CV885249

Overview
NameCV885249
Unique NameCV885249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: MTDH_FRAAN (Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.461e-18
Identity = 43/83 (51.81%), Postives = 53/83 (63.86%), Query Frame = 3
Query:  594 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 842
            PGHEIVG V EVG  V +FKVGD VGVG  V SCR C+ C D LE +C + + T+ A   DG+ T GGYS  +V  E +  +I
Sbjct:   68 PGHEIVGEVTEVGSKVQKFKVGDRVGVGCIVGSCRSCENCTDHLENYCPKQILTYGAKYYDGSTTYGGYSDIMVADEHFIVRI 150          
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: MTDH3_STYHU (Probable mannitol dehydrogenase 3 OS=Stylosanthes humilis GN=CAD3 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.744e-18
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 3
Query:  594 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 842
            PGHE++GIV EVG  V ++KVGD VGVG +V SCR C+ C D LE +C + + T      DGT T GGYS  +VV E +  +I
Sbjct:   71 PGHEVIGIVAEVGSKVEKYKVGDKVGVGYFVESCRSCQNCIDNLENYCPKHILTQGDKHIDGTTTYGGYSDSMVVDEHFVTRI 153          
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: GEDH1_OCIBA (Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.744e-18
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 3
Query:  594 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERY 830
            PGHEIVGIV EVG  V + K+GD VGVG  V SCR C  C++ LE +C + + T+ A   DGTI +GGYS  +V  E +
Sbjct:   70 PGHEIVGIVTEVGSKVEKVKIGDKVGVGVLVGSCRQCDQCSNDLENYCYKQILTYGAPYLDGTIARGGYSDIMVADEHF 148          
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: CADH_POPDE (Probable cinnamyl alcohol dehydrogenase OS=Populus deltoides PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.273e-17
Identity = 38/83 (45.78%), Postives = 59/83 (71.08%), Query Frame = 3
Query:  594 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 842
            PGHE+VG V EVG +V+RFKVGD VGVG  V SC++C  C   +E +C + ++++N +  DG  T+GG++  +VVH+++  +I
Sbjct:   67 PGHEVVGEVVEVGSDVTRFKVGDVVGVGVIVGSCKNCHPCKSEIEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVHQKFVVRI 149          
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: CADH9_ORYSJ (Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza sativa subsp. japonica GN=CAD9 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.273e-17
Identity = 43/83 (51.81%), Postives = 54/83 (65.06%), Query Frame = 3
Query:  594 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 842
            PGHEIVG+V EVG +V+RF  GD VGVG   ++CR C  C DG E +CA  V +FNA   DG    GG+S   VV++RY  +I
Sbjct:   65 PGHEIVGVVAEVGSSVARFAAGDTVGVGYIASTCRACANCRDGFENYCAGLVPSFNAALPDGATVHGGFSELAVVNQRYVVRI 147          
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: CADH_MEDSA (Probable cinnamyl alcohol dehydrogenase OS=Medicago sativa GN=CAD2 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.662e-17
Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = 3
Query:  594 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 842
            PGHE+VG V EVG NV+RFKVG+ VGVG  V  C+ C+ C+  +E +C + ++++N +  DG IT+GG++   VV +++  KI
Sbjct:   68 PGHEVVGEVLEVGSNVTRFKVGEIVGVGLLVGCCKSCRACDSEIEQYCNKKIWSYNDVYTDGKITQGGFAESTVVEQKFVVKI 150          
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: ADHC_MYCTU (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium tuberculosis GN=adhC PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.662e-17
Identity = 41/84 (48.81%), Postives = 56/84 (66.67%), Query Frame = 3
Query:  594 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARSV-YTFNAIDADGTITKGGYSSYIVVHERYCYKI 842
            PGHEI G+V  VG  V++++ GD VGVG +V+SCR+C  C  G+E +C     +T+N+I  DG  T+GGYS  IVV E Y  +I
Sbjct:   61 PGHEIAGVVTAVGSEVTKYRQGDRVGVGCFVDSCRECNSCTRGIEQYCKPGANFTYNSIGKDGQPTQGGYSEAIVVDENYVLRI 144          
