CV885249

Overview
NameCV885249
Unique NameCV885249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: MTDH_MEDSA (Probable mannitol dehydrogenase OS=Medicago sativa GN=CAD1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.104e-20
Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 3
Query:  594 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERY 830
            PGHEIVG+V +VG NV +F+VGD+VGVG  V SC+ C+ CN  LE +C + V+T+N+    GT T GGYS ++VVH+RY
Sbjct:   70 PGHEIVGVVTKVGINVKKFRVGDNVGVGVIVESCQTCENCNQDLEQYCPKPVFTYNS-PYKGTRTYGGYSDFVVVHQRY 147          
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: MTDH_MESCR (Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.360e-19
Identity = 47/105 (44.76%), Postives = 61/105 (58.10%), Query Frame = 3
Query:  537 GTCH---YYXXXXXXXXXXXXXPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 842
            G CH   +Y             PGHEIVG+V EVG+ V  FKVGD VGVG  V SCR C+ C + LE +C + + T+ +   DGT+T GGYS  +VV E +  +I
Sbjct:   49 GICHSDLHYIKNEWGNAVYPAIPGHEIVGVVTEVGNKVQNFKVGDKVGVGCMVGSCRSCESCENHLENYCPKMILTYGSTYYDGTLTYGGYSDIMVVEEHFAVRI 153          
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: CADH7_ORYSJ (Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa subsp. japonica GN=CAD7 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.776e-19
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 3
Query:  597 GHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARS-VYTFNAIDADGTITKGGYSSYIVVHERY 830
            GHEI G+V EVG NV+RFK GD VGVG  VN+C  C+ C DG E +C+   V+T+N++D DGT T GGYS  +VV +R+
Sbjct:   81 GHEITGVVTEVGKNVARFKAGDEVGVGCMVNTCGGCESCRDGCENYCSGGVVFTYNSVDRDGTRTYGGYSDAVVVSQRF 159          
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: CADH3_ARATH (Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis thaliana GN=CAD3 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.776e-19
Identity = 43/83 (51.81%), Postives = 57/83 (68.67%), Query Frame = 3
Query:  594 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 842
            PGHEIVGI  +VG NV++FK GD VGVG  + SC+ C+ CN  LE +C + V+T+N+  +DGT  +GGYS  IVV  R+   I
Sbjct:   64 PGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSI 146          
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: MTDH1_STYHU (Probable mannitol dehydrogenase 1 OS=Stylosanthes humilis GN=CAD1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19
Identity = 42/79 (53.16%), Postives = 59/79 (74.68%), Query Frame = 3
Query:  594 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERY 830
            PGHEI GIV +VG NV++FK GD VGVG  V+SC++C+ C   LE +C + V+T+N+    GT T+GGYS ++VVH+R+
Sbjct:   63 PGHEIAGIVTKVGSNVTKFKEGDRVGVGVIVDSCQECECCQQDLESYCPKPVFTYNS-PYKGTRTQGGYSDFVVVHQRF 140          
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: CADH9_ARATH (Probable cinnamyl alcohol dehydrogenase 9 OS=Arabidopsis thaliana GN=CAD9 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.349e-18
Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = 3
Query:  594 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERY 830
            PGHEIVGI  +VG NV++FK GD VGVG    SC+ C+ C+  LE +C +  +T+NAI +DGT   GGYS  IVV +R+
Sbjct:   70 PGHEIVGIATKVGKNVTKFKEGDRVGVGVISGSCQSCESCDQDLENYCPQMSFTYNAIGSDGTKNYGGYSENIVVDQRF 148          
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: CADH2_ARATH (Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis thaliana GN=CAD2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.349e-18
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 3
Query:  594 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARSVYTFNAIDADGTI-TKGGYSSYIVVHERYCYKI 842
            PGHEIVGI  +VG NV++FK GD VGVG  + SC+ C+ CN  LE +C + V+T+N+  +DGT   +GGYS  IVV  R+   I
Sbjct:   64 PGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTSRNQGGYSDVIVVDHRFVLSI 147          
