CV885190

Overview
NameCV885190
Unique NameCV885190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_RHOS5 (Glycogen synthase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=glgA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.754e-19
Identity = 53/156 (33.97%), Postives = 82/156 (52.56%), Query Frame = -3
Query:  387 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCE---AVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPA 842
            P FI     + VLGTG   +E  + +LE+ +  +      ++  L+H++ AG D +L+PSRFEPCGL Q++ +RYG +P+VA TGGL DT+          + +  C       P +  A +  +RR +  Y   AL E + KN M   + W+  A
Sbjct:  315 PDFIAAGGGLAVLGTGDAALEGAMRELEVRFSGRVGVRIGYDEGLSHLMFAGGDAVLVPSRFEPCGLTQMYGLRYGAIPVVALTGGLADTI----INANPAALTAGCATGLTFHPTEPPAFAEALRRLIHLYADHALWEKVQKNAMRHPVGWQTSA 466          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_PROM9 (Glycogen synthase OS=Prochlorococcus marinus (strain MIT 9312) GN=glgA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.754e-19
Identity = 68/186 (36.56%), Postives = 96/186 (51.61%), Query Frame = -3
Query:  282 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 818
            QI VLGTG + +E  L QL + YP +      ++  L+ +I  G+D  L+PSRFEPCG+ QL AMRYG+VPIV   GGLVDTV          TGF    F       +P+D    ++ VR   A     +   + K  M+Q+ SW+  A ++E  ++  +V G  EP  D  E+   +    A P
Sbjct:  304 QIAVLGTGDRYLESGLWQLALDYPGRFSVFLTYDDSLSRLIYGGSDAFLMPSRFEPCGISQLLAMRYGSVPIVRRVGGLVDTVLPHDPENNSGTGFCFDRF-------EPIDF--YTSLVRSWEAFRHKDSWELLQKRAMSQEFSWQRSALEYE--MMYKDVCGIKEPSPDVAEVEKFSYGQSADP 478          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_LACS1 (Glycogen synthase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=glgA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.754e-19
Identity = 60/162 (37.04%), Postives = 87/162 (53.70%), Query Frame = -3
Query:  378 HFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE-------EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKW 839
            + ++ +VQ+IVLGTG    E         YP+K      F++ LA  I AGAD  L+PS FEPCGL Q+ +MRYGT+PIV   GGL D+V+       EG TGF    FS             +   ++ AL  Y  + A  +++K  M+QD SW+  ++++
Sbjct:  318 NLVQFDVQVIVLGTGDANFEHDFRYFADTYPDKVGAAITFDVGLAQRIYAGADMFLMPSAFEPCGLSQMISMRYGTLPIVHQIGGLQDSVQPFNPVTGEG-TGFGFHDFS----------GFYMMQEIQEALRLYAESVAWTKVVKQAMSQDFSWETASQEY 468          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_DESHD (Glycogen synthase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=glgA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.754e-19
Identity = 56/160 (35.00%), Postives = 88/160 (55.00%), Query Frame = -3
Query:  357 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ--ALAEMMKNGMAQDLSWKGPAKKWEETLLNL 824
            +++++VLGTG    E++L++    YP K R +  +   LAH I AGAD  L+PSRFEPCG+ Q+ AM YGT+PIV  TGGL DTV      +G   G    D  A +      +   +++A+  +  Q     ++ +N ++ D SW   A ++ +   +L
Sbjct:  310 DIRLVVLGTGDAHYEERLQRFAEGYPGKLRVILGYQEELAHRIYAGADIFLMPSRFEPCGIAQMIAMSYGTIPIVRETGGLKDTVRPYSPISGEGNGFTFTDYNAHE------LLYAIQKAVEMFRNQKDTWQKLQENALSSDFSWNRSAARYRDVYESL 463          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_CHLP8 (Glycogen synthase OS=Chlorobaculum parvum (strain NCIB 8327) GN=glgA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.754e-19
