CV885257

Overview
NameCV885257
Unique NameCV885257
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.641e-48
Identity = 100/183 (54.64%), Postives = 130/183 (71.04%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAE-SDSKSEPQTIKIN 741
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LVGNK+D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+   + S  E   +KI+
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKID 189          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.143e-48
Identity = 99/183 (54.10%), Postives = 130/183 (71.04%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAE-SDSKSEPQTIKIN 741
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LVGNK+D+  +K+ V  +  +  AD  G+ F ETSAK   NVE+ F ++A +IK+R+   + S  E   +KI+
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKID 189          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.799e-48
Identity = 97/170 (57.06%), Postives = 122/170 (71.76%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAES 705
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK +KLQIWDTAGQERFRTIT++YYRGA GI +VYDVTD  SFNN++ W++ I+++A++ VNK+LVGNK+DM + K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A+ IK+R+  S
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDMTD-KKVVEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTMARQIKERMGSS 176          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.799e-48
Identity = 98/183 (53.55%), Postives = 130/183 (71.04%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAE-SDSKSEPQTIKIN 741
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRT+T++YYRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LVGNK+D+  +K+ V  +  +  AD  G+ F ETSAK   NVE+ F ++A +IK+R+   + S  E   +KI+
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKID 189          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.799e-48
Identity = 100/183 (54.64%), Postives = 129/183 (70.49%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAE-SDSKSEPQTIKIN 741
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD  S+ N++ W++ I+++AS+NVNK+LVGNK+D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+   + S  E   +KI+
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKID 189          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: SEC4_YEAST (Ras-related protein SEC4 OS=Saccharomyces cerevisiae GN=SEC4 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.237e-48
Identity = 91/167 (54.49%), Postives = 124/167 (74.25%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRL 696
            ++K+LLIGDSGVGKSCLL+R                  KI+T++++GK++KLQ+WDTAGQERFRTITTAYYRGAMGI+LVYDVTDE +F NI+ W + + +HA+D    +LVGNK+DM+   R V   +G+ALA E GI F E+SAK + NV E+FF++AK I++++
Sbjct:   20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: SEC4_CANGA (Ras-related protein SEC4 OS=Candida glabrata GN=SEC4 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.145e-48
Identity = 94/180 (52.22%), Postives = 131/180 (72.78%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDSKSEPQTIK 735
            ++K+LLIGDSGVGKSCLL+R                  KI+T++++GK++KLQ+WDTAGQERFRTITTAYYRGAMGI+LVYDVTDE +F NI+ W + + +HA+D    +LVGNK+DMD   R V   +G+ALA E G+ F E+SAK + NV E+FF++A+ I++++ +S+  S P + K
Sbjct:   20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFANIKQWFKTVNEHANDEAQLLLVGNKSDMD--TRVVTYEQGEALAKELGLPFIESSAKNDDNVNEIFFTLARLIQEKI-DSNKLSGPNSGK 196          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 1.064e-47
Identity = 98/183 (53.55%), Postives = 127/183 (69.40%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDSKSEPQTIKINQ 744
            L KLLLIGDS VGKSC LLR                  KIRT+E++GK +KLQIWDTAGQERFRTIT++YYRGA GI++VYD+TD  SFNN++ W+  I+++A+D+V K+LVGNK D+ E+ RAV TS  QA A E GI F ETSAK ++NVEE F +++  IK+  A S +  E +   + Q
Sbjct:    8 LFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAEN-RAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAALERKPSNVVQ 189          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.815e-47
Identity = 99/183 (54.10%), Postives = 129/183 (70.49%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAE-SDSKSEPQTIKIN 741
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQER RTIT++YYRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LVGNK+D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+   + S  E   +KI+
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKID 189          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 2.370e-47
Identity = 95/185 (51.35%), Postives = 129/185 (69.73%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESD--SKSEPQTIKINQ 744
            L KLLLIGDSGVGKSCLLLR                  KIRT EL+GK +KLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++A + VN++LVGNK+DM + K+ V  S  +  AD   I F ETSAK + NVE+ F ++++ IK+R+  +   S +   ++K+ Q
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVD-KKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASSNAKSSVKVGQ 191          
The following BLAST results are available for this feature:
BLAST of CV885257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1B_BOVIN1.641e-4854.64Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]
RAB1B_MOUSE2.143e-4854.10Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]
YPT1_NEUCR2.799e-4857.06GTP-binding protein ypt1 OS=Neurospora crassa GN=y... [more]
RAB1B_RAT2.799e-4853.55Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]
RAB1B_MACFA2.799e-4854.64Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
SEC4_YEAST6.237e-4854.49Ras-related protein SEC4 OS=Saccharomyces cerevisi... [more]
SEC4_CANGA8.145e-4852.22Ras-related protein SEC4 OS=Candida glabrata GN=SE... [more]
YPTM1_MAIZE1.064e-4753.55GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RAB1B_PIG1.815e-4754.10Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]
YPT1_SCHPO2.370e-4751.35GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013F02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885257 ID=CV885257; Name=CV885257; organism=Citrus sinensis; type=EST; length=792bp
GAGAGAGAGAGGAGAGACCAAGTCCCCCCCCCCCACGCACGCACGGACTC
TCTGTTCACAAGCAATCTCTCCCATGTTACCGGCGACTTGTTAAATCTTC
TCACCCTTACAGTTTCAGAAAGAGAGTAATTGATTTGTTGTGAGAGAGAA
GAGATGGCTGCACCACCAGCGAGGGCACGTGCTGATTATGATTACCTCAT
CAAGCTTCTTTTGATCGGTGACAGCGGTGTGGGGAAGAGTTGTTTGCTTC
TGCGATTTTCAGACGGTTCCTTCACAACCAGTTTTATTACTACTATTGGC
ATTGATTTTAAGATAAGAACCATCGAGCTTGATGGAAAACGGATTAAATT
GCAAATTTGGGATACAGCTGGTCAGGAACGGTTTCGAACCATCACAACAG
CTTACTACCGTGGAGCCATGGGGATTTTGCTGGTGTATGATGTTACTGAC
GAGTCATCTTTCAACAATATTAGGAACTGGATTCGCAACATTGAACAGCA
TGCTTCTGACAATGTCAACAAGATACTTGTTGGGAACAAGGCTGACATGG
ATGAGAGCAAAAGGGCTGTGCCTACTTCAAAGGGTCAAGCACTTGCTGAT
GAGTATGGTATCAAGTTCTTTGAAACTAGTGCAAAAACTAATTTGAATGT
GGAGGAGGTTTTCTTTTCAATTGCCAAGGATATCAAGCAAAGACTTGCAG
AATCAGATTCTAAATCTGAGCCTCAGACAATTAAAATTAACCAACCAGAT
ACCGGAGCAAGTGGCGCTCAAGCTGCCCAGAAGTCAGCTTGC
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