CV885190

Overview
NameCV885190
Unique NameCV885190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8139 contig Csv1_Contig8139:752..1595. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: SSG1_ORYGL (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza glaberrima GN=WAXY PE=1 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.377e-63
Identity = 119/187 (63.64%), Postives = 141/187 (75.40%), Query Frame = -3
Query:  282 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 842
            P  ++E+VQI++LGTGKK  EK L+ +E  YP K R V KFN PLAH+I+AGAD + +PSRFEPCGLIQL  MRYGT    ASTGGLVDTV EG TGF MG  SV+C+ V+P DV  V+ T++RA+   GT A  EM++N M QDLSWKGPAK WE  LL L VAGS PGI+G+EIAPLAKENVA P
Sbjct:  423 PELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVNCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMVRNCMNQDLSWKGPAKNWENVLLGLGVAGSAPGIEGDEIAPLAKENVAAP 609          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: SSG1_SORBI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Sorghum bicolor GN=WAXY PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.676e-62
Identity = 118/187 (63.10%), Postives = 138/187 (73.80%), Query Frame = -3
Query:  282 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 842
            P  ++E++QI++LGTGKK  E+ L   E  YP+K R V KFN  LAH I+AGAD + + SRFEPCGLIQL  MRYGT    ASTGGLVDT+ EG TGF MG  SVDC  V+P DV  V+TT++RA+   GT A  EM+KN M QDLSWKGPAK WE  LL+L VAG EPGI+GEEIAPLAKENVA P
Sbjct:  422 PLLMEEDIQIVLLGTGKKKFERMLMSAEEKYPDKVRAVVKFNAALAHHIMAGADLLAVTSRFEPCGLIQLQGMRYGTPCACASTGGLVDTIIEGKTGFHMGRLSVDCNVVEPADVKKVATTLKRAIKVVGTPAYEEMVKNCMIQDLSWKGPAKNWENVLLSLGVAGGEPGIEGEEIAPLAKENVAAP 608          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: SSG1_HORVU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Hordeum vulgare GN=WAXY PE=1 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 8.317e-62
Identity = 119/188 (63.30%), Postives = 139/188 (73.94%), Query Frame = -3
Query:  282 PHFIKE-NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 842
            P  +KE +VQII+LGTGKK  EK L+ +E  +P K R V +FN PLAH ++AGAD + + SRFEPCGLIQL  MRYGT  + ASTGGLVDT+ EG TGF MG  SVDC  V+P DV  V+TT++RA+   GT A  EM+KN M QDLSWKGPAK WE+ LL L V GSEPGI GEEIAPLA ENVA P
Sbjct:  416 PEILKEEDVQIILLGTGKKKFEKLLKSMEEKFPGKVRAVVRFNAPLAHQMMAGADLLAVTSRFEPCGLIQLQGMRYGTPCVCASTGGLVDTIVEGKTGFHMGRLSVDCNVVEPADVKKVATTLKRAVKVVGTPAYQEMVKNCMIQDLSWKGPAKNWEDVLLELGVEGSEPGIVGEEIAPLAMENVAAP 603          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: SSG1_WHEAT (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WAXY PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.676e-60
Identity = 117/188 (62.23%), Postives = 137/188 (72.87%), Query Frame = -3
Query:  282 PHFIKE-NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 842
            P  +KE +VQI++LGTGKK  E+ L+ +E  +P K R V +FN PLAH ++AGAD + + SRFEPCGLIQL  MRYGT    ASTGGLVDT+ EG TGF MG  SVDC  V+P DV  V TT++RA+   GT A  EM+KN M QDLSWKGPAK WE+ LL L V GSEPGI GEEIAPLA ENVA P