Identity = 55/156 (35.26%), Postives = 87/156 (55.77%), Query Frame = -3
Query:  372 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE----GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWEE 824
            ++Q+IV G+G K  E++L  L   +PEK      F     H +IAG D +++PSR E CG+ Q+ AM YGTVPI  + GG+V+T+EE      TGF    ++ +          A++  +  AL+ +   +  AE+M+ GM +D SW   A+++ E
Sbjct:  336 DLQLIVSGSGNKEFEQELRDLVEEHPEKLAVNTDFTDAFYHQMIAGLDMLIMPSRIESCGMKQMFAMNYGTVPIAYAGGGIVETIEEVSGDKGTGFVFTDYTAE----------ALTAKLGEALSMFDDKERWAELMREGMERDFSWSASAEQYAE 481          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA1_RHIRD (Glycogen synthase 1 OS=Rhizobium radiobacter GN=glgA1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.754e-19
Identity = 55/145 (37.93%), Postives = 80/145 (55.17%), Query Frame = -3
Query:  387 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPA 818
            +++VLG G   +E  L      +  +      +N PL+H++ AG D I+IPSRFEPCGL QL+A+RYG +P+VA TGGL DTV +      + S +       PV +  +   +RR +  Y    L  +M K GM  D+SW+  A
Sbjct:  322 RLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDA-NHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQMQKLGMKSDVSWEKSA 465          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA1_AGRT5 (Glycogen synthase 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=glgA1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.754e-19
Identity = 55/145 (37.93%), Postives = 80/145 (55.17%), Query Frame = -3
Query:  387 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPA 818
            +++VLG G   +E  L      +  +      +N PL+H++ AG D I+IPSRFEPCGL QL+A+RYG +P+VA TGGL DTV +      + S +       PV +  +   +RR +  Y    L  +M K GM  D+SW+  A
Sbjct:  322 RLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDA-NHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQMQKLGMKSDVSWEKSA 465          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_PROM0 (Glycogen synthase OS=Prochlorococcus marinus (strain MIT 9301) GN=glgA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.291e-19
Identity = 67/186 (36.02%), Postives = 96/186 (51.61%), Query Frame = -3
Query:  282 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 818
            QI VLGTG + +E  L QL + YP +      ++  L+ +I  G+D  L+PSRFEPCG+ QL AMRYG++PIV   GGLVDTV          TGF    F       +P+D    ++ VR   A     +   + K  M+Q+ SW+  A ++E  ++  +V G  EP  D  E+   +    A P
Sbjct:  304 QIAVLGTGDRYLESGLWQLALDYPGRFSVFLTYDDSLSRLIYGGSDAFLMPSRFEPCGISQLLAMRYGSIPIVRRVGGLVDTVLPHDPENNSGTGFCFDRF-------EPIDF--YTSLVRSWEAFRHKDSWKLLQKRAMSQEFSWQRSALEYE--IMYKDVCGIKEPSPDVAEVEKFSYGQSADP 478          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_OCEIH (Glycogen synthase OS=Oceanobacillus iheyensis GN=glgA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.291e-19
Identity = 58/165 (35.15%), Postives = 88/165 (53.33%), Query Frame = -3
Query:  348 FIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV--EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVA 836
