CV885195
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 8.041e-37 Identity = 91/307 (29.64%), Postives = 148/307 (48.21%), Query Frame = 1 Query: 52 MREILHIQGGQCGNQIGAKFWEVICDEHG-IDHTGKYSGDSDLQLERINVYY----NEASGGRYVP---RAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDI---------------CFRTLKLATPTFG-----------DLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPL 870 M + + +Q GQCGNQIG FW++ EH ++ G Y ++ S GR RAVL+D+E G ++ + GP +F + SG+GNNWA GH G + +L+ +RK AE CDCLQ F + H + + +E+P+ +V+PS + D + PYN+ L++ +L E+AD + +DN++L+DI + L T G +N++++ + +T RF G LN DL ++++NL+PFP+LH+ + PL Sbjct: 1 MTQSVVVQVGQCGNQIGCCFWDLALREHAAVNQKGIYDDAISSFFRNVDTRAVGDGGSISKGRISSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGCLYREQILEKLRKSAEQCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTAVYPSSE-DDVITSPYNSMLAMKELNEHADCVLPIDNQSLFDIISKIDLVVNSGKLGSAVKPKSLITSNMGAVKKHHKKPFDAMNNIVANLLLSLTSSARFEGSLNMDLNEISMNLVPFPKLHYLVSSLTPL 306
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBA4B_HUMAN (Putative tubulin-like protein alpha-4B OS=Homo sapiens GN=TUBA4B PE=5 SV=2) HSP 1 Score: 150.984 bits (380), Expect = 8.891e-36 Identity = 78/203 (38.42%), Postives = 115/203 (56.65%), Query Frame = 1 Query: 256 EPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLI-------PFPRLH 843 +P S + G + QIF P+ + G+ A NN+A GHYT G E ID +LD +RK A+ C LQGF V H + + Y + L FS++P+P+VS +V+PYN+ L+ H +E++D ++DN+A+YDIC L + PT+ +LN LIS +S +T LRF G LN DL + NL+ P+P +H Sbjct: 10 DPSQPLSRQHGTYRQIFHPEQLITGKEDAANNYAWGHYTIGKEFIDLLLDRIRKLADQCTGLQGFLVFHSLGRGTGSDVTSFLMEWLSVNYGKKSKLGFSIYPAPQVSTAMVQPYNSILTTHTTLEHSDCAFMVDNKAIYDICHCNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVSYLTSTSPWPPMH 212
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBG_CANAL (Tubulin gamma chain OS=Candida albicans GN=TUB4 PE=3 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 2.677e-32 Identity = 95/314 (30.25%), Postives = 151/314 (48.09%), Query Frame = 1 Query: 58 EILHIQGGQCGNQIGAKFWEVICDEHGIDHTGK---YSGD-SDLQLERIN-------------------------VYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMML-TFSVFPSPK-VSDTVVEPYNATLSVHQLVENADECMVLDNEAL---YDICFRTLKLATPTFGDL----NHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR 879 E + +Q GQCGNQ+G ++W+ + EHGI G Y D +DLQL+ +N +++ + Y PR++L+D+EP + +S +F P N +GA NNW G Y G E +++L+++ +E + CD L FQ+ H + I + Y + +L TFS+FPS + SD VV+PYN L++ +L++ +D V N++L +I F DL N LI+ + V+ LRFPG + S + + NLIP P L F AP +++ Sbjct: 4 ETITLQVGQCGNQVGLQYWQQLATEHGIQSDGSSTPYPKDINDLQLQELNNSGSSPQSYPQQTKPNGKYRNDHPELFFTLSDSNTYTPRSILIDMEPSVI--AKSTSALPMFNPRNVHLSNQGNGAANNWING-YKYGTEEEETLLNLIDREVDKCDNLSNFQLFHSVAGGTGSGVGSKMLEVISDRYGHKKLLNTFSIFPSNEDTSDVVVQPYNTILTLKRLIDYSDATFVFHNDSLNRIENILFNNNSNIQHDDNDLFLGANKLIALVSASVSNPLRFPGYMYSSMESIVSNLIPTPDLKFLTSSIAPFSTQ 314
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBA4_CHICK (Tubulin alpha-4 chain (Fragment) OS=Gallus gallus PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.918e-30 Identity = 62/152 (40.79%), Postives = 94/152 (61.84%), Query Frame = 1 Query: 421 AENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS 876 A+ C LQGF + H + ++ +Y + L F+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + PT+ +LN LIS +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S Sbjct: 1 ADACSGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICCRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIIS 152
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBA8_CHICK (Tubulin alpha-8 chain (Fragment) OS=Gallus gallus PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 3.618e-29 Identity = 60/161 (37.27%), Postives = 94/161 (58.39%), Query Frame = 1 Query: 424 ENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALT 906 + C LQGF + H + ++ +Y + L F+++P+P+VS VVEPYN+ L+ H +E +D ++DNEA+YDIC R L + PT+ +LN LI +S +T LRF G LN DL + NL+P+PR+HF +V ++P+ S + L+ Sbjct: 2 DQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEQSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYSPIISAEKAYHEQLS 162
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 3.063e-28 Identity = 64/162 (39.51%), Postives = 92/162 (56.79%), Query Frame = 1 Query: 421 AENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALT 906 A+ C LQGF V H + ++ EY + L FSV+P +VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + PT+ +LN LI +S VT LRF G LN DL + NL+P+PR+HF + +A + S + L+ Sbjct: 1 ADQCSGLQGFLVFHSFGGGTGSGFTSLLMERLSVEYSKKSKLEFSVYPDRQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICNRNLDIERPTYTNLNRLIGQIVSSVTASLRFNGALNVDLIEFQTNLVPYPRIHFPLTTYARIISAEKAYHEQLS 162
