CV885195
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBD_MOUSE (Tubulin delta chain OS=Mus musculus GN=Tubd1 PE=2 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 5.595e-22 Identity = 74/299 (24.75%), Postives = 135/299 (45.15%), Query Frame = 1 Query: 61 ILHIQGGQCGNQIGAKFWEVIC-DEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQ-------SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSD---------LRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALT 906 I+ +Q GQCGNQIG + ++ + D H + Q ++ E G V RAVL+D+EP ++ S + + + +GQ G+GNNWA G+ G + +S++++++ E E CD L GF + K++++Y + + ++P + +V+ YN+ L++ L ++D ++ +N+A++ IC + + + +F DLN +++ + V F + D L L +L+P P V P S S Y A T Sbjct: 3 IVTVQLGQCGNQIGFEVFDALFRDSHCSQGLCSKRDNEAYQASCRERFFREEENGVPVARAVLVDMEPKVINQTLS----KAAQSGRWNYGQHTSFCQKQGSGNNWAYGYSVHGPKHEESIMNLIQTEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQKLQDQYSSSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLIHENDAVHKICAKRMNIKQISFRDLNQVLAHQLGSV-----FQPTYSEDSSFHYRRNPLGDLMEHLVPHPEFKMLGVRNIPQMSAASLAYSAFT 291
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBA_PICAB (Tubulin alpha chain (Fragment) OS=Picea abies GN=TUBA PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 2.126e-21 Identity = 47/109 (43.12%), Postives = 70/109 (64.22%), Query Frame = 1 Query: 112 WEVICDEHGIDHTGKYSGDSDLQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENC 432 WE+ EHGI G D+ + + + N +++E G++VPRAV +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D LD VRK A+NC Sbjct: 2 WELYWLEHGIQPDGMMPSDTTVGVGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGEEIVDLCLDRVRKLADNC 110
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBGN_GUITH (Tubulin gamma chain, nucleomorph OS=Guillardia theta GN=tubG PE=3 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 2.277e-15 Identity = 67/278 (24.10%), Postives = 121/278 (43.53%), Query Frame = 1 Query: 58 EILHIQGGQCGNQIGAKFWEVICDEHGI---DHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVV-EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR 879 EIL +Q G+ G G +FW+ + E + GK S +D NV++ E++ ++PR ++ DL + + + +++ + GN+W KG+Y EG + V +++RK E + ++ F V + I IR YP + S+FP + V +PYN+ LS+ D + N A+ ++ + +F +N++I T+S + L L + + L VN P+ L F + L S+ Sbjct: 4 EILTLQVGKTGILTGNEFWKSLVREKNLLSDFSLGKNSPTND------NVFFEESNESFFIPRTIIFDLSERDFNYIMKSNYSKMYDKNRHFILNKNTGNSWLKGYY-EGISNCNLVDNILRKRIEKMNSVKYFNVFNSINGGTGAGLSSYLIEYIRNNYPKSFINCCSIFPDLYGNTQVTFQPYNSVLSIAWQGLYCDSNIFFQNHAIENLLTKNQINNELSFRKVNYIIGKTISIIMNTLNHNFTLETLISPLIVN--PYLNLFFSTINIDILLSK 272
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBAA_PNECA (Tubulin alpha chain (Fragment) OS=Pneumocystis carinii GN=TUB-A PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 8.651e-15 Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 1 Query: 655 LDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRA 900 +DNEA+YDIC R L + P + +LN LI+ +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + A Sbjct: 1 VDNEAIYDICRRNLGIERPGYTNLNRLIAHVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVTYAPVISAAKAVHEA 82
BLAST of CV885195 vs. ExPASy Swiss-Prot
Match: TBA_OCTVU (Tubulin alpha chain (Fragment) OS=Octopus vulgaris PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.443e-11 Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 1 Query: 679 ICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS 876 IC R L + P++ +LN LIS +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S Sbjct: 1 ICKRNLDIERPSYTNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIIS 66 The following BLAST results are available for this feature:
BLAST of CV885195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 425
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Sequences
The
following sequences are available for this feature:
EST sequence >CV885195 ID=CV885195; Name=CV885195; organism=Citrus sinensis; type=EST; length=907bpback to top |