CV885190

Overview
NameCV885190
Unique NameCV885190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_BACLD (Glycogen synthase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=glgA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.072e-20
Identity = 61/172 (35.47%), Postives = 94/172 (54.65%), Query Frame = -3
Query:  345 FIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE-------EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG 836
            F +E++Q+IVLGTG+   E     +E  +P++ +    F+ PL+  I A +D  L+PS+FEPCGL QL A+RYG VP+V  TGGL DTV        EG  GF    F+             +  T++RAL+ Y   +    +++  M  D+SW   A++++  L + E+ G
Sbjct:  319 FEEEDMQLIVLGTGEAEFENYFRYMEHAFPDRCKAYIGFHEPLSRKIYAASDLFLMPSKFEPCGLGQLIALRYGAVPVVRETGGLHDTVTAYRETTGEG-NGFTFAHFNAH----------DMKHTIKRALSFYHRKEEWGRIVQKAMTHDVSWALSARQYQR-LYSREIKG 478          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_MARMS (Glycogen synthase OS=Marinomonas sp. (strain MWYL1) GN=glgA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.707e-20
Identity = 59/165 (35.76%), Postives = 87/165 (52.73%), Query Frame = -3
Query:  360 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKW---EETLLN 842
            P  +++  +++VLG+G K +E Q  +L+  YP +      +    +H + AG D +LIPSRFEPCGL QL+A++YGT+PIV  TGGL DTV E   G +   F             A+   + R++  +  T    E  KN M  D SW     +W    E+L+N
Sbjct:  319 PALLEKGARLVVLGSGDKYLESQYLELQNNYPNQVSVRIGYFEDYSHRLQAGIDALLIPSRFEPCGLTQLYALKYGTLPIVRQTGGLADTVFE--DGERANGF-----VFKEASAKALQAAMERSIECFHDTNRWQEKQKNAMCYDYSWDAVTDQWISLYESLIN 476          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA2_BRAJA (Glycogen synthase 2 OS=Bradyrhizobium japonicum GN=glgA2 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.707e-20
Identity = 59/159 (37.11%), Postives = 92/159 (57.86%), Query Frame = -3
Query:  387 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV----EEG--FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRA-LATYGTQALAEMMKNGMAQDLSWKGPA 842
            P  + E +Q+ +LG+G + ++ + +      P +   V  ++  LAH+I AG+D +++PSRFEPCGL QL A+RYG VPIV+  GGL DT+    E G   TGF+ G          PV   A++ T+R+A  A +      ++ +NG+A D+SW+  A
Sbjct:  318 PTILGEGMQLALLGSGDRDLQDRYQAAARANPGRIGVVIGYDEILAHLIQAGSDALIVPSRFEPCGLTQLCALRYGAVPIVSRVGGLEDTIVDIGEAGREATGFKFG----------PVTADALAGTLRKANTAFHDKLTWRQLQRNGLATDVSWRSRA 466          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_VIBPA (Glycogen synthase OS=Vibrio parahaemolyticus GN=glgA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.535e-20
Identity = 60/161 (37.27%), Postives = 93/161 (57.76%), Query Frame = -3
Query:  378 FIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVD-CEAVDPV----DVAAVSTTVRRALATYGTQALAEMMK---NGMAQDLSWKGPAKKW 836
            F+K +VQ++V+GTG   +  QLE++   + +K   V  ++  LAH++ AG+DF L+PS FEPCGL Q+++M YGT+PIV   GGL D+V +         + VD C+A   V       A+  T+ RAL  Y  Q L E+ +   + M +D  W+  A+ +
Sbjct:  326 FLKHDVQVVVVGTGDPVLAAQLEEVAAQFSDKFVFVEAYDNELAHLVEAGSDFFLMPSEFEPCGLNQIYSMAYGTLPIVRGVGGLKDSVND---------YDVDPCDATGFVFYEPTSQALLLTMLRALLLY-AQNLTEVQRVQLHAMQKDFCWRKAAESY 476          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_SYNP6 (Glycogen synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=glgA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.535e-20
