CV885195

Overview
NameCV885195
Unique NameCV885195
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig512 contig Csv1_Contig512:107..1013. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBD_MOUSE (Tubulin delta chain OS=Mus musculus GN=Tubd1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.595e-22
Identity = 74/299 (24.75%), Postives = 135/299 (45.15%), Query Frame = 1
Query:   61 ILHIQGGQCGNQIGAKFWEVIC-DEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQ-------SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSD---------LRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALT 906
            I+ +Q GQCGNQIG + ++ +  D H          +   Q      ++ E   G  V RAVL+D+EP  ++   S    +  +   + +GQ        G+GNNWA G+   G +  +S++++++ E E CD L GF +                  K++++Y   + +   ++P     + +V+ YN+ L++  L  ++D  ++ +N+A++ IC + + +   +F DLN +++  +  V     F    + D         L  L  +L+P P      V   P  S  S  Y A T
Sbjct:    3 IVTVQLGQCGNQIGFEVFDALFRDSHCSQGLCSKRDNEAYQASCRERFFREEENGVPVARAVLVDMEPKVINQTLS----KAAQSGRWNYGQHTSFCQKQGSGNNWAYGYSVHGPKHEESIMNLIQTEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQKLQDQYSSSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLIHENDAVHKICAKRMNIKQISFRDLNQVLAHQLGSV-----FQPTYSEDSSFHYRRNPLGDLMEHLVPHPEFKMLGVRNIPQMSAASLAYSAFT 291          
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBA_PICAB (Tubulin alpha chain (Fragment) OS=Picea abies GN=TUBA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.126e-21
Identity = 47/109 (43.12%), Postives = 70/109 (64.22%), Query Frame = 1
Query:  112 WEVICDEHGIDHTGKYSGDSDLQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENC 432
            WE+   EHGI   G    D+ + +  +  N +++E   G++VPRAV +DLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK A+NC
Sbjct:    2 WELYWLEHGIQPDGMMPSDTTVGVGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGEEIVDLCLDRVRKLADNC 110          
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBGN_GUITH (Tubulin gamma chain, nucleomorph OS=Guillardia theta GN=tubG PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.277e-15
Identity = 67/278 (24.10%), Postives = 121/278 (43.53%), Query Frame = 1
Query:   58 EILHIQGGQCGNQIGAKFWEVICDEHGI---DHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVV-EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR 879
            EIL +Q G+ G   G +FW+ +  E  +      GK S  +D      NV++ E++   ++PR ++ DL     + +    + +++  +         GN+W KG+Y EG    + V +++RK  E  + ++ F V +              I  IR  YP   +   S+FP    +  V  +PYN+ LS+       D  +   N A+ ++  +       +F  +N++I  T+S +   L     L + +  L VN  P+  L F  +    L S+
Sbjct:    4 EILTLQVGKTGILTGNEFWKSLVREKNLLSDFSLGKNSPTND------NVFFEESNESFFIPRTIIFDLSERDFNYIMKSNYSKMYDKNRHFILNKNTGNSWLKGYY-EGISNCNLVDNILRKRIEKMNSVKYFNVFNSINGGTGAGLSSYLIEYIRNNYPKSFINCCSIFPDLYGNTQVTFQPYNSVLSIAWQGLYCDSNIFFQNHAIENLLTKNQINNELSFRKVNYIIGKTISIIMNTLNHNFTLETLISPLIVN--PYLNLFFSTINIDILLSK 272          
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBAA_PNECA (Tubulin alpha chain (Fragment) OS=Pneumocystis carinii GN=TUB-A PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.651e-15
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  655 LDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRA 900
            +DNEA+YDIC R L +  P + +LN LI+  +S +T  LRF G LN DL +   NL+P+PR+HF +V +AP+ S     + A
Sbjct:    1 VDNEAIYDICRRNLGIERPGYTNLNRLIAHVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVTYAPVISAAKAVHEA 82          
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBA_OCTVU (Tubulin alpha chain (Fragment) OS=Octopus vulgaris PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.443e-11
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 1
Query:  679 ICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS 876
            IC R L +  P++ +LN LIS  +S +T  LRF G LN DL +   NL+P+PR+HF +V +AP+ S
Sbjct:    1 ICKRNLDIERPSYTNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIIS 66          
The following BLAST results are available for this feature:
BLAST of CV885195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 425
Match NameE-valueIdentityDescription
TBD_MOUSE5.595e-2224.75Tubulin delta chain OS=Mus musculus GN=Tubd1 PE=2 ... [more]
TBA_PICAB2.126e-2143.12Tubulin alpha chain (Fragment) OS=Picea abies GN=T... [more]
TBGN_GUITH2.277e-1524.10Tubulin gamma chain, nucleomorph OS=Guillardia the... [more]
TBAA_PNECA8.651e-1545.12Tubulin alpha chain (Fragment) OS=Pneumocystis car... [more]
TBA_OCTVU4.443e-1146.97Tubulin alpha chain (Fragment) OS=Octopus vulgaris... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013C02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885195 ID=CV885195; Name=CV885195; organism=Citrus sinensis; type=EST; length=907bp
CTTTCTCGCAAATTTTTCTCTCCCTTTCCCGCGAAACAAACAGAACAAAA
AATGAGAGAAATCTTGCACATCCAGGGTGGGCAATGCGGCAACCAGATCG
GAGCCAAGTTCTGGGAGGTCATCTGCGACGAGCACGGAATTGACCACACG
GGGAAGTACAGCGGAGACTCCGATCTCCAACTCGAACGCATCAATGTTTA
TTACAACGAGGCCAGCGGCGGAAGGTACGTCCCACGCGCCGTGTTGATGG
ATCTGGAGCCTGGGACGATGGACTCTGTTAGATCCGGTCCGTTCGGGCAG
ATATTTCGCCCCGATAACTTCGTGTTCGGGCAGTCTGGCGCTGGCAATAA
CTGGGCCAAGGGTCATTACACCGAAGGCGCTGAGTTGATCGACTCTGTTC
TGGATGTTGTTAGAAAGGAAGCTGAGAATTGTGATTGCTTGCAGGGATTT
CAAGTATGTCATTCTTTGGGAGGAGGTACTGGTTCTGGTATGGGAACCCT
TCTTATTTCCAAGATCAGGGAGGAGTATCCAGATCGCATGATGTTGACAT
TTTCCGTCTTCCCGTCTCCTAAGGTATCTGACACGGTTGTTGAGCCTTAC
AATGCTACCCTCTCAGTACATCAGCTTGTTGAGAATGCCGATGAATGTAT
GGTGCTAGATAATGAAGCTCTATATGATATTTGCTTCAGAACTCTCAAGC
TCGCCACCCCTACTTTTGGTGATCTTAACCATCTTATCTCTGCTACCATG
AGTGGCGTCACATGCTGTCTTCGATTCCCCGGACAGCTGAACTCTGACCT
CAGGAAGCTTGCTGTTAACCTTATCCCTTTCCCGCGTCTCCATTTCTTCA
TGGTTGGGTTTGCACCCTTGACATCACGAGGATCACAGCAGTATCGTGCC
CTTACTG
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