CV885195

Overview
NameCV885195
Unique NameCV885195
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 8.041e-37
Identity = 91/307 (29.64%), Postives = 148/307 (48.21%), Query Frame = 1
Query:   52 MREILHIQGGQCGNQIGAKFWEVICDEHG-IDHTGKYSGDSDLQLERINVYY----NEASGGRYVP---RAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDI---------------CFRTLKLATPTFG-----------DLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPL 870
            M + + +Q GQCGNQIG  FW++   EH  ++  G Y          ++          S GR      RAVL+D+E G ++ +  GP   +F     +   SG+GNNWA GH   G    + +L+ +RK AE CDCLQ F + H              +  + +E+P+      +V+PS +  D +  PYN+ L++ +L E+AD  + +DN++L+DI                 +   L T   G            +N++++  +  +T   RF G LN DL ++++NL+PFP+LH+ +    PL
Sbjct:    1 MTQSVVVQVGQCGNQIGCCFWDLALREHAAVNQKGIYDDAISSFFRNVDTRAVGDGGSISKGRISSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGCLYREQILEKLRKSAEQCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTAVYPSSE-DDVITSPYNSMLAMKELNEHADCVLPIDNQSLFDIISKIDLVVNSGKLGSAVKPKSLITSNMGAVKKHHKKPFDAMNNIVANLLLSLTSSARFEGSLNMDLNEISMNLVPFPKLHYLVSSLTPL 306          
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBA4B_HUMAN (Putative tubulin-like protein alpha-4B OS=Homo sapiens GN=TUBA4B PE=5 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 8.891e-36
Identity = 78/203 (38.42%), Postives = 115/203 (56.65%), Query Frame = 1
Query:  256 EPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLI-------PFPRLH 843
            +P    S + G + QIF P+  + G+  A NN+A GHYT G E ID +LD +RK A+ C  LQGF V H              +  +   Y  +  L FS++P+P+VS  +V+PYN+ L+ H  +E++D   ++DN+A+YDIC   L +  PT+ +LN LIS  +S +T  LRF G LN DL +   NL+       P+P +H
Sbjct:   10 DPSQPLSRQHGTYRQIFHPEQLITGKEDAANNYAWGHYTIGKEFIDLLLDRIRKLADQCTGLQGFLVFHSLGRGTGSDVTSFLMEWLSVNYGKKSKLGFSIYPAPQVSTAMVQPYNSILTTHTTLEHSDCAFMVDNKAIYDICHCNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVSYLTSTSPWPPMH 212          
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBG_CANAL (Tubulin gamma chain OS=Candida albicans GN=TUB4 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.677e-32
Identity = 95/314 (30.25%), Postives = 151/314 (48.09%), Query Frame = 1
Query:   58 EILHIQGGQCGNQIGAKFWEVICDEHGIDHTGK---YSGD-SDLQLERIN-------------------------VYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMML-TFSVFPSPK-VSDTVVEPYNATLSVHQLVENADECMVLDNEAL---YDICFRTLKLATPTFGDL----NHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR 879
            E + +Q GQCGNQ+G ++W+ +  EHGI   G    Y  D +DLQL+ +N                         +++  +    Y PR++L+D+EP  +   +S     +F P N       +GA NNW  G Y  G E  +++L+++ +E + CD L  FQ+ H              +  I + Y  + +L TFS+FPS +  SD VV+PYN  L++ +L++ +D   V  N++L    +I F           DL    N LI+   + V+  LRFPG + S +  +  NLIP P L F     AP +++
Sbjct:    4 ETITLQVGQCGNQVGLQYWQQLATEHGIQSDGSSTPYPKDINDLQLQELNNSGSSPQSYPQQTKPNGKYRNDHPELFFTLSDSNTYTPRSILIDMEPSVI--AKSTSALPMFNPRNVHLSNQGNGAANNWING-YKYGTEEEETLLNLIDREVDKCDNLSNFQLFHSVAGGTGSGVGSKMLEVISDRYGHKKLLNTFSIFPSNEDTSDVVVQPYNTILTLKRLIDYSDATFVFHNDSLNRIENILFNNNSNIQHDDNDLFLGANKLIALVSASVSNPLRFPGYMYSSMESIVSNLIPTPDLKFLTSSIAPFSTQ 314          
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBA4_CHICK (Tubulin alpha-4 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.918e-30
Identity = 62/152 (40.79%), Postives = 94/152 (61.84%), Query Frame = 1
Query:  421 AENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS 876
            A+ C  LQGF + H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PT+ +LN LIS  +S +T  LRF G LN DL +   NL+P+PR+HF +V +AP+ S
Sbjct:    1 ADACSGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICCRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIIS 152          
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBA8_CHICK (Tubulin alpha-8 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.618e-29
