CV885196

Overview
NameCV885196
Unique NameCV885196
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885196 vs. ExPASy Swiss-Prot
Match: TBG_EUPAE (Tubulin gamma chain OS=Euplotes aediculatus PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.492e-16
Identity = 49/199 (24.62%), Postives = 104/199 (52.26%), Query Frame = -3
Query:  305 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY---RALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---KGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDE---MEFTEAESNMNDLVAEY 874
            M+  T  LR+PG +N+D+  L  +L+P PR HF M G+ PL+    Q+Y   R  T  ++ +++   KN+M     + G Y++   + +G +   +V + +  ++ +  + F+ W P +++ ++    P    G K++   + N T I+ +F+ + +Q+    +R A+++ +    + E    EF  ++  + +L+ EY
Sbjct:  233 MAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFLMTGYTPLSL--DQKYTSVRKTTFLDVMRRLLQTKNIMVTGAVKKGAYMSILNVIQGDVDPTQVHKSLQRIKERKLANFIPWGPASIQVALAKKSPYIDSGHKVSGLMLANHTGIRSIFKVLYDQYRTFRKRDAYMNIFKQTKIFEDNLDEFDSSDEVVKNLIDEY 429          
BLAST of CV885196 vs. ExPASy Swiss-Prot
Match: TBG1_EUPCR (Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.492e-16
Identity = 46/187 (24.60%), Postives = 97/187 (51.87%), Query Frame = -3
Query:  329 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT--SRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---KGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 874
            M+  T  LR+PG +N+DL  L  +L+P PR HF M G+ PL+   +     R  TV ++ +++   KN+M     + G Y++   + +G +   +V + +  ++ +  + F+ W P +++ ++    P    G K++   + N T I+ +F+ + +Q+    +R A+++ +    + E    E +S+
Sbjct:  233 MAASTTTLRYPGYMNNDLVGLIASLVPTPRCHFLMTGYTPLSLIDQKVTSVRKTTVLDVMRRLLQTKNIMATGAIKKGAYMSILNIIQGDVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSKKSPYMESGHKVSGLMLANHTGIRSIFKVIYDQYRTFRKRDAYMNIFKQTKIFEDNLDEFDSS 419          
BLAST of CV885196 vs. ExPASy Swiss-Prot
Match: TBG_ENTHI (Tubulin gamma chain OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14
Identity = 48/194 (24.74%), Postives = 94/194 (48.45%), Query Frame = -3
Query:  305 TMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVK---SSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEY 877
            +MS  T  LRFP  L + L  L ++L P    HF M  + PL        R   + ++ +++   +N+M     + G+Y++    F+G +S  E++E +    ++  + FV W    +K   + V  +  +G +M+   + N+TSI+  F+ + + F  MF+++ +L           EF E++  +  ++ EY
Sbjct:  230 SMSAFTANLRFPSTLYNSLNSLMIHLCPSRFSHFLMTSYTPLRQVNQISSRTSAI-DVMKRLIQPQNIMARTRLKEGKYISMCDFFQGDVSYDEINEALQRFTDRRLAEFVPWNKEAIKVVHTRVSPLVKRGNRMSGMLLANNTSIRYYFQDILKAFDQMFKKRVYLQTDRDNLRKFPEFEESKEIVKCVIEEY 422          
BLAST of CV885196 vs. ExPASy Swiss-Prot
Match: TBG_ASHGO (Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.544e-13
Identity = 52/201 (25.87%), Postives = 90/201 (44.78%), Query Frame = -3
Query:  305 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS---RGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFI-----GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEM---EFTEAESNMNDLVAEY 874
            MS VT  LRFP  + + L  +   L+P P LHF    F P TS    G++ ++ L+  ++   ++D  N M   D     YL      +G +   +V   ++  Q +    F  W P ++  ++    P      S ++      N++SI  +F++    F  +F+R AFLH +    M +    EF E+   +  ++ EY
Sbjct:  236 MSSVTNSLRFPSYMYNSLPSIFSTLVPTPELHFLAPSFTPFTSDFVPGAKDFKRLSAYDVILDLFDKNNSMVTRDTDTPVYLAIYDALQGAVEQSDVTRAILKTQQRIK--FAPWSPTSLHVNLGRKSPYNSSANSDYVSGMMLANTSSIVSVFQKTVSSFDVIFKRGAFLHKFQNGKMFQHGWDEFLESREVIQGVIDEY 434          
The following BLAST results are available for this feature:
BLAST of CV885196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 414
Match NameE-valueIdentityDescription
TBG_EUPAE1.492e-1624.62Tubulin gamma chain OS=Euplotes aediculatus PE=2 S... [more]
TBG1_EUPCR1.492e-1624.60Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=... [more]
TBG_ENTHI1.069e-1424.74Tubulin gamma chain OS=Entamoeba histolytica PE=2 ... [more]
TBG_ASHGO1.544e-1325.87Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013C02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885196 ID=CV885196; Name=CV885196; organism=Citrus sinensis; type=EST; length=879bp
TTTTTTTTTTTTTTTTTAGCTTCAGTGATATCTTTTAACTACTTAATACA
AACATACATCATTTATATTGAAACACATCATACCCATCCCCCAATACAAC
GAGACAAGTTACATACCAATAAACATCACATTCTAATGATCCCTCAACAA
CAGAAACAATAATCACAAACTGAAAGAGCGCCGACAAGAAATAAATTTCA
GACAAACTGGCCCTGGAACATTAGAAAAAGACACCTCATGCTGCAACTTC
CTCTTCTTCTTCCTCGTACTCCTCGTCGTCAGCAGTTGCATCCTGATACT
GCTGGTACTCTGCCACCAAGTCATTCATGTTACTCTCAGCCTCGGTGAAC
TCCATCTCGTCCATTCCCTCACCGGTGTACCAGTGCAAGAAAGCTTTCCT
CCGAAACATAGCCGTAAATTGCTCACTGACTCGCCTAAACATCTCCTGAA
TTGACGTTGAATTTCCAATGAAAGTGGATGCCATTTTCAGACCCTTAGGC
GGGATGTCACACACGCTCGACTTGACATTATTTGGTATCCACTCGACAAA
GTACGAAGAGTTCTTGTTTTGGACATTGATCATTTGTTCATCAACCTCTT
TAGTACTCATCTTACCACGGAACATGGCCGAAGCAGTTAGGTAACGACCG
TGGCGTGGGTCAGCAGCACACATCATGTTCTTAGCATCCCACATCTGCTG
GGTTAGTTCCGGCACAGTAAGGGCACGATACTGCTGTGATCCTCGTGATG
TCAAGGGTGCAAACCCAACCATGAAGAAATGGAGACGCGGGAAAGGGATA
AGGTTAACAGCAAGCTTCCTGAGGTCAGAGTTCAGCTGTCCGGGGAATCG
AAGACAGCATGTGACGCCACTCATGGTAG
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