAGGATATCAAGCAAAGACTTGCAG
AATCAGATTCTAAATCTGAGCCTCAGACAATTAAAATTAACCAACCAGAT
ACCGGAGCAAGTGGCGCTCAAGCTGCCCAGAAGTCAGCTTGC
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