Identity = 60/161 (37.27%), Postives = 94/161 (58.39%), Query Frame = 1
Query:  424 ENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALT 906
            + C  LQGF + H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E +D   ++DNEA+YDIC R L +  PT+ +LN LI   +S +T  LRF G LN DL +   NL+P+PR+HF +V ++P+ S     +  L+
Sbjct:    2 DQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEQSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYSPIISAEKAYHEQLS 162          
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.063e-28
Identity = 64/162 (39.51%), Postives = 92/162 (56.79%), Query Frame = 1
Query:  421 AENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALT 906
            A+ C  LQGF V H              + ++  EY  +  L FSV+P  +VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PT+ +LN LI   +S VT  LRF G LN DL +   NL+P+PR+HF +  +A + S     +  L+
Sbjct:    1 ADQCSGLQGFLVFHSFGGGTGSGFTSLLMERLSVEYSKKSKLEFSVYPDRQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICNRNLDIERPTYTNLNRLIGQIVSSVTASLRFNGALNVDLIEFQTNLVPYPRIHFPLTTYARIISAEKAYHEQLS 162          
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBD_XENTR (Tubulin delta chain OS=Xenopus tropicalis GN=tubd1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.577e-24
Identity = 70/238 (29.41%), Postives = 122/238 (51.26%), Query Frame = 1
Query:   61 ILHIQGGQCGNQIGAKFWEVIC-DEHGID-HTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRS--GPFGQIFRPDNFVFGQS-GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGV 759
            ++ +Q GQCGNQ+G +F++++C D H    H+ K   D   Q      +++E   G  V RAVL+D+EP  +    S  G  G+     +  F Q  G GNNWA G+   G +  D V+D+VRK+ E CD L GF                     +R+ YPD ++L   ++P     + +V+ YN+ L++  L  ++D  +V +N+ ++ +C + + +   +F D+N +I+  +  +
Sbjct:    3 VVTVQLGQCGNQVGYEFFDILCSDLHSKPGHSTKRENDY-YQTVCKEQFFHEEECGDLVTRAVLVDMEPKVVSKTLSMAGRSGKWKYDISSQFSQKQGCGNNWANGYCVHGPKHQDIVMDLVRKQVEKCDRLGGFFTIMSMAGGTGSGMGTFLTRCLRDAYPDSLLLNQVIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLVHENDIIHKVCSQLMNIKQISFRDVNKVIAHQLGSI 238          
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBD_CANFA (Tubulin delta chain OS=Canis familiaris GN=TUBD1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.332e-23
Identity = 72/295 (24.41%), Postives = 136/295 (46.10%), Query Frame = 1
Query:   61 ILHIQGGQCGNQIGAKFWEVI-CDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSV--RSGPFGQIFRPDNFVFGQS-GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGV---------TCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALT 906
            ++ +Q GQCGNQIG + ++ +  D H          +   Q      +++E   G  + RAVL+D+EP  ++    ++   GQ     +  F Q  G+GNNWA G+   G    +S++++++KE E CD L GF +                   ++++Y + + +   ++P     + +V+ YN+ L++  L  ++D  +V +N+A++ IC + + +   +F D+N +++  +  V         +C  R      + L  L  NL+P P      +   P  S  S  Y   T
Sbjct:    3 VVTVQLGQCGNQIGFEVFDALYSDSHCPQGLCSERENEAYQASSKERFFSEEENGVSIARAVLVDMEPKVINQTLSKAAQSGQWKYAQHSCFCQKEGSGNNWAYGYSVHGPRHEESIMNLIQKEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQNLQDQYSNSLKMNQIIWPY-GTGEVIVQNYNSVLTLSHLYRSSDALLVHENDAIHKICAKLMNIKQISFSDINQVLAHQLGSVFQPTYSVEGSCHYR-----RNPLGDLMENLVPHPEFKMLGIRNIPQMSENSLTYSTFT 291          
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBD_HUMAN (Tubulin delta chain OS=Homo sapiens GN=TUBD1 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 6.609e-23
Identity = 72/291 (24.74%), Postives = 136/291 (46.74%), Query Frame = 1
Query:   61 ILHIQGGQCGNQIGAKFWE-VICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSV--RSGPFGQIFRPDNFVFGQS-GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGV-----TCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALT 906
            I+ +Q GQCGNQIG + ++ ++ D H          +   Q      +++E   G  + RAVL+D+EP  ++ +  ++   GQ     +  F Q  G+GNNWA G+   G    +S+++++RKE E CD   GF +                   + ++Y + + +   ++P     + +V+ YN+ L++  L  ++D  ++ +N+A++ IC + + +   +F D+N +++  +  V     +    F  + N  L  L  +L+P P      V   P  S  S  Y   T