Identity = 61/152 (40.13%), Postives = 88/152 (57.89%), Query Frame = -3
Query:  372 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKWEE 824
            + Q +VLGTG++  E QL +L   YP +      ++  L+  I AG+D  L+PSRFEPCG+ Q+ A+RYG+VPIV  TGGLVDTV         G+     +  +P+D   + T + RA  +Y  Q    ++ + GMA DLSWK  A  +E+
Sbjct:  302 DAQFVVLGTGERYYETQLWELATRYPGRMSTYLMYDEGLSRRIYAGSDAFLVPSRFEPCGITQMLALRYGSVPIVRRTGGLVDTVFHHDPRHAEGN-GYCFDRYEPLD---LYTCLVRAWESYQYQPQWQKLQQRGMAVDLSWKQSAIAYEQ 449          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_SYNE7 (Glycogen synthase OS=Synechococcus elongatus (strain PCC 7942) GN=glgA PE=3 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 3.535e-20
Identity = 61/152 (40.13%), Postives = 88/152 (57.89%), Query Frame = -3
Query:  372 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKWEE 824
            + Q +VLGTG++  E QL +L   YP +      ++  L+  I AG+D  L+PSRFEPCG+ Q+ A+RYG+VPIV  TGGLVDTV         G+     +  +P+D   + T + RA  +Y  Q    ++ + GMA DLSWK  A  +E+
Sbjct:  302 DAQFVVLGTGERYYETQLWELATRYPGRMSTYLMYDEGLSRRIYAGSDAFLVPSRFEPCGITQMLALRYGSVPIVRRTGGLVDTVFHHDPRHAEGN-GYCFDRYEPLD---LYTCLVRAWESYQYQPQWQKLQQRGMAVDLSWKQSAIAYEQ 449          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_METSB (Glycogen synthase OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=glgA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.535e-20
Identity = 57/155 (36.77%), Postives = 83/155 (53.55%), Query Frame = -3
Query:  357 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNL 821
            VQ+ VLG+G+  + +QL +     P +   V  ++  +AH I AGAD I+IPSRFEPCGL QL A+RYG +PIVA  GGL DT+ +              +   P      +T  R A      +   E+++NGM  D+SW+ PA  + +   +L
Sbjct:  325 VQLAVLGSGEPELVRQLLEAAEARPGRVGAVIGYDEAIAHRIQAGADAIVIPSRFEPCGLTQLCALRYGALPIVARVGGLADTIIDANEMALASGIGTGLQFSPPTADMLGATLERAARLWAEPEIWDELIENGMLTDVSWRRPAALYAKLFRDL 479          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_MANSM (Glycogen synthase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=glgA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.535e-20
Identity = 55/157 (35.03%), Postives = 89/157 (56.69%), Query Frame = -3
Query:  372 HFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKN-GMAQDLSWKGPAKKWEE 839
            + IK+  Q+ +LG+G   +E  L  L   +P+       ++ PL+H+++AG D IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +  T   +          +  +  A+S  + RA + +  Q     ++   M QD SW+  A+++EE
Sbjct:  317 NIIKQGGQLALLGSGAPSLESALLGLAHKHPKNIAVKIGYDEPLSHLMVAGGDVILVPSRFEPCGLTQLYGLKYGTLPLVRQTGGLADTVVDS-TAENIKERRATGFVFNEANSQALSHAISRAFSLWKKQRTWFTVRTVAMEQDFSWQISARRYEE 472          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_GEOUR (Glycogen synthase OS=Geobacter uraniireducens (strain Rf4) GN=glgA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.535e-20
Identity = 60/164 (36.59%), Postives = 92/164 (56.10%), Query Frame = -3
Query:  372 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI------PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKWEE 842
