CV885190

Overview
NameCV885190
Unique NameCV885190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_THET2 (Glycogen synthase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=glgA PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.390e-16
Identity = 53/157 (33.76%), Postives = 80/157 (50.96%), Query Frame = -3
Query:  372 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEE 842
            P  ++   ++ V G G   +++   + E   PE  R +  ++  +A +  AGA+ +L+PSRFEPCGL+Q+ A RYGT P+  + GGL DTVE+G  G       V  E   P  +      + R  A        EM    M +D SW+GPA+ + E
Sbjct:  288 PRLLEMGFRLYVQGVGDGGLQEAFLRAEEENPEGVRFLPAYDEAMARLAYAGAEAVLVPSRFEPCGLVQMIASRYGTPPVARAVGGLKDTVEDGRAG-------VLFETYHPEGLLYGVLRLFRLGA-------EEMGLRAMEKDFSWEGPARAYRE 430          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_THECA (Glycogen synthase OS=Thermus caldophilus GN=glgA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.390e-16
Identity = 53/157 (33.76%), Postives = 80/157 (50.96%), Query Frame = -3
Query:  372 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEE 842
            P  ++   ++ V G G   +++   + E   PE  R +  ++  +A +  AGA+ +L+PSRFEPCGL+Q+ A RYGT P+  + GGL DTVE+G  G       V  E   P  +      + R  A        EM    M +D SW+GPA+ + E
Sbjct:  289 PRLLEMGFRLYVQGVGDGGLQEAFLRAEEENPEGVRFLPAYDEAMARLAYAGAEAVLVPSRFEPCGLVQMIASRYGTPPVARAVGGLKDTVEDGRAG-------VLFETYHPEGLLYGVLRLFRLGA-------EEMGLRAMEKDFSWEGPARAYRE 431          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_ROSDO (Glycogen synthase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=glgA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.390e-16
Identity = 49/158 (31.01%), Postives = 81/158 (51.27%), Query Frame = -3
Query:  372 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKWEE 842
            P  +     + VLG+G + +E         +P     +  ++  L+H++  G+D ILIPSRFEPCGL QL+ +RYGT+P+VA TGGL DT+ +        + +   +   PV   A+S  + R    +   +  + MM+  M   + W+  +K + E
Sbjct:  315 PDLVARGAGLAVLGSGDRDLEAAFVAAAHRFPGAVGVIIGYDEDLSHLMQGGSDAILIPSRFEPCGLTQLYGLRYGTIPVVARTGGLADTIIDANEAALAATCATGVQFA-PVTPDALSHAIDRCCDLFAERKTWSGMMRCAMRHPVGWETSSKAYLE 471          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_EDWI9 (Glycogen synthase OS=Edwardsiella ictaluri (strain 93-146) GN=glgA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.390e-16
Identity = 51/154 (33.12%), Postives = 79/154 (51.30%), Query Frame = -3
Query:  399 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSW 842
            P  ++   Q+ +LG G   +++    +   +P +      ++   +H I+AGAD I++PSRFEPCGL QL+ ++YG++P+V  TGGL DTV     E    G   G    D  A D      ++  +RRAL  +G   L   + +  MAQ   W
Sbjct:  315 PTLLEGGAQLALLGAGDAQLQEAFLAVAAEHPGQVGVQIGYHEAFSHRIMAGADVIVVPSRFEPCGLTQLYGLKYGSLPLVRHTGGLADTVNDCALENLADGSATGFVFHDANAAD------LARAIRRALVLWGRPTLWRYVQRQAMAQSFGW 462          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_DESVV (Glycogen synthase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=glgA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.390e-16