            F++E++Q+IVLG G++  E   + +E  YP+K      FN  LA  + A ADF+L+PS+FEPCGL QL A++Y TVPIV  TGGL DT+      TG   G    +  A + + V   S  + +  + +       ++KN      SWK  A  + +    L+ +
Sbjct:  313 FLQEDIQLIVLGNGEQEFEYYFKDIEYRYPDKMITHLHFNESLARRLYASADFLLMPSKFEPCGLSQLIALQYKTVPIVRETGGLKDTIIAFNEITGEGNGFRFANYNAHELLHVLKYSLEIYQQPSLWSV-----LIKNVNKSKFSWKDSASAYADVYQQLDAS 472          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_LEPCP (Glycogen synthase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=glgA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.291e-19
Identity = 57/164 (34.76%), Postives = 84/164 (51.22%), Query Frame = -3
Query:  378 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV--------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA-LAEMMKNGMAQDLSWKGPAKKW 842
            P  I+   Q  +LG+G   ME +  +L   +P  A     ++   AH +IAG+D IL+PSRFEPCGL QL+ ++YGT+P+V   GGLVDTV        +   TGF    FS D           +     RA A +  +A   ++ + GM Q   W+  A+++
Sbjct:  325 PALIERGFQFALLGSGDAGMENEFRRLAEQHPTAAAVRLGYDEAFAHRLIAGSDLILVPSRFEPCGLTQLYGLKYGTLPVVRRVGGLVDTVADARLETLDHDATGFVFDDFSAD----------GLIGACLRAKALFRRRADWLQVQRRGMQQPFGWEDSARQY 478          
The following BLAST results are available for this feature:
BLAST of CV885190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
GLGA_RHOS51.754e-1933.97Glycogen synthase OS=Rhodobacter sphaeroides (stra... [more]
GLGA_PROM91.754e-1936.56Glycogen synthase OS=Prochlorococcus marinus (stra... [more]
GLGA_LACS11.754e-1937.04Glycogen synthase OS=Lactobacillus salivarius subs... [more]
GLGA_DESHD1.754e-1935.00Glycogen synthase OS=Desulfitobacterium hafniense ... [more]
GLGA_CHLP81.754e-1935.26Glycogen synthase OS=Chlorobaculum parvum (strain ... [more]
GLGA1_RHIRD1.754e-1937.93Glycogen synthase 1 OS=Rhizobium radiobacter GN=gl... [more]
GLGA1_AGRT51.754e-1937.93Glycogen synthase 1 OS=Agrobacterium tumefaciens (... [more]
GLGA_PROM02.291e-1936.02Glycogen synthase OS=Prochlorococcus marinus (stra... [more]
GLGA_OCEIH2.291e-1935.15Glycogen synthase OS=Oceanobacillus iheyensis GN=g... [more]
GLGA_LEPCP2.291e-1934.76Glycogen synthase OS=Leptothrix cholodnii (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885190 ID=CV885190; Name=CV885190; organism=Citrus sinensis; type=EST; length=844bp
TTTTTTTTTTTTGATCTATAAACTTGTTCAGTTGAACTTTTTCATTTCAG
GAGAGTGGCGACAGCCCTCAGAGCCCTTTTACAAAACTGTAAAACAGAAC
TTAATATTTCATTATACAAGGTAAACACTAATGTCTCAACTCCAAACCAT
TATTGAAAATAGCGCATGCTGCATATACTGCCAACCTATGTTATTTCCTA
AGTAATATCTTGGGTTGTGGAGAATTACAGGAACATGTTTGCGGTCCAAA
ATAAAAGTGGAGATTTTTGTAGCCTCGATCAAGGAGTGGCCACATTTTCC
TTGGCAAGAGGAGCAATTTCTTCGCCGTCAATTCCAGGTTCACTACCAGC
AACTTCCAGGTTAAGTAGGGTCTCCTCCCATTTCTTAGCTGGTCCTTTCC
ATGAAAGATCTTGAGCCATGCCATTTTTCATCATTTCAGCCAAAGCTTGA
GTACCATAGGTTGCAAGAGCTCTTCTGACGGTTGTGGACACTGCAGCCAC
ATCTACTGGATCCACAGCCTCACAGTCAACACTGAAGCTTCCCATCTGGA
ATCCTGTAAAGCCTTCTTCCACAGTGTCAACCAAACCACCAGTGGAAGCC
ACGATAGGTACGGTTCCATAACGCATGGCATGTAATTGAATGAGACCACA
AGGTTCAAATCTGCTTGGAATCAAAATAAAATCAGCTCCTGCTATTATCA
TATGCGCCAGAGGAATATTGAATTTCGCTACTCCTCTGGCTTTCTCAGGG
TACAGTATCTCCAACTGTTCAAGCTGCTTCTCCATTGGTTTTTTGCCCGT
ACCAAGGACTATTATCTGAACATTCTCTTTGATGAAATGGGGAA
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