Sbjct:    3 IVTVQLGQCGNQIGFEVFDALLSDSHSSQGLCSMRENEAYQASCKERFFSEEENGVPIARAVLVDMEPKVINQMLSKAAQSGQWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMNIIRKEVEKCDSFSGFFIIMSMAGGTGSGLGAFVTQNLEDQYSNSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLLHENDAIHKICAKLMNIKQISFSDINQVLAHQLGSVFQPTYSAESSFHYRRN-PLGDLMEHLVPHPEFKMLSVRNIPHMSENSLAYTTFT 291          
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBD_MACFA (Tubulin delta chain OS=Macaca fascicularis GN=TUBD1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.127e-22
Identity = 72/295 (24.41%), Postives = 136/295 (46.10%), Query Frame = 1
Query:   61 ILHIQGGQCGNQIGAKFWE-VICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQ-------SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGV-----TCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALT 906
            I+ +Q GQCGNQIG + ++ ++ D H          +   Q      +++E   G  + RAVL+D+EP  ++   S    +  +   + +GQ        G+GNNWA G+   G    +S++D++RKE E CD   GF +                   ++++Y + + +   ++P     + +V+ YN+ L++  L  ++D  +V +N+A++ IC + + +   +F D+N +++  +  V     +    F  + N  L  L  +L+P P      +   P  S  S  Y   T
Sbjct:    3 IVTVQLGQCGNQIGFEVFDALLSDSHSSQGLCCKRENEAYQASCKERFFSEEENGVPIARAVLVDMEPKVINQTLS----KAAQSGRWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMDLIRKEVEKCDSFSGFFIIMSMAGGTGSGIGAFVTQNLQDQYSNSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLVHENDAVHKICAKLMNIKQISFSDINQVLAHQLGSVFQPTYSAESSFHYRRN-PLGDLMEHLVPHPEFKMLSIRNVPHMSENSLAYSTFT 291          
The following BLAST results are available for this feature:
BLAST of CV885195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 425
Match NameE-valueIdentityDescription
TBE_MOUSE8.041e-3729.64Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=... [more]
TBA4B_HUMAN8.891e-3638.42Putative tubulin-like protein alpha-4B OS=Homo sap... [more]
TBG_CANAL2.677e-3230.25Tubulin gamma chain OS=Candida albicans GN=TUB4 PE... [more]
TBA4_CHICK1.918e-3040.79Tubulin alpha-4 chain (Fragment) OS=Gallus gallus ... [more]
TBA8_CHICK3.618e-2937.27Tubulin alpha-8 chain (Fragment) OS=Gallus gallus ... [more]
TBA3_CHICK3.063e-2839.51Tubulin alpha-3 chain (Fragment) OS=Gallus gallus ... [more]
TBD_XENTR4.577e-2429.41Tubulin delta chain OS=Xenopus tropicalis GN=tubd1... [more]
TBD_CANFA1.332e-2324.41Tubulin delta chain OS=Canis familiaris GN=TUBD1 P... [more]
TBD_HUMAN6.609e-2324.74Tubulin delta chain OS=Homo sapiens GN=TUBD1 PE=1 ... [more]
TBD_MACFA1.127e-2224.41Tubulin delta chain OS=Macaca fascicularis GN=TUBD... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013C02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885195 ID=CV885195; Name=CV885195; organism=Citrus sinensis; type=EST; length=907bp
CTTTCTCGCAAATTTTTCTCTCCCTTTCCCGCGAAACAAACAGAACAAAA
AATGAGAGAAATCTTGCACATCCAGGGTGGGCAATGCGGCAACCAGATCG
GAGCCAAGTTCTGGGAGGTCATCTGCGACGAGCACGGAATTGACCACACG
GGGAAGTACAGCGGAGACTCCGATCTCCAACTCGAACGCATCAATGTTTA
TTACAACGAGGCCAGCGGCGGAAGGTACGTCCCACGCGCCGTGTTGATGG
ATCTGGAGCCTGGGACGATGGACTCTGTTAGATCCGGTCCGTTCGGGCAG
ATATTTCGCCCCGATAACTTCGTGTTCGGGCAGTCTGGCGCTGGCAATAA
CTGGGCCAAGGGTCATTACACCGAAGGCGCTGAGTTGATCGACTCTGTTC
TGGATGTTGTTAGAAAGGAAGCTGAGAATTGTGATTGCTTGCAGGGATTT
CAAGTATGTCATTCTTTGGGAGGAGGTACTGGTTCTGGTATGGGAACCCT
TCTTATTTCCAAGATCAGGGAGGAGTATCCAGATCGCATGATGTTGACAT
TTTCCGTCTTCCCGTCTCCTAAGGTATCTGACACGGTTGTTGAGCCTTAC
AATGCTACCCTCTCAGTACATCAGCTTGTTGAGAATGCCGATGAATGTAT
GGTGCTAGATAATGAAGCTCTATATGATATTTGCTTCAGAACTCTCAAGC
TCGCCACCCCTACTTTTGGTGATCTTAACCATCTTATCTCTGCTACCATG
AGTGGCGTCACATGCTGTCTTCGATTCCCCGGACAGCTGAACTCTGACCT
CAGGAAGCTTGCTGTTAACCTTATCCCTTTCCCGCGTCTCCATTTCTTCA
TGGTTGGGTTTGCACCCTTGACATCACGAGGATCACAGCAGTATCGTGCC
CTTACTG
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