Identity = 56/174 (32.18%), Postives = 86/174 (49.43%), Query Frame = -3
Query:  333 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPG 842
            P  ++ +V +I+LG G    E +  +L   Y  +   +  +   LAH I AG+D  L+PSR+EPCGL Q++A+RYGT P+  + GGL DT+        TGF  G     CE+     + A+   V   L T        M++  MAQ  +W+   + + +    L V+  E G
Sbjct:  323 PRLMESDVGVIILGEGNLTHEARALELMEAYRGRVCTIVSYTEDLAHRIQAGSDIFLMPSRYEPCGLTQMYALRYGTPPVATAVGGLRDTIVPWPSPESTGFTFGR----CESA--AFLRAILDAVH--LWTTAPGDWQGMVRRAMAQAFTWERAGRAYLDLYAQLGVSPGEEG 488          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_DESVH (Glycogen synthase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=glgA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.390e-16
Identity = 56/174 (32.18%), Postives = 86/174 (49.43%), Query Frame = -3
Query:  333 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPG 842
            P  ++ +V +I+LG G    E +  +L   Y  +   +  +   LAH I AG+D  L+PSR+EPCGL Q++A+RYGT P+  + GGL DT+        TGF  G     CE+     + A+   V   L T        M++  MAQ  +W+   + + +    L V+  E G
Sbjct:  323 PRLMESDVGVIILGEGNLTHEARALELMEAYRGRVCTIVSYTEDLAHRIQAGSDIFLMPSRYEPCGLTQMYALRYGTPPVATAVGGLRDTIVPWPSPESTGFTFGR----CESA--AFLRAILDAVH--LWTTAPGDWQGMVRRAMAQAFTWERAGRAYLDLYAQLGVSPGEEG 488          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_CLOK5 (Glycogen synthase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=glgA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.390e-16
Identity = 50/110 (45.45%), Postives = 62/110 (56.36%), Query Frame = -3
Query:  525 IKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-------EEGFTGFQMGSFSVD 833
            + ++VQ+IVLGTG    E+    L   YP        F+  LAH I A +D  L+PS FEPCGL QL A+RYGT+PIV  TGGL DT+        EG  GF   +F  D
Sbjct:  319 VSKHVQLIVLGTGYNEYEEYFRYLSSKYPRNVSTNIYFDDVLAHKIYAASDMFLMPSLFEPCGLGQLIALRYGTIPIVRETGGLKDTIIPYNKYTGEG-NGFSFANFDGD 427          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_CLOK1 (Glycogen synthase OS=Clostridium kluyveri (strain NBRC 12016) GN=glgA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.390e-16
Identity = 50/110 (45.45%), Postives = 62/110 (56.36%), Query Frame = -3
Query:  525 IKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-------EEGFTGFQMGSFSVD 833
            + ++VQ+IVLGTG    E+    L   YP        F+  LAH I A +D  L+PS FEPCGL QL A+RYGT+PIV  TGGL DT+        EG  GF   +F  D
Sbjct:  319 VSKHVQLIVLGTGYNEYEEYFRYLSSKYPRNVSTNIYFDDVLAHKIYAASDMFLMPSLFEPCGLGQLIALRYGTIPIVRETGGLKDTIIPYNKYTGEG-NGFSFANFDGD 427          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_THET8 (Glycogen synthase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=glgA PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.371e-16
Identity = 53/157 (33.76%), Postives = 80/157 (50.96%), Query Frame = -3
Query:  372 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEE 842