Sbjct:  428 PEIVKEEDVQIVLLGTGKKKFERLLKSVEEKFPTKVRAVVRFNAPLAHQMMAGADVLAVTSRFEPCGLIQLQGMRYGTPCACASTGGLVDTIVEGKTGFHMGRLSVDCNVVEPADVKKVVTTLKRAVKVVGTPAYHEMVKNCMIQDLSWKGPAKNWEDVLLELGVEGSEPGIVGEEIAPLALENVAAP 615          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: SSG1_MAIZE (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Zea mays GN=WAXY PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.676e-60
Identity = 115/182 (63.19%), Postives = 134/182 (73.63%), Query Frame = -3
Query:  282 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 827
            E+VQI++LGTGKK  E+ L   E  +P K R V KFN  LAH I+AGAD + + SRFEPCGLIQL  MRYGT    ASTGGLVDT+ EG TGF MG  SVDC  V+P DV  V+TT++RA+   GT A  EM++N M QDLSWKGPAK WE  LL+L VAG EPG++GEEIAPLAKENVA P
Sbjct:  424 EDVQIVLLGTGKKKFERMLMSAEEKFPGKVRAVVKFNAALAHHIMAGADVLAVTSRFEPCGLIQLQGMRYGTPCACASTGGLVDTIIEGKTGFHMGRLSVDCNVVEPADVKKVATTLQRAIKVVGTPAYEEMVRNCMIQDLSWKGPAKNWENVLLSLGVAGGEPGVEGEEIAPLAKENVAAP 605          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: SSY1_SOLTU (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.286e-27
Identity = 64/159 (40.25%), Postives = 97/159 (61.01%), Query Frame = -3
Query:  372 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKWEE 842
            P  ++ +VQ+++LG+G+K  E  +   E L+ +K R    FN+P++H I AG D +L+PSRFEPCGL QL+AMRYGT+PIV STGGL DTV++     Q G          P+    +  T++ A+ TY     +   +M+ GM +D SW+  A ++E+
Sbjct:  470 PELMQNDVQVVMLGSGEKQYEDWMRHTENLFKDKFRAWVGFNVPVSHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPIVHSTGGLRDTVKDFNPYAQEGIGEGTGWTFSPLTSEKLLDTLKLAIGTYTEHKSSWEGLMRRGMGRDYSWENAAIQYEQ 628          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: SSY1_ARATH (Soluble starch synthase, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=At5g24300 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.687e-27
Identity = 62/159 (38.99%), Postives = 97/159 (61.01%), Query Frame = -3
Query:  372 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG--TQALAEMMKNGMAQDLSWKGPAKKWEE 842
            P  + +++Q ++LG+G    E  +  +E  Y +K RG   FN+P++H I AG D +L+PSRFEPCGL QL+AMRYGT+P+V  TGGL DTVE      + G+ +       P+   ++ + +R A ATY    Q+   +M+ GM ++ SW+  A ++E+
Sbjct:  481 PDLMVDDIQFVMLGSGDPKYESWMRSMEETYRDKFRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPVVHGTGGLRDTVENFNPYAEGGAGTGTGWVFTPLSKDSMVSALRLAAATYREYKQSWEGLMRRGMTRNYSWENAAVQYEQ 639          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_THEYD (Glycogen synthase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=glgA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.482e-26
Identity = 65/158 (41.14%), Postives = 89/158 (56.33%), Query Frame = -3
Query:  372 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT-QALAEMMKNGMAQDLSWKGPAKKWEE 842
            P+ IK  +  I  GTG+   E ++ +L+  YP K      F+  LAH I AGAD +L+PSR+EPCGL QL AMRYGT+PI   TGGL DTVE+  TGF    +S           +A++  + R +  Y   Q   EM++  M +D SW   +KK+ E
Sbjct:  334 PNLIKNGISFIFEGTGESYYEHKIRELQNSYPSKVFAFIGFDEALAHKIYAGADSLLVPSRYEPCGLSQLIAMRYGTIPICRKTGGLSDTVEDKVTGFLFSEYS----------SSALTHAISRFIEIYNNKQKFLEMIREAMKRDFSWSNSSKKYIE 481          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: SSY1_ORYSJ (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=Os06g0160700 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.528e-26