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: MTDH_APIGR (Mannitol dehydrogenase OS=Apium graveolens GN=MTD PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.374e-18
Identity = 41/79 (51.90%), Postives = 53/79 (67.09%), Query Frame = 3
Query:  594 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERY 830
            PGHEIVG+V EVG  V + KVGD+VG+G  V SCR C+ C D  E HC  ++ T+ +I  DGT+T GGYS  +V  E +
Sbjct:   70 PGHEIVGVVTEVGSKVEKVKVGDNVGIGCLVGSCRSCESCCDNRESHCENTIDTYGSIYFDGTMTHGGYSDTMVADEHF 148          
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: CADH6_ORYSJ (Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CAD6 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.374e-18
Identity = 42/83 (50.60%), Postives = 55/83 (66.27%), Query Frame = 3
Query:  594 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 842
            PGHEI G+V +VG NV+ FKVGD VGVG    SC DC++C    E +C +   T+N I  DG+IT GGYS  +V H+R+  +I
Sbjct:   68 PGHEITGVVTKVGTNVAGFKVGDRVGVGCIAASCLDCEHCRRSEENYCDKVALTYNGIFWDGSITYGGYSGMLVAHKRFVVRI 150          
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: CAD8C_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8C OS=Oryza sativa subsp. japonica GN=CAD8C PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.374e-18
Identity = 44/86 (51.16%), Postives = 58/86 (67.44%), Query Frame = 3
Query:  594 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARSVYTFNAIDAD---GTITKGGYSSYIVVHERYCYKI 842
            PGHEIVG+V  VG  V++FK GD VGVG +V SCR C+ C +G E +CA+ V T N +D D   G  T+GG+S  IVV+E Y  ++
Sbjct:  140 PGHEIVGVVTGVGAGVTKFKAGDTVGVGYFVASCRGCECCGNGYENYCAKMVTTCNGVDHDHGGGAATQGGFSDAIVVNEHYVLRV 225          
The following BLAST results are available for this feature:
BLAST of CV885249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
MTDH_MEDSA6.104e-2055.70Probable mannitol dehydrogenase OS=Medicago sativa... [more]
MTDH_MESCR1.360e-1944.76Probable mannitol dehydrogenase OS=Mesembryanthemu... [more]
CADH7_ORYSJ1.776e-1955.70Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa s... [more]
CADH3_ARATH1.776e-1951.81Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis th... [more]
MTDH1_STYHU3.956e-1953.16Probable mannitol dehydrogenase 1 OS=Stylosanthes ... [more]
CADH9_ARATH3.349e-1853.16Probable cinnamyl alcohol dehydrogenase 9 OS=Arabi... [more]
CADH2_ARATH3.349e-1851.19Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis th... [more]
MTDH_APIGR4.374e-1851.90Mannitol dehydrogenase OS=Apium graveolens GN=MTD ... [more]
CADH6_ORYSJ4.374e-1850.60Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza... [more]
CAD8C_ORYSJ4.374e-1851.16Probable cinnamyl alcohol dehydrogenase 8C OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013E10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885249 ID=CV885249; Name=CV885249; organism=Citrus sinensis; type=EST; length=848bp
ATTTATAATTTAAAGAATTTCTAAAACGACTCTCTTGAGCTTTATTATTA
ATAAAGCCACTTATTTACAAAAGGATTAACATTGGAAGGAGCAAAAAAGT
ATACACTTTTCATCCGTTTCCATATGATAGAAACAAGAACAAGTAAAGGA
AAAATTATTAATTCAGCAAGGTAATATAGAGGAAATAAATTAAGATTATT
AGAGTTGATGGATATAAATAAATTAATTAAAAGAAACTGCTAGTTCTTGG
TGTTCATGCTTTTTGTAACTTGCTCAGCATTTTGTTTGACGGCTTCCTTA
GATTTATCAGCCTTTCCGAGCAAATTATCTTTGACAGTTTGAGCAGTGTC
TTTGGCCGAACCCCATGCATCTTGAACTGTTTGTTTTGCCTTATCACCAA
TGTCTTGTGCTGTTTCAGACACCTTTCCAGCCTTATCTTTTGTAATATGA
CTCATCTGAATGTATCTAGGTTTTGAGGCAAGAAATTGCTTAGAATTCCA
AATGCTTCTCCTAGCAATTGCAAGTTTTGAAAGAGTGGAACTTGCCATTA
TTATTTTTCTTTTGTTTTCTTTTTATTATCTTCTACTTTGGTGCCTGGAC
ATGAGATTGTTGGAATTGTGAAAGAGGTTGGTCACAATGTTAGCCGCTTC
AAAGTTGGTGACCATGTTGGCGTGGGAACTTATGTCAACTCATGCAGAGA
TTGTAAGTATTGTAATGATGGGCTAGAAGTTCATTGTGCTCGGTCAGTTT
ACACTTTTAATGCCATTGATGCGGATGGTACTATCACAAAAGGAGGGTAT
TCTAGTTACATTGTTGTCCATGAGAGATACTGTTATAAAATAGCCAAT
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