CV885203
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV885203 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 1.099e-30 Identity = 62/198 (31.31%), Postives = 110/198 (55.56%), Query Frame = 2 Query: 161 FRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRSL 754 +RL GR+ VH+ +GGGK AD+ LWR + +S GV+ +T W++F+ L++ L++ + + F+ + S F N+ +PE+ + EE V A++ R ++N + ++ G D + F V+ LW++S +GS+ + TL YI +L T+P +Y KY+ +VD + Y + D V+S++ SL Sbjct: 23 YRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSL 220
BLAST of CV885203 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 3.198e-30 Identity = 59/167 (35.33%), Postives = 103/167 (61.68%), Query Frame = 2 Query: 164 RLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRV 664 +LF R++ +H++LGGG ADV LWR K +S G++ A W++F+ Y + TL+ L++ L++LFLWS +++ +N+ P +PE I E + + LR +N+ + +IA RD + + V L+++S++GS +F TL + +++ TVP YE+YED + Sbjct: 7 KLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYI 173
BLAST of CV885203 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 3.198e-30 Identity = 65/188 (34.57%), Postives = 106/188 (56.38%), Query Frame = 2 Query: 179 EKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKI 742 E+ VH+ + G AD+ +W+N++ +LG T +W LF+ Y V + ++++ +LFLW+ ++ N+ P++P + I EE V +A A+R IN + REI GR+ K+ V LW VS VG++ NFLT+ Y+ VL +P +YE+Y+D +D I+ QY D ++L KI Sbjct: 2 EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKIDERLLQKI 189
BLAST of CV885203 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.534e-27 Identity = 61/160 (38.12%), Postives = 96/160 (60.00%), Query Frame = 2 Query: 188 VHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVD 667 VH+ LG G AD+ LWRN+ + +L +T W LF+ Y+LL+ V + L++ +A+ FLW+ ++T +N+ P +P + IPEE + A LR IN ++ +I R+ + L V LW +S VG+ N LTL YI +L + P++YEKY+D +D Sbjct: 13 VHQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHID 172
BLAST of CV885203 vs. ExPASy Swiss-Prot
Match: RTNLO_ARATH (Reticulon-like protein B15 OS=Arabidopsis thaliana GN=RTNLB15 PE=2 SV=2) HSP 1 Score: 114.775 bits (286), Expect = 5.283e-25 Identity = 67/191 (35.08%), Postives = 106/191 (55.50%), Query Frame = 2 Query: 188 VHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSN-ASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRSLK 757 V ++LG G AD+ LW++K S L AT W L + +E L+ L+C L++ + +LFLW+ F + PP E+ P+ P+ L S + + +L EIA G+D K FL I + ++ +GS+ + LT+ YI V T+PV+Y ++++ +DSF K E VF +V+SKIPR+ K Sbjct: 4 VDQILGDGAVADLCLWKDKINSGITLVMATLFWFLLEFMEARLVPLLCSILLLLMLILFLWAKFGEVFFTRRPPTPEELNQPDSPLKALFSMMEGHL----LMLYEIAYGKDNKTFLKTILYVAIIYNIGSYISLLTILYICLVCSMTIPVVYMQFQELIDSFMGKVSEEKNNLLEVF-KQVVSKIPRAPK 189
BLAST of CV885203 vs. ExPASy Swiss-Prot
Match: RTNLM_ARATH (Reticulon-like protein B13 OS=Arabidopsis thaliana GN=RTNLB13 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.104e-14 Identity = 41/171 (23.98%), Postives = 84/171 (49.12%), Query Frame = 2 Query: 221 DVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVL 733 D++LWR KK++ L +T+ W+L + +T+V I ++++FLW + ++K P + + + EE V++ + R + + + + + F + G W++S +G+ +F T +I V+ TVP ++E+Y D++ + K Y K+L Sbjct: 18 DIYLWRRKKLAFSTLLVSTSTWILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLLSKVEPELSGLEVSEEFVVETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRIGNLLDFHTCLFIGLVMGLTVPKLWEEYGDQIQKHLGSLKDKSKGAYNTTHEKIL 188 The following BLAST results are available for this feature:
BLAST of CV885203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >CV885203 ID=CV885203; Name=CV885203; organism=Citrus sinensis; type=EST; length=758bpback to top |