Identity = 63/159 (39.62%), Postives = 94/159 (59.12%), Query Frame = -3
Query:  372 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKWEE 842
            P  +++N+Q ++LG+G    E  +   E  Y +K RG   F++P++H I AG D +L+PSRFEPCGL QL+AM+YGTVP+V  TGGL DTV E F  F          A  P+ +  +   +R A++TY     +   +MK GM+ D +W   A ++E+
Sbjct:  471 PDLMRDNIQFVMLGSGDPGFEGWMRSTESGYRDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTV-ENFNPFAEKGEQGTGWAFSPLTIEKMLWALRMAISTYREHKSSWEGLMKRGMSSDFTWDHAASQYEQ 628          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: SSY1_ORYSI (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=OsI_021017 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.528e-26
Identity = 63/159 (39.62%), Postives = 94/159 (59.12%), Query Frame = -3
Query:  372 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKWEE 842
            P  +++N+Q ++LG+G    E  +   E  Y +K RG   F++P++H I AG D +L+PSRFEPCGL QL+AM+YGTVP+V  TGGL DTV E F  F          A  P+ +  +   +R A++TY     +   +MK GM+ D +W   A ++E+
Sbjct:  471 PDLMRDNIQFVMLGSGDPGFEGWMRSTESGYRDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTV-ENFNPFAEKGEQGTGWAFSPLTIEKMLWALRMAISTYREHKSSWEGLMKRGMSSDFTWDHAASQYEQ 628          
The following BLAST results are available for this feature:
BLAST of CV885190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
SSG1_ORYGL3.377e-6363.64Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SORBI1.676e-6263.10Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_HORVU8.317e-6263.30Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_WHEAT2.676e-6062.23Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_MAIZE2.676e-6063.19Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSY1_SOLTU2.286e-2740.25Soluble starch synthase 1, chloroplastic/amyloplas... [more]
SSY1_ARATH8.687e-2738.99Soluble starch synthase, chloroplastic/amyloplasti... [more]
GLGA_THEYD1.482e-2641.14Glycogen synthase OS=Thermodesulfovibrio yellowsto... [more]
SSY1_ORYSJ2.528e-2639.62Soluble starch synthase 1, chloroplastic/amyloplas... [more]
SSY1_ORYSI2.528e-2639.62Soluble starch synthase 1, chloroplastic/amyloplas... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885190 ID=CV885190; Name=CV885190; organism=Citrus sinensis; type=EST; length=844bp
TTTTTTTTTTTTGATCTATAAACTTGTTCAGTTGAACTTTTTCATTTCAG
GAGAGTGGCGACAGCCCTCAGAGCCCTTTTACAAAACTGTAAAACAGAAC
TTAATATTTCATTATACAAGGTAAACACTAATGTCTCAACTCCAAACCAT
TATTGAAAATAGCGCATGCTGCATATACTGCCAACCTATGTTATTTCCTA
AGTAATATCTTGGGTTGTGGAGAATTACAGGAACATGTTTGCGGTCCAAA
ATAAAAGTGGAGATTTTTGTAGCCTCGATCAAGGAGTGGCCACATTTTCC
TTGGCAAGAGGAGCAATTTCTTCGCCGTCAATTCCAGGTTCACTACCAGC
AACTTCCAGGTTAAGTAGGGTCTCCTCCCATTTCTTAGCTGGTCCTTTCC
ATGAAAGATCTTGAGCCATGCCATTTTTCATCATTTCAGCCAAAGCTTGA
GTACCATAGGTTGCAAGAGCTCTTCTGACGGTTGTGGACACTGCAGCCAC
ATCTACTGGATCCACAGCCTCACAGTCAACACTGAAGCTTCCCATCTGGA
ATCCTGTAAAGCCTTCTTCCACAGTGTCAACCAAACCACCAGTGGAAGCC
ACGATAGGTACGGTTCCATAACGCATGGCATGTAATTGAATGAGACCACA
AGGTTCAAATCTGCTTGGAATCAAAATAAAATCAGCTCCTGCTATTATCA
TATGCGCCAGAGGAATATTGAATTTCGCTACTCCTCTGGCTTTCTCAGGG
TACAGTATCTCCAACTGTTCAAGCTGCTTCTCCATTGGTTTTTTGCCCGT
ACCAAGGACTATTATCTGAACATTCTCTTTGATGAAATGGGGAA
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