CV885196
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV885196 vs. ExPASy Swiss-Prot
Match: TBG_EUPAE (Tubulin gamma chain OS=Euplotes aediculatus PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.492e-16 Identity = 49/199 (24.62%), Postives = 104/199 (52.26%), Query Frame = -3 Query: 305 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY---RALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---KGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDE---MEFTEAESNMNDLVAEY 874 M+ T LR+PG +N+D+ L +L+P PR HF M G+ PL+ Q+Y R T ++ +++ KN+M + G Y++ + +G + +V + + ++ + + F+ W P +++ ++ P G K++ + N T I+ +F+ + +Q+ +R A+++ + + E EF ++ + +L+ EY Sbjct: 233 MAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFLMTGYTPLSL--DQKYTSVRKTTFLDVMRRLLQTKNIMVTGAVKKGAYMSILNVIQGDVDPTQVHKSLQRIKERKLANFIPWGPASIQVALAKKSPYIDSGHKVSGLMLANHTGIRSIFKVLYDQYRTFRKRDAYMNIFKQTKIFEDNLDEFDSSDEVVKNLIDEY 429
BLAST of CV885196 vs. ExPASy Swiss-Prot
Match: TBG1_EUPCR (Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.492e-16 Identity = 46/187 (24.60%), Postives = 97/187 (51.87%), Query Frame = -3 Query: 329 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT--SRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---KGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 874 M+ T LR+PG +N+DL L +L+P PR HF M G+ PL+ + R TV ++ +++ KN+M + G Y++ + +G + +V + + ++ + + F+ W P +++ ++ P G K++ + N T I+ +F+ + +Q+ +R A+++ + + E E +S+ Sbjct: 233 MAASTTTLRYPGYMNNDLVGLIASLVPTPRCHFLMTGYTPLSLIDQKVTSVRKTTVLDVMRRLLQTKNIMATGAIKKGAYMSILNIIQGDVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSKKSPYMESGHKVSGLMLANHTGIRSIFKVIYDQYRTFRKRDAYMNIFKQTKIFEDNLDEFDSS 419
BLAST of CV885196 vs. ExPASy Swiss-Prot
Match: TBG_ENTHI (Tubulin gamma chain OS=Entamoeba histolytica PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14 Identity = 48/194 (24.74%), Postives = 94/194 (48.45%), Query Frame = -3 Query: 305 TMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVK---SSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEY 877 +MS T LRFP L + L L ++L P HF M + PL R + ++ +++ +N+M + G+Y++ F+G +S E++E + ++ + FV W +K + V + +G +M+ + N+TSI+ F+ + + F MF+++ +L EF E++ + ++ EY Sbjct: 230 SMSAFTANLRFPSTLYNSLNSLMIHLCPSRFSHFLMTSYTPLRQVNQISSRTSAI-DVMKRLIQPQNIMARTRLKEGKYISMCDFFQGDVSYDEINEALQRFTDRRLAEFVPWNKEAIKVVHTRVSPLVKRGNRMSGMLLANNTSIRYYFQDILKAFDQMFKKRVYLQTDRDNLRKFPEFEESKEIVKCVIEEY 422
BLAST of CV885196 vs. ExPASy Swiss-Prot
Match: TBG_ASHGO (Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.544e-13 Identity = 52/201 (25.87%), Postives = 90/201 (44.78%), Query Frame = -3 Query: 305 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS---RGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFI-----GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEM---EFTEAESNMNDLVAEY 874 MS VT LRFP + + L + L+P P LHF F P TS G++ ++ L+ ++ ++D N M D YL +G + +V ++ Q + F W P ++ ++ P S ++ N++SI +F++ F +F+R AFLH + M + EF E+ + ++ EY Sbjct: 236 MSSVTNSLRFPSYMYNSLPSIFSTLVPTPELHFLAPSFTPFTSDFVPGAKDFKRLSAYDVILDLFDKNNSMVTRDTDTPVYLAIYDALQGAVEQSDVTRAILKTQQRIK--FAPWSPTSLHVNLGRKSPYNSSANSDYVSGMMLANTSSIVSVFQKTVSSFDVIFKRGAFLHKFQNGKMFQHGWDEFLESREVIQGVIDEY 434 The following BLAST results are available for this feature:
BLAST of CV885196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 414
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Sequences
The
following sequences are available for this feature:
EST sequence >CV885196 ID=CV885196; Name=CV885196; organism=Citrus sinensis; type=EST; length=879bpback to top |