            P F++  +Q+++LGTG +   K L+ +      KARG    ++       LA  I AG+D  L+PS +EPCGL Q+ A+RYG VP+V  TGGL DTV +     Q G+   +  + +     A+  TV R+L  +  + A  ++MK GM+ D SW   A+++EE
Sbjct:  320 PKFVRSRLQLVILGTGDEKYLKLLQDI------KARGAGNISVNIGFHPELAPKIYAGSDIFLMPSHYEPCGLGQMIALRYGAVPLVRKTGGLADTVFDE----QDGATEPNGFSFEDYTPEALWETVSRSLQAFDDKGAWKKLMKRGMSCDYSWDASARRYEE 473          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPT (Glycogen synthase OS=Rhodopseudomonas palustris (strain TIE-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.617e-20
Identity = 61/165 (36.97%), Postives = 86/165 (52.12%), Query Frame = -3
Query:  357 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVD--PVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKWEETLLNL 842
            P  I    Q+ +LG+G   +E+        YP +   V  ++  LAH I AGAD +L+PSRFEPCGL QL A+RYG VP+VA  GGL DTV +     +M + +     V   PV   A+     +  A +    A   +  NGM  D+SWK PA+ + +   +L
Sbjct:  318 PQLIGGGAQLALLGSGDAELEQGYAAAARKYPGQVGAVIGYDEALAHQIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVD---ANEMATATGVATGVQFAPVTTDALIKAFGKTRALFADVVAWRNLQINGMTTDVSWKNPAQHYAKLYRDL 479          
The following BLAST results are available for this feature:
BLAST of CV885190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
GLGA_BACLD2.072e-2035.47Glycogen synthase OS=Bacillus licheniformis (strai... [more]
GLGA_MARMS2.707e-2035.76Glycogen synthase OS=Marinomonas sp. (strain MWYL1... [more]
GLGA2_BRAJA2.707e-2037.11Glycogen synthase 2 OS=Bradyrhizobium japonicum GN... [more]
GLGA_VIBPA3.535e-2037.27Glycogen synthase OS=Vibrio parahaemolyticus GN=gl... [more]
GLGA_SYNP63.535e-2040.13Glycogen synthase OS=Synechococcus sp. (strain ATC... [more]
GLGA_SYNE73.535e-2040.13Glycogen synthase OS=Synechococcus elongatus (stra... [more]
GLGA_METSB3.535e-2036.77Glycogen synthase OS=Methylocella silvestris (stra... [more]
GLGA_MANSM3.535e-2035.03Glycogen synthase OS=Mannheimia succiniciproducens... [more]
GLGA_GEOUR3.535e-2036.59Glycogen synthase OS=Geobacter uraniireducens (str... [more]
GLGA_RHOPT4.617e-2036.97Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885190 ID=CV885190; Name=CV885190; organism=Citrus sinensis; type=EST; length=844bp
TTTTTTTTTTTTGATCTATAAACTTGTTCAGTTGAACTTTTTCATTTCAG
GAGAGTGGCGACAGCCCTCAGAGCCCTTTTACAAAACTGTAAAACAGAAC
TTAATATTTCATTATACAAGGTAAACACTAATGTCTCAACTCCAAACCAT
TATTGAAAATAGCGCATGCTGCATATACTGCCAACCTATGTTATTTCCTA
AGTAATATCTTGGGTTGTGGAGAATTACAGGAACATGTTTGCGGTCCAAA
ATAAAAGTGGAGATTTTTGTAGCCTCGATCAAGGAGTGGCCACATTTTCC
TTGGCAAGAGGAGCAATTTCTTCGCCGTCAATTCCAGGTTCACTACCAGC
AACTTCCAGGTTAAGTAGGGTCTCCTCCCATTTCTTAGCTGGTCCTTTCC
ATGAAAGATCTTGAGCCATGCCATTTTTCATCATTTCAGCCAAAGCTTGA
GTACCATAGGTTGCAAGAGCTCTTCTGACGGTTGTGGACACTGCAGCCAC
ATCTACTGGATCCACAGCCTCACAGTCAACACTGAAGCTTCCCATCTGGA
ATCCTGTAAAGCCTTCTTCCACAGTGTCAACCAAACCACCAGTGGAAGCC
ACGATAGGTACGGTTCCATAACGCATGGCATGTAATTGAATGAGACCACA
AGGTTCAAATCTGCTTGGAATCAAAATAAAATCAGCTCCTGCTATTATCA
TATGCGCCAGAGGAATATTGAATTTCGCTACTCCTCTGGCTTTCTCAGGG
TACAGTATCTCCAACTGTTCAAGCTGCTTCTCCATTGGTTTTTTGCCCGT
ACCAAGGACTATTATCTGAACATTCTCTTTGATGAAATGGGGAA
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