CV885204

Overview
NameCV885204
Unique NameCV885204
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12816 contig Csv1_Contig12816:351..1171. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885204 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.531e-25
Identity = 57/161 (35.40%), Postives = 90/161 (55.90%), Query Frame = -3
Query:  319 VLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKI 801
            +LG  T +W LF+   Y     V +  ++++ +LFLW+ ++   N+  P++P + I EE V  +A A+R  IN    + REI  GR+ K+   V   LW VS VG++ NFLT+ Y+  VL   +P +YE+Y+D +D         I+ QY   D ++L KI
Sbjct:   29 LLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKIDERLLQKI 189          
BLAST of CV885204 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.277e-21
Identity = 58/170 (34.12%), Postives = 93/170 (54.71%), Query Frame = -3
Query:  292 VLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRSLKDKKK 801
            +L  +T  W LF+   Y+LL+ V + L++ +A+ FLW+ ++T +N+  P +P + IPEE   + A  LR  IN   ++  +I   R+  + L V   LW +S VG+  N LTL YI  +L  + P++YEKY+D +D   EK  +  K     F   +  K P  +  +KK
Sbjct:   37 LLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHID---EKVNSTSK-----FVRNISRKFPLPINKEKK 198          
BLAST of CV885204 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.891e-21
Identity = 50/175 (28.57%), Postives = 93/175 (53.14%), Query Frame = -3
Query:  298 KKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRSL-KDK 819
            + +S GV+  +T  W++F+      L++    L++ + + F+ +  S F N+    +PE+ + EE V   A++ R ++N    +  ++  G D + F  V+  LW++S +GS+ +  TL YI  +L  T+P +Y KY+ +VD         +   Y + D  V+S++  SL KDK
Sbjct:   50 RHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSLSKDK 224          
BLAST of CV885204 vs. ExPASy Swiss-Prot
Match: RTNLO_ARATH (Reticulon-like protein B15 OS=Arabidopsis thaliana GN=RTNLB15 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.176e-20
Identity = 60/173 (34.68%), Postives = 97/173 (56.07%), Query Frame = -3
Query:  304 KISAGV-LGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSN-ASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRSLK 816
            KI++G+ L  AT  W L + +E  L+ L+C  L++ + +LFLW+     F  + PP   E+  P+ P+  L S +   +     +L EIA G+D K FL  I  + ++  +GS+ + LT+ YI  V   T+PV+Y ++++ +DSF  K   E      VF  +V+SKIPR+ K
Sbjct:   22 KINSGITLVMATLFWFLLEFMEARLVPLLCSILLLLMLILFLWAKFGEVFFTRRPPTPEELNQPDSPLKALFSMMEGHL----LMLYEIAYGKDNKTFLKTILYVAIIYNIGSYISLLTILYICLVCSMTIPVVYMQFQELIDSFMGKVSEEKNNLLEVF-KQVVSKIPRAPK 189          
BLAST of CV885204 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.420e-20
Identity = 45/141 (31.91%), Postives = 83/141 (58.87%), Query Frame = -3
Query:  397 KKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRV 819
            K +S G++    A W++F+   Y + TL+   L++ L++LFLWS +++ +N+  P +PE  I E    + +  LR  +N+   +  +IA  RD + +  V   L+++S++GS  +F TL +   +++ TVP  YE+YED +
Sbjct:   33 KNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYI 173          
BLAST of CV885204 vs. ExPASy Swiss-Prot
Match: RTNLM_ARATH (Reticulon-like protein B13 OS=Arabidopsis thaliana GN=RTNLB13 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.790e-11
Identity = 40/179 (22.35%), Postives = 85/179 (47.49%), Query Frame = -3
Query:  292 KKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVL---SKIPRSLKDKKK 819
            KK++   L  +T+ W+L     +  +T+V    I  ++++FLW +    ++K  P +  + + EE V++   + R  +      +  + +  +   F   + G W++S +G+  +F T  +I  V+  TVP ++E+Y D++         + K  Y     K+L   +K+    ++K K
Sbjct:   25 KKLAFSTLLVSTSTWILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLLSKVEPELSGLEVSEEFVVETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRIGNLLDFHTCLFIGLVMGLTVPKLWEEYGDQIQKHLGSLKDKSKGAYNTTHEKILEMKNKLHHGTEEKVK 203          
The following BLAST results are available for this feature:
BLAST of CV885204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RTNLJ_ARATH3.531e-2535.40Reticulon-like protein B10 OS=Arabidopsis thaliana... [more]
RTNLK_ARATH5.277e-2134.12Reticulon-like protein B11 OS=Arabidopsis thaliana... [more]
RTNLP_ARATH6.891e-2128.57Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]
RTNLO_ARATH1.176e-2034.68Reticulon-like protein B15 OS=Arabidopsis thaliana... [more]
RTNLL_ARATH3.420e-2031.91Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]
RTNLM_ARATH3.790e-1122.35Reticulon-like protein B13 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013C06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885204 ID=CV885204; Name=CV885204; organism=Citrus sinensis; type=EST; length=821bp
TTTTTTTTTTTTTTTTTGGAACAAATGTACAAACACACTAATTGATAAAA
AACATAATAACACATCAGCATAATACTCACACATATCCATGCAAATAGCT
ACGACATATGTAGCATAAACAAGTACAAAATATCCATATTGTGAACCCAA
CCACCTCTAGAACAACAAAGGAATAAAACAGGGTTCAAGCCAACACTGGA
TAACAGTTTCATAACACCTAGATAAAATACTTTCTACCAAATGTGTGTCA
GAACCTAGCAAAGACCACAAATTTATACCACCATTCTAAGCCTTCTTCTT
GTCCTTCAATGACCTCGGTATCTTACTTAAGACCTTGGCATCAAAGACTG
CATACTGCTTCTTGATCTCAGCCCATGCCTTCTCAGAAAATGAATCCACC
CGATCCTCATACTTCTCATATATCACAGGCACAGTGTGAAGCAGTACAAA
AACTATGTAGAACAAGGTCAAGAAATTGCACCAGCTCCCCACAATCGACA
CAACCCACAAGCCAGCAATCACCGAGAGAAACTTCTTCAGATCTCTTCCA
GATGCTATTTCCCTCAGAAGAGTGAAGGCCCTATTGATCTCAAACCTAAG
TGCAGAGGCCAACTGTAAAACTGGTTCCTCAGGGATATATACTTCCGGAA
TGCGTGGTGGAGACTTGTTAATGAAGGTGGAAGCATTAGACCACAAGAAA
AGCACCGCAAGTGCAACAATCAGGCAGTGACAGACAAGAGTTAGAAGGTG
GTACTCAAGCAATTGAAACAGAACCCATATTGCAGTAGCCCCACCAAGTA
CTCCTGCTGAAATCTTCTTGT
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