CV885257

Overview
NameCV885257
Unique NameCV885257
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB3A_HUMAN (Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3A PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.665e-40
Identity = 82/176 (46.59%), Postives = 117/176 (66.48%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDSKSEP 723
            + K+L+IG+S VGK+  L R                  K++TI  + KRIKLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LVGNK DM E +R V + +G+ LAD  G +FFE SAK N+NV++ F  +   I ++++ES   ++P
Sbjct:   22 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADP 196          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB3A_BOVIN (Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A PE=1 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 3.665e-40
Identity = 82/176 (46.59%), Postives = 117/176 (66.48%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDSKSEP 723
            + K+L+IG+S VGK+  L R                  K++TI  + KRIKLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LVGNK DM E +R V + +G+ LAD  G +FFE SAK N+NV++ F  +   I ++++ES   ++P
Sbjct:   22 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADP 196          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB35_RAT (Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.665e-40
Identity = 88/187 (47.06%), Postives = 119/187 (63.64%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDI----KQRLAESDSKSEPQTIKINQ 744
            L KLL+IGDSGVGKS LLLR                  KIRT+E++G+++KLQIWDTAGQERFRTIT+ YYRG  G+++VYDVT   SF N++ W+  I Q+  D+V +ILVGNK D D  ++ V T      A + GI+ FETSAK N+NVEE+F  I + +    K  LA+   + +   +K+ +
Sbjct:    8 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKND-DPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLTK 192          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB35_MOUSE (Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.665e-40
Identity = 88/187 (47.06%), Postives = 119/187 (63.64%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDI----KQRLAESDSKSEPQTIKINQ 744
            L KLL+IGDSGVGKS LLLR                  KIRT+E++G+++KLQIWDTAGQERFRTIT+ YYRG  G+++VYDVT   SF N++ W+  I Q+  D+V +ILVGNK D D  ++ V T      A + GI+ FETSAK N+NVEE+F  I + +    K  LA+   + +   +K+ +
Sbjct:    8 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKND-DPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLTK 192          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB35_HUMAN (Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.665e-40
Identity = 88/187 (47.06%), Postives = 119/187 (63.64%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDI----KQRLAESDSKSEPQTIKINQ 744
            L KLL+IGDSGVGKS LLLR                  KIRT+E++G+++KLQIWDTAGQERFRTIT+ YYRG  G+++VYDVT   SF N++ W+  I Q+  D+V +ILVGNK D D  ++ V T      A + GI+ FETSAK N+NVEE+F  I + +    K  LA+   + +   +K+ +
Sbjct:    8 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKND-DPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLTK 192          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB3C_HUMAN (Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3C PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.786e-40
Identity = 82/170 (48.24%), Postives = 114/170 (67.06%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAES 705
            + KLL+IG+S VGK+  L R                  K++T+  + KRIKLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   ILVGNK DM E +R + T +GQ L ++ G +FFETSAK N+NV++ F  +   I  +++ES
Sbjct:   30 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDM-EDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSES 198          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB3C_BOVIN (Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C PE=2 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 4.786e-40
Identity = 82/170 (48.24%), Postives = 114/170 (67.06%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAES 705
            + KLL+IG+S VGK+  L R                  K++T+  + KRIKLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   ILVGNK DM E +R + T +GQ L ++ G +FFETSAK N+NV++ F  +   I  +++ES
Sbjct:   30 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDM-EDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSES 198          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB3B_MOUSE (Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.251e-40
Identity = 81/170 (47.65%), Postives = 113/170 (66.47%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAES 705
            + KLL+IG+S VGK+  L R                  K++T+    KR+KLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   ILVGNK DM+E +R VPT KG+ LA++ G  FFE SAK N++V + F  +   I  ++++S
Sbjct:   22 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDS 190          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB3B_MESAU (Ras-related protein Rab-3B OS=Mesocricetus auratus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.251e-40
Identity = 81/170 (47.65%), Postives = 113/170 (66.47%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAES 705
            + KLL+IG+S VGK+  L R                  K++T+    KR+KLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   ILVGNK DM+E +R VPT KG+ LA++ G  FFE SAK N++V + F  +   I  ++++S
Sbjct:   22 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDS 190          
BLAST of CV885257 vs. ExPASy Swiss-Prot
Match: RAB3C_RAT (Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 8.164e-40
Identity = 82/170 (48.24%), Postives = 113/170 (66.47%), Query Frame = 1
Query:  196 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAES 705
            + KLL+IG+S VGK+  L R                  K++T+  + KRIKLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   IL GNK DM E +R V T +GQ L ++ G +FFETSAK N+NV++ F  +   I  +++ES
Sbjct:   30 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDM-EDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSES 198          
The following BLAST results are available for this feature:
BLAST of CV885257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB3A_HUMAN3.665e-4046.59Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3... [more]
RAB3A_BOVIN3.665e-4046.59Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A ... [more]
RAB35_RAT3.665e-4047.06Ras-related protein Rab-35 OS=Rattus norvegicus GN... [more]
RAB35_MOUSE3.665e-4047.06Ras-related protein Rab-35 OS=Mus musculus GN=Rab3... [more]
RAB35_HUMAN3.665e-4047.06Ras-related protein Rab-35 OS=Homo sapiens GN=RAB3... [more]
RAB3C_HUMAN4.786e-4048.24Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3... [more]
RAB3C_BOVIN4.786e-4048.24Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C ... [more]
RAB3B_MOUSE6.251e-4047.65Ras-related protein Rab-3B OS=Mus musculus GN=Rab3... [more]
RAB3B_MESAU6.251e-4047.65Ras-related protein Rab-3B OS=Mesocricetus auratus... [more]
RAB3C_RAT8.164e-4048.24Ras-related protein Rab-3C OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013F02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885257 ID=CV885257; Name=CV885257; organism=Citrus sinensis; type=EST; length=792bp
GAGAGAGAGAGGAGAGACCAAGTCCCCCCCCCCCACGCACGCACGGACTC
TCTGTTCACAAGCAATCTCTCCCATGTTACCGGCGACTTGTTAAATCTTC
TCACCCTTACAGTTTCAGAAAGAGAGTAATTGATTTGTTGTGAGAGAGAA
GAGATGGCTGCACCACCAGCGAGGGCACGTGCTGATTATGATTACCTCAT
CAAGCTTCTTTTGATCGGTGACAGCGGTGTGGGGAAGAGTTGTTTGCTTC
TGCGATTTTCAGACGGTTCCTTCACAACCAGTTTTATTACTACTATTGGC
ATTGATTTTAAGATAAGAACCATCGAGCTTGATGGAAAACGGATTAAATT
GCAAATTTGGGATACAGCTGGTCAGGAACGGTTTCGAACCATCACAACAG
CTTACTACCGTGGAGCCATGGGGATTTTGCTGGTGTATGATGTTACTGAC
GAGTCATCTTTCAACAATATTAGGAACTGGATTCGCAACATTGAACAGCA
TGCTTCTGACAATGTCAACAAGATACTTGTTGGGAACAAGGCTGACATGG
ATGAGAGCAAAAGGGCTGTGCCTACTTCAAAGGGTCAAGCACTTGCTGAT
GAGTATGGTATCAAGTTCTTTGAAACTAGTGCAAAAACTAATTTGAATGT
GGAGGAGGTTTTCTTTTCAATTGCCAAGGATATCAAGCAAAGACTTGCAG
AATCAGATTCTAAATCTGAGCCTCAGACAATTAAAATTAACCAACCAGAT
ACCGGAGCAAGTGGCGCTCAAGCTGCCCAGAAGTCAGCTTGC
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