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBD_XENTR (Tubulin delta chain OS=Xenopus tropicalis GN=tubd1 PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 4.577e-24 Identity = 70/238 (29.41%), Postives = 122/238 (51.26%), Query Frame = 1 Query: 61 ILHIQGGQCGNQIGAKFWEVIC-DEHGID-HTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRS--GPFGQIFRPDNFVFGQS-GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGV 759 ++ +Q GQCGNQ+G +F++++C D H H+ K D Q +++E G V RAVL+D+EP + S G G+ + F Q G GNNWA G+ G + D V+D+VRK+ E CD L GF +R+ YPD ++L ++P + +V+ YN+ L++ L ++D +V +N+ ++ +C + + + +F D+N +I+ + + Sbjct: 3 VVTVQLGQCGNQVGYEFFDILCSDLHSKPGHSTKRENDY-YQTVCKEQFFHEEECGDLVTRAVLVDMEPKVVSKTLSMAGRSGKWKYDISSQFSQKQGCGNNWANGYCVHGPKHQDIVMDLVRKQVEKCDRLGGFFTIMSMAGGTGSGMGTFLTRCLRDAYPDSLLLNQVIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLVHENDIIHKVCSQLMNIKQISFRDVNKVIAHQLGSI 238
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBD_CANFA (Tubulin delta chain OS=Canis familiaris GN=TUBD1 PE=2 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.332e-23 Identity = 72/295 (24.41%), Postives = 136/295 (46.10%), Query Frame = 1 Query: 61 ILHIQGGQCGNQIGAKFWEVI-CDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSV--RSGPFGQIFRPDNFVFGQS-GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGV---------TCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALT 906 ++ +Q GQCGNQIG + ++ + D H + Q +++E G + RAVL+D+EP ++ ++ GQ + F Q G+GNNWA G+ G +S++++++KE E CD L GF + ++++Y + + + ++P + +V+ YN+ L++ L ++D +V +N+A++ IC + + + +F D+N +++ + V +C R + L L NL+P P + P S S Y T Sbjct: 3 VVTVQLGQCGNQIGFEVFDALYSDSHCPQGLCSERENEAYQASSKERFFSEEENGVSIARAVLVDMEPKVINQTLSKAAQSGQWKYAQHSCFCQKEGSGNNWAYGYSVHGPRHEESIMNLIQKEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQNLQDQYSNSLKMNQIIWPY-GTGEVIVQNYNSVLTLSHLYRSSDALLVHENDAIHKICAKLMNIKQISFSDINQVLAHQLGSVFQPTYSVEGSCHYR-----RNPLGDLMENLVPHPEFKMLGIRNIPQMSENSLTYSTFT 291
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBD_HUMAN (Tubulin delta chain OS=Homo sapiens GN=TUBD1 PE=1 SV=2) HSP 1 Score: 108.227 bits (269), Expect = 6.609e-23 Identity = 72/291 (24.74%), Postives = 136/291 (46.74%), Query Frame = 1 Query: 61 ILHIQGGQCGNQIGAKFWE-VICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSV--RSGPFGQIFRPDNFVFGQS-GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGV-----TCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALT 906 I+ +Q GQCGNQIG + ++ ++ D H + Q +++E G + RAVL+D+EP ++ + ++ GQ + F Q G+GNNWA G+ G +S+++++RKE E CD GF + + ++Y + + + ++P + +V+ YN+ L++ L ++D ++ +N+A++ IC + + + +F D+N +++ + V + F + N L L +L+P P V P S S Y T Sbjct: 3 IVTVQLGQCGNQIGFEVFDALLSDSHSSQGLCSMRENEAYQASCKERFFSEEENGVPIARAVLVDMEPKVINQMLSKAAQSGQWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMNIIRKEVEKCDSFSGFFIIMSMAGGTGSGLGAFVTQNLEDQYSNSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLLHENDAIHKICAKLMNIKQISFSDINQVLAHQLGSVFQPTYSAESSFHYRRN-PLGDLMEHLVPHPEFKMLSVRNIPHMSENSLAYTTFT 291
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBD_MACFA (Tubulin delta chain OS=Macaca fascicularis GN=TUBD1 PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 1.127e-22 Identity = 72/295 (24.41%), Postives = 136/295 (46.10%), Query Frame = 1 Query: 61 ILHIQGGQCGNQIGAKFWE-VICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQ-------SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGV-----TCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALT 906 I+ +Q GQCGNQIG + ++ ++ D H + Q +++E G + RAVL+D+EP ++ S + + + +GQ G+GNNWA G+ G +S++D++RKE E CD GF + ++++Y + + + ++P + +V+ YN+ L++ L ++D +V +N+A++ IC + + + +F D+N +++ + V + F + N L L +L+P P + P S S Y T Sbjct: 3 IVTVQLGQCGNQIGFEVFDALLSDSHSSQGLCCKRENEAYQASCKERFFSEEENGVPIARAVLVDMEPKVINQTLS----KAAQSGRWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMDLIRKEVEKCDSFSGFFIIMSMAGGTGSGIGAFVTQNLQDQYSNSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLVHENDAVHKICAKLMNIKQISFSDINQVLAHQLGSVFQPTYSAESSFHYRRN-PLGDLMEHLVPHPEFKMLSIRNVPHMSENSLAYSTFT 291 The following BLAST results are available for this feature:
BLAST of CV885195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 425
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CV885195 ID=CV885195; Name=CV885195; organism=Citrus sinensis; type=EST; length=907bpback to top |