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: ADHC_MYCBO (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium bovis GN=adhC PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.662e-17
Identity = 41/84 (48.81%), Postives = 56/84 (66.67%), Query Frame = 3
Query:  594 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARSV-YTFNAIDADGTITKGGYSSYIVVHERYCYKI 842
            PGHEI G+V  VG  V++++ GD VGVG +V+SCR+C  C  G+E +C     +T+N+I  DG  T+GGYS  IVV E Y  +I
Sbjct:   61 PGHEIAGVVTAVGSEVTKYRQGDRVGVGCFVDSCRECNSCTRGIEQYCKPGANFTYNSIGKDGQPTQGGYSEAIVVDENYVLRI 144          
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: CAD8B_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8B OS=Oryza sativa subsp. japonica GN=CAD8B PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.703e-17
Identity = 42/83 (50.60%), Postives = 52/83 (62.65%), Query Frame = 3
Query:  594 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 842
            PGHEIVG+V  VG  V++FK GD VGVG +V SCR C  C  G E +C   V T N  D  G  T+GG+S  IVV+E Y  ++
Sbjct:  140 PGHEIVGVVTGVGAGVTKFKAGDTVGVGFFVGSCRTCDSCGKGYENYCPTMVITSNGKDYGGAATQGGFSDAIVVNEHYVLRV 222          
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: CADH8_ARATH (Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis thaliana GN=CAD8 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.836e-17
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 3
Query:  594 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 842
            PGHEIVG+V EVG  V++FK G+ VGVG  V+SC  C  C +G+E +C +S+ T+     D TIT GGYS ++V  E +  +I
Sbjct:   66 PGHEIVGVVTEVGAKVTKFKTGEKVGVGCLVSSCGSCDSCTEGMENYCPKSIQTYGFPYYDNTITYGGYSDHMVCEEGFVIRI 148          
The following BLAST results are available for this feature:
BLAST of CV885249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
MTDH_FRAAN7.461e-1851.81Probable mannitol dehydrogenase OS=Fragaria ananas... [more]
MTDH3_STYHU9.744e-1850.60Probable mannitol dehydrogenase 3 OS=Stylosanthes ... [more]
GEDH1_OCIBA9.744e-1851.90Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GE... [more]
CADH_POPDE1.273e-1745.78Probable cinnamyl alcohol dehydrogenase OS=Populus... [more]
CADH9_ORYSJ1.273e-1751.81Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza... [more]
CADH_MEDSA1.662e-1745.78Probable cinnamyl alcohol dehydrogenase OS=Medicag... [more]
ADHC_MYCTU1.662e-1748.81NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
ADHC_MYCBO1.662e-1748.81NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
CAD8B_ORYSJ3.703e-1750.60Probable cinnamyl alcohol dehydrogenase 8B OS=Oryz... [more]
CADH8_ARATH4.836e-1748.19Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis th... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_013E10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885249 ID=CV885249; Name=CV885249; organism=Citrus sinensis; type=EST; length=848bp
ATTTATAATTTAAAGAATTTCTAAAACGACTCTCTTGAGCTTTATTATTA
ATAAAGCCACTTATTTACAAAAGGATTAACATTGGAAGGAGCAAAAAAGT
ATACACTTTTCATCCGTTTCCATATGATAGAAACAAGAACAAGTAAAGGA
AAAATTATTAATTCAGCAAGGTAATATAGAGGAAATAAATTAAGATTATT
AGAGTTGATGGATATAAATAAATTAATTAAAAGAAACTGCTAGTTCTTGG
TGTTCATGCTTTTTGTAACTTGCTCAGCATTTTGTTTGACGGCTTCCTTA
GATTTATCAGCCTTTCCGAGCAAATTATCTTTGACAGTTTGAGCAGTGTC
TTTGGCCGAACCCCATGCATCTTGAACTGTTTGTTTTGCCTTATCACCAA
TGTCTTGTGCTGTTTCAGACACCTTTCCAGCCTTATCTTTTGTAATATGA
CTCATCTGAATGTATCTAGGTTTTGAGGCAAGAAATTGCTTAGAATTCCA
AATGCTTCTCCTAGCAATTGCAAGTTTTGAAAGAGTGGAACTTGCCATTA
TTATTTTTCTTTTGTTTTCTTTTTATTATCTTCTACTTTGGTGCCTGGAC
ATGAGATTGTTGGAATTGTGAAAGAGGTTGGTCACAATGTTAGCCGCTTC
AAAGTTGGTGACCATGTTGGCGTGGGAACTTATGTCAACTCATGCAGAGA
TTGTAAGTATTGTAATGATGGGCTAGAAGTTCATTGTGCTCGGTCAGTTT
ACACTTTTAATGCCATTGATGCGGATGGTACTATCACAAAAGGAGGGTAT
TCTAGTTACATTGTTGTCCATGAGAGATACTGTTATAAAATAGCCAAT
back to top