            P  ++   ++ V G G   +++   + E   PE  R +  ++  +A +  AGA+ +L+PSRFEPCGL+Q+ A RYGT P+  + GGL DTVE+G  G       V  E   P  +      + R  A        EM    M +D SW+GPA+ + E
Sbjct:  288 PRLLEMGFRLYVQGVGDGGLQEAFLRAEEENPEGVRFLPAYDEAMARLAYAGAEAVLVPSRFEPCGLVQMIASRYGTPPVARAVGGLKDTVEDGRGG-------VLFETYHPEGLLYGVLRLFRLGA-------EEMGLRAMEKDFSWEGPARAYRE 430          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_KLEP3 (Glycogen synthase OS=Klebsiella pneumoniae (strain 342) GN=glgA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.371e-16
Identity = 51/163 (31.29%), Postives = 81/163 (49.69%), Query Frame = -3
Query:  372 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKWEE 842
            P  +++  Q+ +LG G   +++        +P K      ++   +H I+ GAD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A+      ++   +RRA   +   +L   + +  M  D SW+  A  + E
Sbjct:  315 PGLLEQGGQLALLGAGDPVLQEGFLAAAAEHPGKVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGLATGFVFEDSNAL------SLLRAIRRAFVLWSRPSLWRYVQRQAMNMDFSWQVAANSYRE 471          
The following BLAST results are available for this feature:
BLAST of CV885190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
GLGA_THET21.390e-1633.76Glycogen synthase OS=Thermus thermophilus (strain ... [more]
GLGA_THECA1.390e-1633.76Glycogen synthase OS=Thermus caldophilus GN=glgA P... [more]
GLGA_ROSDO1.390e-1631.01Glycogen synthase OS=Roseobacter denitrificans (st... [more]
GLGA_EDWI91.390e-1633.12Glycogen synthase OS=Edwardsiella ictaluri (strain... [more]
GLGA_DESVV1.390e-1632.18Glycogen synthase OS=Desulfovibrio vulgaris subsp.... [more]
GLGA_DESVH1.390e-1632.18Glycogen synthase OS=Desulfovibrio vulgaris (strai... [more]
GLGA_CLOK51.390e-1645.45Glycogen synthase OS=Clostridium kluyveri (strain ... [more]
GLGA_CLOK11.390e-1645.45Glycogen synthase OS=Clostridium kluyveri (strain ... [more]
GLGA_THET82.371e-1633.76Glycogen synthase OS=Thermus thermophilus (strain ... [more]
GLGA_KLEP32.371e-1631.29Glycogen synthase OS=Klebsiella pneumoniae (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885190 ID=CV885190; Name=CV885190; organism=Citrus sinensis; type=EST; length=844bp
TTTTTTTTTTTTGATCTATAAACTTGTTCAGTTGAACTTTTTCATTTCAG
GAGAGTGGCGACAGCCCTCAGAGCCCTTTTACAAAACTGTAAAACAGAAC
TTAATATTTCATTATACAAGGTAAACACTAATGTCTCAACTCCAAACCAT
TATTGAAAATAGCGCATGCTGCATATACTGCCAACCTATGTTATTTCCTA
AGTAATATCTTGGGTTGTGGAGAATTACAGGAACATGTTTGCGGTCCAAA
ATAAAAGTGGAGATTTTTGTAGCCTCGATCAAGGAGTGGCCACATTTTCC
TTGGCAAGAGGAGCAATTTCTTCGCCGTCAATTCCAGGTTCACTACCAGC
AACTTCCAGGTTAAGTAGGGTCTCCTCCCATTTCTTAGCTGGTCCTTTCC
ATGAAAGATCTTGAGCCATGCCATTTTTCATCATTTCAGCCAAAGCTTGA
GTACCATAGGTTGCAAGAGCTCTTCTGACGGTTGTGGACACTGCAGCCAC
ATCTACTGGATCCACAGCCTCACAGTCAACACTGAAGCTTCCCATCTGGA
ATCCTGTAAAGCCTTCTTCCACAGTGTCAACCAAACCACCAGTGGAAGCC
ACGATAGGTACGGTTCCATAACGCATGGCATGTAATTGAATGAGACCACA
AGGTTCAAATCTGCTTGGAATCAAAATAAAATCAGCTCCTGCTATTATCA
TATGCGCCAGAGGAATATTGAATTTCGCTACTCCTCTGGCTTTCTCAGGG
TACAGTATCTCCAACTGTTCAAGCTGCTTCTCCATTGGTTTTTTGCCCGT
ACCAAGGACTATTATCTGAACATTCTCTTTGATGAAATGGGGAA
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