CV885203

Overview
NameCV885203
Unique NameCV885203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885203 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.099e-30
Identity = 62/198 (31.31%), Postives = 110/198 (55.56%), Query Frame = 2
Query:  161 FRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRSL 754
            +RL GR+  VH+ +GGGK AD+ LWR + +S GV+  +T  W++F+      L++    L++ + + F+ +  S F N+    +PE+ + EE V   A++ R ++N    +  ++  G D + F  V+  LW++S +GS+ +  TL YI  +L  T+P +Y KY+ +VD         +   Y + D  V+S++  SL
Sbjct:   23 YRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSL 220          
BLAST of CV885203 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.198e-30
Identity = 59/167 (35.33%), Postives = 103/167 (61.68%), Query Frame = 2
Query:  164 RLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRV 664
            +LF R++ +H++LGGG  ADV LWR K +S G++    A W++F+   Y + TL+   L++ L++LFLWS +++ +N+  P +PE  I E    + +  LR  +N+   +  +IA  RD + +  V   L+++S++GS  +F TL +   +++ TVP  YE+YED +
Sbjct:    7 KLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYI 173          
BLAST of CV885203 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.198e-30
Identity = 65/188 (34.57%), Postives = 106/188 (56.38%), Query Frame = 2
Query:  179 EKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKI 742
            E+ VH+ +  G  AD+ +W+N++    +LG  T +W LF+   Y     V +  ++++ +LFLW+ ++   N+  P++P + I EE V  +A A+R  IN    + REI  GR+ K+   V   LW VS VG++ NFLT+ Y+  VL   +P +YE+Y+D +D         I+ QY   D ++L KI
Sbjct:    2 EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKIDERLLQKI 189          
BLAST of CV885203 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.534e-27
Identity = 61/160 (38.12%), Postives = 96/160 (60.00%), Query Frame = 2
Query:  188 VHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVD 667
            VH+ LG G  AD+ LWRN+  +  +L  +T  W LF+   Y+LL+ V + L++ +A+ FLW+ ++T +N+  P +P + IPEE   + A  LR  IN   ++  +I   R+  + L V   LW +S VG+  N LTL YI  +L  + P++YEKY+D +D
Sbjct:   13 VHQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHID 172          
BLAST of CV885203 vs. ExPASy Swiss-Prot
Match: RTNLO_ARATH (Reticulon-like protein B15 OS=Arabidopsis thaliana GN=RTNLB15 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 5.283e-25
Identity = 67/191 (35.08%), Postives = 106/191 (55.50%), Query Frame = 2
Query:  188 VHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSN-ASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRSLK 757
            V ++LG G  AD+ LW++K  S   L  AT  W L + +E  L+ L+C  L++ + +LFLW+     F  + PP   E+  P+ P+  L S +   +     +L EIA G+D K FL  I  + ++  +GS+ + LT+ YI  V   T+PV+Y ++++ +DSF  K   E      VF  +V+SKIPR+ K
Sbjct:    4 VDQILGDGAVADLCLWKDKINSGITLVMATLFWFLLEFMEARLVPLLCSILLLLMLILFLWAKFGEVFFTRRPPTPEELNQPDSPLKALFSMMEGHL----LMLYEIAYGKDNKTFLKTILYVAIIYNIGSYISLLTILYICLVCSMTIPVVYMQFQELIDSFMGKVSEEKNNLLEVF-KQVVSKIPRAPK 189          
BLAST of CV885203 vs. ExPASy Swiss-Prot
Match: RTNLM_ARATH (Reticulon-like protein B13 OS=Arabidopsis thaliana GN=RTNLB13 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.104e-14
Identity = 41/171 (23.98%), Postives = 84/171 (49.12%), Query Frame = 2
Query:  221 DVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVL 733
            D++LWR KK++   L  +T+ W+L     +  +T+V    I  ++++FLW +    ++K  P +  + + EE V++   + R  +      +  + +  +   F   + G W++S +G+  +F T  +I  V+  TVP ++E+Y D++         + K  Y     K+L
Sbjct:   18 DIYLWRRKKLAFSTLLVSTSTWILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLLSKVEPELSGLEVSEEFVVETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRIGNLLDFHTCLFIGLVMGLTVPKLWEEYGDQIQKHLGSLKDKSKGAYNTTHEKIL 188          
The following BLAST results are available for this feature:
BLAST of CV885203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RTNLP_ARATH1.099e-3031.31Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]
RTNLL_ARATH3.198e-3035.33Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]
RTNLJ_ARATH3.198e-3034.57Reticulon-like protein B10 OS=Arabidopsis thaliana... [more]
RTNLK_ARATH2.534e-2738.13Reticulon-like protein B11 OS=Arabidopsis thaliana... [more]
RTNLO_ARATH5.283e-2535.08Reticulon-like protein B15 OS=Arabidopsis thaliana... [more]
RTNLM_ARATH1.104e-1423.98Reticulon-like protein B13 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013C06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885203 ID=CV885203; Name=CV885203; organism=Citrus sinensis; type=EST; length=758bp
CGAGATGGCTGACGAGCATAAACACGAGGAACCAGCCGGTGAATCGGTGA
TGGAGAAGATAACGGAGAAGATCCACGGCCACGATTCGTCGTCGTCGTCA
TCGTCATCTGACACCGATGATGATAAGAAGTCATCTACATCCTCCCTCAA
GACCAAAGTATTTCGTCTCTTCGGAAGAGAAAAGCCTGTTCACAAGGTTC
TTGGTGGCGGAAAACCTGCGGATGTTTTCTTATGGAGGAACAAGAAGATT
TCAGCAGGAGTACTTGGTGGGGCTACTGCAATATGGGTTCTGTTTCAATT
GCTTGAGTACCACCTTCTAACTCTTGTCTGTCACTGCCTGATTGTTGCAC
TTGCGGTGCTTTTCTTGTGGTCTAATGCTTCCACCTTCATTAACAAGTCT
CCACCACGCATTCCGGAAGTATATATCCCTGAGGAACCAGTTTTACAGTT
GGCCTCTGCACTTAGGTTTGAGATCAATAGGGCCTTCACTCTTCTGAGGG
AAATAGCATCTGGAAGAGATCTGAAGAAGTTTCTCTCGGTGATTGCTGGC
TTGTGGGTTGTGTCGATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTT
CTACATAGTTTTTGTACTGCTTCACACTGTGCCTGTGATATATGAGAAGT
ATGAGGATCGGGTGGATTCATTTTCTGAGAAGGCATGGGCTGAGATCAAG
AAGCAGTATGCAGTCTTTGATGCCAAGGTCTTAAGTAAGATACCGAGGTC
ATTGAAGG
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